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Exploring the adaptive behaviour and environmental acclimation of artificially-bred Chinese sturgeon (Acipenser sinensis) in semi-open marine environment: insights for endangered species conservation 探索人工繁殖中华鲟在半开放海洋环境中的适应行为和环境适应性:对濒危物种保护的启示
IF 6.2 1区 农林科学 Q1 FISHERIES Pub Date : 2024-08-07 DOI: 10.1007/s11160-024-09884-w
Huangxin Liu, Pengcheng Li, Xiaoqian Leng, Ming Jiang, Li Shen, Puyuan Wang, Hui Zhang, Jiang Luo, Wei Xiong, Yuan Liu, Hao Du

The Chinese sturgeon (Acipenser sinensis) is a critically endangered, large migratory fish that serves as a vital indicator of ecological status of marine and river environments. Conservation efforts for Chinese sturgeon primarily focus on freshwater rearing, potentially leading to smaller adult sizes and higher disease incidence due to limited exposure to marine environments. Thus, it is imperative to study the behavioural characteristics and marine life history of artificially reared populations in seawater environments. In this study, acoustic telemetry technology was employed to investigate the behaviour of the Chinese sturgeon. We deployed an acoustic array at a nearshore-fenced marine farm on Bailong Island and conducted a one-year (December 2020–December 2021) tracking of ten acoustic-tagged fish, comprising five adults and five juveniles. We generated distribution heat maps and analysed displacement during typhoons and tidal events to differentiate activity levels. Annual distribution revealed areas of distinct increased density, with adults displaying a denser distribution compared to the more scattered pattern observed in juveniles. Rhythmic behaviour in response to tidal cycles was observed. During typhoon periods, individuals exhibited reduced activity levels but increased concentration, with no significant diurnal behavioral variations. These age-specific and environmentally responsive habitat preferences provide valuable supplementary insights into the species' life history and potential conservation strategies.

Graphical Abstract

中华鲟(Acipenser sinensis)是一种极度濒危的大型洄游鱼类,是海洋和河流环境生态状况的重要指标。中华鲟的保护工作主要集中在淡水饲养上,由于接触海洋环境的机会有限,可能导致成鱼体型较小,疾病发病率较高。因此,研究海水环境中人工饲养种群的行为特征和海洋生活史势在必行。本研究采用声学遥测技术研究中华鲟的行为。我们在白龙岛的一个近岸围栏海水养殖场部署了一个声学阵列,并对10条被声学标记的鱼类进行了为期一年(2020年12月至2021年12月)的追踪,其中包括5条成鱼和5条幼鱼。我们生成了分布热图,并分析了台风和潮汐事件期间的位移,以区分活动水平。年度分布显示了密度明显增加的区域,成鱼的分布更为密集,而幼鱼的分布则更为分散。根据潮汐周期观察到有节奏的行为。在台风期间,个体的活动量减少,但集中度增加,没有明显的昼夜行为变化。这些年龄特异性和环境反应性栖息地偏好为了解该物种的生活史和潜在的保护策略提供了宝贵的补充资料。 图文摘要
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引用次数: 0
Global research performance trends and knowledge gaps on cobia (Rachycentron canadum): a scientometric perspective 关于鲯鳅(Rachycentron canadum)的全球研究绩效趋势和知识差距:科学计量学视角
IF 6.2 1区 农林科学 Q1 FISHERIES Pub Date : 2024-08-07 DOI: 10.1007/s11160-024-09882-y
Alexandre Ricardo dos Santos Jύnior, Marcelo Francisco de Nóbrega

Rachycentron canadum (cobia) is a marine fish species important to fisheries and aquaculture worldwide. The species has gathered scientific attention in the last decades, and today, a considerable body of knowledge exists on it. There are several reviews pertaining to different aspects of research, but a quantitative outlook has been lacking to identify contributors and motives for research on cobia. This study aims to present the first global research performance analysis on R. canadum through scientometrics. We found a total of 446 documents, published in the timespan of 1964–2023, from a variety of countries and sources. Although various countries have published studies on the species, a few countries concentrate the vast majority of research efforts. The most cited articles and the sources with most publications were mainly aquaculture-related. Some countries with high contribution to capture have a significant portion of their scientific production directed to aquaculture-related sources, while others have low scientific production in general. Some countries where the cobia fishery is present have had no research found at all. The boom in publication rate from the 2000s onwards exhibits a similar tendency to the rate of aquaculture production over the years, with aquaculture probably representing the main research driver for R. canadum. We recommend focusing additional scientific endeavors on wild cobia populations in countries where its fishery holds significance. Furthermore, we suggest that the currently existing aquaculture focus on the species may overshadow research interest on its fisheries.

Graphical abstract

鲯鳅(Rachycentron canadum)是一种对全世界渔业和水产养殖业都很重要的海洋鱼类。在过去的几十年里,该鱼种受到了科学界的关注,如今,有关该鱼种的知识已相当丰富。有几篇综述涉及不同方面的研究,但一直缺乏定量展望,无法确定鳗鲡研究的贡献者和动机。本研究旨在通过科学计量学方法,首次对鲯鳅的全球研究绩效进行分析。我们找到了 1964-2023 年间发表的 446 篇文献,这些文献来自不同的国家和来源。尽管各国都发表了关于该物种的研究,但少数几个国家集中了绝大多数的研究力量。被引用最多的文章和出版物最多的来源主要与水产养殖有关。一些对捕捞贡献大的国家,其科研成果的很大一部分与水产养殖有关,而其他国家的科研成果一般较少。一些有鲯鳅渔业的国家根本没有发现任何研究成果。从 2000 年代开始,发表论文的数量激增,这与多年来水产养殖产量的增长趋势相似,水产养殖可能是鲯鳅研究的主要驱动力。我们建议将更多的科学努力集中在其渔业具有重要意义的国家的野生鲯鳅种群上。此外,我们还建议,目前对该物种的水产养殖关注可能会掩盖对其渔业的研究兴趣。
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引用次数: 0
Half a century of citizen science tag-recapture data reveals stock delineation and cross-jurisdictional connectivity of an iconic pelagic fish 半个世纪的公民科学标签捕获数据揭示了一种标志性中上层鱼类的种群划分和跨辖区连通性
IF 6.2 1区 农林科学 Q1 FISHERIES Pub Date : 2024-08-06 DOI: 10.1007/s11160-024-09880-0
Belinda K. Goddard, Tristan A. Guillemin, Hayden T. Schilling, Julian M. Hughes, Stephanie Brodie, Corey P. Green, Robert Harcourt, Charlie Huveneers, Daniel Ierodiaconou, Iain M. Suthers, Matthew D. Taylor, Sean R. Tracey, Victoria Camilieri-Asch, Thomas M. Clarke, Ross G. Dwyer, Clay Hilbert, John Holdsworth, Jonathan Mitchell, Julian Pepperell, Emma Simpson, Vinay Udyawer, Fabrice R. A. Jaine

Tag-recapture programs to monitor the movements of fish populations are among some of the longest-running citizen-science datasets to date. Here, using half a century of yellowtail kingfish (Seriola lalandi, Carangidae) tag-recapture data collected through citizen-science projects, we report novel insights into population connectivity in Australia and New Zealand (NZ). Despite the importance of kingfish in commercial and recreational fisheries, substantial knowledge gaps about their stock structure and connectivity between jurisdictions hinder current management efforts. Between 1974 and 2022, 63,432 releases and 4636 recaptures (7.3%) of tagged kingfish were collected in Australia and NZ. Most tagged individuals (51.4%) were recaptured within 10 km of their original release location up to 14 years post-release (mean: 225 days), indicating some degree of site fidelity. However, 656 (14.2%) kingfish were recaptured over 100 km from their release location, with one fish travelling at least 2834 km in 702 days. Seasonal variability was evident for releases and recaptures, with more releases occurring in summer and autumn in most jurisdictions. Network analysis of recaptures revealed no connectivity between tagged kingfish from western and eastern Australia, supporting genetic delineation. By contrast, extensive connectivity exists across eastern Australia and NZ, with 87 kingfish moving between five Australian state jurisdictions, 316 individuals travelling across 15 bioregions and six kingfish moving between Australia and NZ. Our findings provide important new insights into the structure and connectivity of the eastern Australia kingfish stock and suggest increased collaboration between state and international fisheries jurisdictions may support improved stock assessment and management.

监测鱼类种群活动的标签捕获项目是迄今为止运行时间最长的公民科学数据集之一。在此,我们利用半个世纪以来通过公民科学项目收集的黄尾王鱼(Seriola lalandi,鲤科)标签捕获数据,报告了对澳大利亚和新西兰(NZ)种群连通性的新见解。尽管帝王鱼在商业和休闲渔业中非常重要,但有关其种群结构和辖区间连通性的大量知识缺口阻碍了当前的管理工作。1974年至2022年期间,澳大利亚和新西兰共收集了63432次释放和4636次重新捕获(7.3%)的标记帝王鱼。大多数被标记的个体(51.4%)在释放后14年内(平均:225天)在其最初释放地点的10公里范围内被重新捕获,这表明了一定程度的地点忠诚度。然而,有 656 条(14.2%)帝王鱼在距离其释放地点 100 公里以上的地方被重新捕获,其中一条帝王鱼在 702 天内至少旅行了 2834 公里。放流和重新捕获的季节性变化明显,在大多数辖区,夏季和秋季的放流次数较多。重新捕获的网络分析显示,澳大利亚西部和东部被标记的帝王鱼之间没有联系,这支持了基因划分。相比之下,澳大利亚东部和新西兰之间存在广泛的联系,87条翠鸟在澳大利亚5个州辖区之间活动,316条翠鸟穿越15个生物区,6条翠鸟在澳大利亚和新西兰之间活动。我们的研究结果为了解澳大利亚东部帝王鱼种群的结构和连通性提供了重要的新见解,并表明加强各州和国际渔业管辖区之间的合作有助于改进种群评估和管理。
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引用次数: 0
Blue shark vertical movement patterns in the Central Mediterranean: bycatch mitigation windows revealed from pop-up satellite archival tag data 地中海中部大青鲨垂直运动模式:弹出式卫星档案标签数据揭示的减少误捕窗口
IF 6.2 1区 农林科学 Q1 FISHERIES Pub Date : 2024-07-30 DOI: 10.1007/s11160-024-09879-7
Pierluigi Carbonara, Giulia Prato, Sébastien Alfonso, Massimiliano Bottaro, Theda Hinrichs, Uwe Krumme, Cosmidano Neglia, Simone Niedermüller, Lola Toomey, Walter Zupa

In the Mediterranean Sea, pelagic longline fisheries, targeting tuna and swordfish, have contributed significantly to the bycatch of threatened chondrichthyan species, such as blue shark (Prionace glauca). The Mediterranean blue shark population is assessed as critically endangered, making a timely implementation of mitigation measures crucial. A comprehensive understanding of blue shark habitat use dynamics is essential for deriving appropriate mitigation measures. This study aimed at evaluating vertical movement behaviour and investigating factors potentially influencing the movements of blue sharks in the Mediterranean Sea. Twenty-six blue sharks, bycaught in a longline fishery in the southern Adriatic, were tagged with pop-up satellite archival tags. Analysis of data from thirteen recovered tags revealed a distinctive diel movement pattern. Blue sharks used shallower waters during the night and deeper waters during the day, characterised by steep ascents and descents during sunset and sunrise, respectively. In addition, lunar phases were also influencing the depth of blue shark movements, with sharks using deeper waters right before and during full-moon. Shark size, salinity, currents, spatial location and time of the year were additional factors influencing blue shark depth use. The observed tendency of blue sharks to use deeper areas at daytime and prior and during the full moon period offers possibilities to develop and test bycatch mitigation strategies. Aligning longline fishing schedules and fishing depths with blue shark behaviour during the fishing seasons could hold promise to effectively reduce spatio-temporal overlap between fishing and blue shark distribution and may ultimately decrease the bycatch impact of the fishery.

在地中海,以金枪鱼和箭鱼为目标的中上层延绳钓渔业大大增加了受威胁的软骨鱼类物种的副渔获量,例如大青鲨(Prionace glauca)。地中海大青鲨种群被评估为极度濒危,因此及时实施减缓措施至关重要。全面了解大青鲨栖息地的使用动态对于制定适当的缓解措施至关重要。这项研究旨在评估大青鲨的垂直移动行为,并调查可能影响大青鲨在地中海移动的因素。在亚得里亚海南部的延绳钓渔业中捕获的 26 条大青鲨被贴上了弹出式卫星档案标签。对 13 个回收标签的数据进行分析后发现,大青鲨的日间活动模式与众不同。大青鲨夜间活动于较浅水域,白天活动于较深水域,其特点是在日落和日出时分别急速上升和下降。此外,月相也会影响大青鲨的活动深度,在月圆之前和月圆期间,大青鲨会进入较深的水域。鲨鱼的大小、盐度、水流、空间位置和时间也是影响大青鲨活动深度的因素。观察到的大青鲨在白天、满月之前和满月期间使用较深水域的趋势为制定和测试减少副渔获物战略提供了可能性。根据大青鲨在捕捞季节的行为调整延绳钓捕捞时间表和捕捞深度,有望有效减少捕捞和大青鲨分布之间的时空重叠,并最终减少渔业的副渔获物影响。
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引用次数: 0
A review of fish diversity in Mediterranean seagrass habitats, with a focus on functional traits 地中海海草栖息地鱼类多样性综述,重点关注功能特征
IF 6.2 1区 农林科学 Q1 FISHERIES Pub Date : 2024-07-29 DOI: 10.1007/s11160-024-09876-w
A. Lattanzi, B. Bellisario, R. Cimmaruta

Besides providing key ecosystem services, including improved water quality, coastal protection, and carbon sequestration, seagrasses are highly productive habitat-forming species essential in supporting fish diversity at the global level. In the Mediterranean Sea, seagrasses represent the main component of the sublittoral marine environment hosting a huge number of fish species that use this habitat for reproduction, foraging and/or refuge from predation. However, a complete synthesis of fish species observed in different seagrass habitats is still lacking at the whole Mediterranean basin scale, so hindering a thorough understanding of the main mechanisms involved in determining fish diversity patterns. We performed a systematic review by implementing a semi-automated, threshold-based filtering pipeline that allowed building up a dataset concerning all fish species reported in native Mediterranean seagrasses, including specific functional traits known to be involved with the potential use of seagrasses by fish. These data allowed to carry on a narrative synthesis on fish diversity in seagrass habitats, providing support to several assumptions repeatedly stated in literature but so far sustained mainly by local and fragmented data. Our findings suggested the onset of a general pattern in the occurrence of species, mostly based on life history and driven by body size and feeding habits. We evidenced unexpected knowledge gaps on the role of habitat heterogeneity and fish life stages in determining the presence and the potential use of seagrasses by species. In depth studies are therefore needed to better understand the mechanisms behind the structuring of fish communities, fundamental for the maintenance of marine biodiversity.

Graphical abstract

除了提供关键的生态系统服务(包括改善水质、保护海岸和碳固存),海草还是高产的生境形成物种,对支持全球鱼类多样性至关重要。在地中海,海草是近岸海洋环境的主要组成部分,栖息着大量的鱼类物种,它们利用这一生境进行繁殖、觅食和/或躲避捕食。然而,在整个地中海盆地范围内,仍然缺乏对不同海草栖息地所观察到的鱼类物种的完整综合,因此阻碍了对决定鱼类多样性模式的主要机制的透彻了解。我们通过实施半自动化、基于阈值的过滤管道进行了系统性审查,从而建立了一个数据集,该数据集涉及地中海本地海草中所有已报道的鱼类物种,包括已知与鱼类可能利用海草有关的特定功能特征。这些数据有助于对海草栖息地的鱼类多样性进行叙述性综合,为文献中反复提到的、但迄今为止主要由局部和零散数据支持的一些假设提供支持。我们的研究结果表明,鱼类的出现有一个总体模式,主要基于生活史,并受体型和摄食习惯的驱动。我们发现,在生境异质性和鱼类生命阶段对物种出现和可能利用海草的决定作用方面,存在着意想不到的知识空白。因此,需要进行深入研究,以更好地了解鱼类群落结构背后的机制,这是维持海洋生物多样性的基础。
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引用次数: 0
Octopus diet during the settlement period using DNA metabarcoding 利用 DNA 代谢编码研究章鱼在定居期间的饮食情况
IF 6.2 1区 农林科学 Q1 FISHERIES Pub Date : 2024-07-24 DOI: 10.1007/s11160-024-09875-x
Oscar Escolar, Fernando Á. Fernández-Álvarez, Roger Villanueva

The settlement phase is a challenging period for meropelagic octopus, as they adapt to their new life in the sea bottom after a planktonic period. Their ecology and trophic interactions with the surrounding fauna in the wild are practically unknown. To understand their predatory role in the littoral zone, the diet of recently settled Octopus vulgaris from a Mediterranean sandy bottom was studied through molecular methods. Amphipods were present in all the analysed stomach contents, with a total of 20 amphipod taxa recorded as prey. Jassa slatteryi and Microprotopus maculatus were the most commonly found amphipod species. Hydrozoans, decapod crustaceans, cephalopods and bivalves followed amphipods in importance. Niche breadth index assigned to small recently settled octopus the role of a specialised predator, increasing the diversity of prey as they grow. Larger juveniles displayed a higher number of prey taxa suggesting a decreasing predatory specialisation with octopus size and an ontogenetic shift in trophic ecology from diet mainly based on amphipods to a richer diet. The considerable arm elongation and the strong muscular arm crown development after settlement probably allow the juvenile benthic octopus to develop ambush predation and speculative hunting, increasing the range of potential benthic prey species along its adaptation to the benthos.

Graphic abstract

沉降阶段对经层章鱼来说是一个具有挑战性的时期,因为它们要在浮游期之后适应海底的新生活。它们在野外的生态学以及与周围动物的营养相互作用几乎不为人知。为了了解章鱼在滨海区的捕食作用,我们通过分子方法研究了地中海沙质海底新近定居的章鱼的食物。所有分析的胃内容物中都含有片脚类动物,共有 20 个片脚类动物分类群被记录为猎物。Jassa slatteryi和Microprotopus maculatus是最常见的片脚类动物。其次是水螅类、十足甲壳类、头足类和双壳类。新近定居的小型章鱼被赋予了专门捕食者的角色,它们在成长过程中会增加猎物的多样性。体型较大的幼体显示出更多的猎物分类群,这表明随着章鱼体型的增大,其捕食专业化程度在降低,营养生态学也从主要以片脚类动物为食转变为以更丰富的食物为食。章鱼幼体在定居后臂长大幅伸长,臂冠肌肉发达,这可能使底栖章鱼幼体能够发展伏击捕食和投机性捕食,在适应底栖环境的过程中增加了潜在底栖猎物种类的范围。
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引用次数: 0
Trophic ecology of fishes in estuaries 河口鱼类的营养生态学
IF 6.2 1区 农林科学 Q1 FISHERIES Pub Date : 2024-07-20 DOI: 10.1007/s11160-024-09878-8
Alan K. Whitfield, Stephen J. M. Blaber, Michael Elliott, Trevor D. Harrison

The understanding of the role of fishes in the trophic functioning of estuaries has increased in stages over many decades. It began with qualitative and quantitative dietary studies, mainly from the 1970s onwards, and progressed to more sophisticated stable isotope work towards the end of the 20th Century and into the present. Building on an initial wide array of predominantly single species rather than community dietary studies, our global knowledge of the food and feeding ecology of fishes in estuaries has now progressed to a stage where we can begin to discern patterns and make generalised statements on the nature and role of fish assemblages in the trophic functioning of these systems. In this review we summarize the dominant aspects relating to the trophic ecology of fishes in estuaries, including ontogenetic changes in fish diet and food provision for the nursery function of estuaries, detritus as a direct and indirect driver of the food web, the influence of latitude and habitat type on trophic structuring, predator prey relationships with an emphasis on the importance of invertebrates in fish food chains, the role of stable isotopes in combination with dietary analyses in understanding trophic functioning, and the effects of environmental change and fishing and other human activities on fish food webs in estuaries. Apart from providing an overview of information on the current status of our knowledge on fish trophic ecology in estuaries, this review also identifies important research gaps that need to be filled.

几十年来,人们对鱼类在河口营养功能中的作用的认识逐步加深。最初主要是从 20 世纪 70 年代开始的定性和定量膳食研究,到 20 世纪末至今更为复杂的稳定同位素研究。在最初的一系列主要是单一物种而非群落膳食研究的基础上,我们对河口鱼类食物和摄食生态学的全球知识现已发展到一个阶段,我们可以开始辨别模式,并对鱼类群落在这些系统的营养功能中的性质和作用做出概括性说明。在这篇综述中,我们总结了与河口鱼类营养生态学有关的主要方面,包括鱼类食性的发育变化和为河口育苗功能提供的食物、作为食物网直接和间接驱动力的残渣、纬度和生境类型对营养结构的影响、捕食者与被捕食者的关系,重点是无脊椎动物在鱼类食物链中的重要性;稳定同位素与食物分析相结合在了解营养功能方面的作用;环境变化、捕鱼和其他人类活动对河口鱼类食物网的影响。本综述除了概述我们对河口鱼类营养生态学知识的现状,还指出了需要填补的重要研究空白。
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引用次数: 0
Uncovering the global status of plastic presence in marine chondrichthyans 揭示海洋软骨鱼类中塑料存在的全球现状
IF 6.2 1区 农林科学 Q1 FISHERIES Pub Date : 2024-07-19 DOI: 10.1007/s11160-024-09877-9
Yi Gong, Huachen Gao, Zehao Guo, Xuemin Huang, Yunkai Li, Zezheng Li, Chenxuan Du, Feng Wu

Plastic pollution represents a global environmental issue. Awareness of plastic pollution in marine organisms increased strongly during the last decades, including chondrichthyans. Due to a lack of a broad and comprehensive view of this global issue in chondrichthyans, we synthesized the 48 publications covering 54 species since 2002, and employed bibliometric analysis and data exploration to summarize the historical progression of the development, characteristics of plastics in chondrichthyans and evaluate their potential impacts across various regions, habitats, and Red List categories. The bibliometric analysis revealed that the investigation of plastic distribution in demersal sharks inhabiting the nearshore areas of the Mediterranean and northeastern Atlantic Ocean is a major research focus. Based on the current evaluation, plastics have been ubiquitously discovered within sharks, skates, and rays; however, only less than 5% of chondrichthyans worldwide have been investigated. Among these, 25 species are classified under one of the three threatened categories (critically endangered, endangered or vulnerable), according to IUCN Red List. The average abundance (all specimens) and load (specimens that contained plastics) in chondrichthyans were 2.86 ± 7.71 items/individual and 4.91 ± 9.39 items/individual, respectively. Plastic abundance/load is not influenced by the sampling regions, habitats, or Red List categories; however, higher records were found in the endangered and near threatened species. The plastics are predominantly fibrous in shape, with blue and black being the predominant colors, along with polypropylene and polyethylene in polymer type. Notably, inconsistencies in sampling, processing, and identification methods across studies might impeded the integration and comparison of data. This review highlights the potential implications of plastic pollution from chondrichthyans on biodiversity conservation and emphasizes the necessity to consider intra- and inter-specific variations in biometric and ecological characteristics, as well as establish standardized protocols to facilitate effective comparisons in contamination dynamics between studies of chondrichthyans.

塑料污染是一个全球性的环境问题。在过去的几十年中,人们对包括软骨鱼类在内的海洋生物的塑料污染问题的认识有了很大的提高。由于缺乏对这一全球性问题在软骨鱼类中的广泛而全面的研究,我们综合了自2002年以来发表的48篇论文,涉及54个物种,并采用文献计量分析和数据挖掘的方法,总结了塑料在软骨鱼类中的历史发展进程、特点,并评估了其在不同地区、栖息地和红色名录类别中的潜在影响。文献计量分析表明,调查栖息在地中海和大西洋东北部近岸区域的底栖鲨鱼体内的塑料分布情况是研究的重点。根据目前的评估,在鲨鱼、鳐鱼和魟鱼体内发现的塑料无处不在;然而,全世界只有不到 5%的软骨鱼类受到了调查。根据世界自然保护联盟(IUCN)红色名录,在这些物种中,有 25 个物种被归入三种濒危类别之一(极度濒危、濒危或易危)。软骨鱼类的平均丰度(所有标本)和负荷(含有塑料的标本)分别为 2.86 ± 7.71 件/个体和 4.91 ± 9.39 件/个体。塑料丰度/负荷不受采样区域、栖息地或红色名录类别的影响;然而,濒危和近危物种的记录较高。塑料的形状以纤维状为主,颜色以蓝色和黑色为主,聚合物类型以聚丙烯和聚乙烯为主。值得注意的是,不同研究在取样、处理和鉴定方法上的不一致可能会妨碍数据的整合和比较。本综述强调了软骨鱼类塑料污染对生物多样性保护的潜在影响,并强调有必要考虑生物计量学和生态学特征的种内和种间差异,以及建立标准化方案,以促进软骨鱼类研究之间污染动态的有效比较。
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引用次数: 0
Fishing in the gene-pool: implementing trawl-associated eDNA metaprobe for large scale monitoring of fish assemblages 在基因库中捕鱼:采用拖网相关 eDNA 元探针大规模监测鱼类群落
IF 6.2 1区 农林科学 Q1 FISHERIES Pub Date : 2024-07-17 DOI: 10.1007/s11160-024-09874-y
Giulia Maiello, Andrea Bellodi, Alessia Cariani, Paolo Carpentieri, Laura Carugati, Davide Cicala, Alice Ferrari, Cristina Follesa, Alessandro Ligas, Paolo Sartor, Alice Sbrana, Peter Shum, Matteo Stefani, Lorenzo Talarico, Stefano Mariani, Tommaso Russo

Marine biodiversity monitoring in the Mediterranean’s increasingly threatened ecosystems is crucial for effective ecosystem conservation and management. Here, we leveraged the Mediterranean International Trawl Survey program (MEDITS) to implement eDNA sampling through the recently tested ‘metaprobe’ procedure and characterize fish assemblages in three separate areas off the Italian coasts: Northern Adriatic Sea (NoAS), Ligurian and Northern Tyrrhenian Sea (LNTS), and Sardinian Sea (SaS). By combining the information from two homologous mitochondrial 12S metabarcodes––i.e., Elas02 and Tele02 targeting elasmobranchs and teleosts, respectively––we identified 108 species, over 60% of which overlapped with those caught by the trawl net. We produced an accurate reconstruction of fish community composition of the examined sites, reflecting differences in species assemblages linked with both geographic area and depth range. Metaprobe eDNA data consistently returned a biodiversity ‘bonus’ mostly consisting of pelagic taxa not captured through bottom trawl surveys, including rare and endangered taxa (e.g., elasmobranchs). Overall, the spatial characterisation of the assemblages across the surveyed areas was better delineated and more robust using eDNA metabarcoding than trawl data. Our results support the operationalisation of the metaprobe as a simple, inexpensive, versatile sampling tool, in association with pre-existing ship surveys, to overcome many of the limitations of marine data collection and strengthen marine management.

在地中海日益受到威胁的生态系统中,海洋生物多样性监测对于有效的生态系统保护和管理至关重要。在这里,我们利用地中海国际拖网调查计划(MEDITS),通过最近测试的 "元探针 "程序实施 eDNA 采样,并描述了意大利沿海三个不同区域的鱼类组合特征:北亚得里亚海(NoAS)、利古里亚海和北第勒尼安海(LNTS)以及撒丁岛海(SaS)。通过结合两个同源线粒体 12S 元条码(即 Elas02 和 Tele02,分别针对鳍鳃亚纲鱼类和远洋鱼类)的信息,我们确定了 108 个物种,其中超过 60% 的物种与拖网捕获的物种重叠。我们准确地重建了所考察地点的鱼类群落组成,反映了与地理区域和深度范围相关的物种组合差异。Metaprobe eDNA 数据持续返回生物多样性 "红利",主要包括底拖网调查未捕获的中上层分类群,包括稀有和濒危分类群(如鞘鳃类)。总体而言,与拖网数据相比,使用 eDNA 代谢标码能更好地划分调查区域内的组合空间特征,并且更加稳健。我们的研究结果支持将元胞仪作为一种简单、廉价、多功能的取样工具,与现有的船舶调查相结合,克服海洋数据收集的许多局限性,加强海洋管理。
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引用次数: 0
Seven decades of transformation: evaluating the dynamics of coral reef fish communities in the Xisha Islands, South China Sea 七十年的转变:评估南海西沙群岛珊瑚礁鱼类群落的动态变化
IF 6.2 1区 农林科学 Q1 FISHERIES Pub Date : 2024-07-11 DOI: 10.1007/s11160-024-09872-0
Jinfa Zhao, Teng Wang, Chunhou Li, Juan Shi, Hongyu Xie, Lijuan Luo, Yayuan Xiao, Yong Liu

The Xisha Islands constitute the largest coral reef archipelago on the northern margin of the Coral Triangle and are the largest coral reef archipelago among the islands in the South China Sea. This study employed various survey methods including underwater spearfishing, gill netting, handline fishing, longlining fishing, underwater visual surveys, and environmental DNA (eDNA). Additionally, historical data from 1956 to 2023 were reviewed to comprehensively analyze the adaptation characteristics of the fish community structure in the Xisha Islands. The Xisha Islands have documented a total of 874 coral reef fish species, categorized into 27 orders, 102 families, and 337 genera. Of these species, the order Perciformes demonstrated the greatest species richness, which represents 71.05% of the total fish species documented. The structure of coral reef fish communities in the Xisha Islands has undergone significant changes. Firstly, a significant decline in the population of large-sized and carnivorous fish species was observed. The proportion of large-sized fish species diminished by 6.02% (62 species), and the medium-sized fish species saw a reduction of 3.09% (51 species). In contrast, there was a surge of 9.12% in the small-sized fish species population. The carnivorous fish species experienced a decrease of 4.73% (102 species), while an increase was noted in the population of herbivorous and omnivorous fish species. Secondly, the numbers of orders, families, and genera have also significantly decreased, with noticeable declines in the average taxonomic distinctness (Delta +), the variation taxonomic distinctness (Lambda +), functional richness (FRic), and quadratic entropy (RaoQ). Thirdly, the similarity between fish species at different time periods is relatively low. Among different functional groups, large-sized and carnivorous fish species exhibit the lowest similarity, whereas herbivorous fish species exhibit the highest. The turnover of live coral fish species is also evident. Overall, the coral reef fish in the Xisha Islands are showing a trend towards herbivory, miniaturization, and a simplification in species composition and functionality. This study contributes to a better understanding and prediction of the adaptation trends in fish species composition in the Xisha Islands, which is crucial for ensuring the ecosystem services of coral reefs and for the conservation and restoration of ecosystems.

西沙群岛是珊瑚礁三角区北缘最大的珊瑚礁群岛,也是中国南海诸岛中最大的珊瑚礁群岛。本研究采用了多种调查方法,包括水下鱼叉捕鱼、刺网捕鱼、手绳捕鱼、延绳钓捕鱼、水下目测调查和环境 DNA(eDNA)。此外,还查阅了 1956 年至 2023 年的历史数据,全面分析了西沙群岛鱼类群落结构的适应特征。西沙群岛共记录了 874 种珊瑚礁鱼类,分为 27 目、102 科、337 属。其中,鲈形目物种最丰富,占记录鱼类物种总数的 71.05%。西沙群岛珊瑚礁鱼类群落结构发生了显著变化。首先,大型鱼类和肉食性鱼类数量明显减少。大型鱼类物种的比例减少了 6.02%(62 种),中型鱼类物种减少了 3.09%(51 种)。相比之下,小型鱼类的数量则激增了 9.12%。肉食性鱼类的数量减少了 4.73%(102 种),而草食性和杂食性鱼类的数量则有所增加。其次,目、科和属的数量也明显减少,平均分类独特性(Delta +)、变异分类独特性(Lambda +)、功能丰富度(FRic)和二次熵(RaoQ)也明显下降。第三,不同时期鱼类物种之间的相似性相对较低。在不同功能群中,大型鱼类和肉食性鱼类的相似性最低,而草食性鱼类的相似性最高。活珊瑚鱼类物种的更替也很明显。总体而言,西沙群岛的珊瑚礁鱼类呈现出草食化、小型化、物种组成和功能简化的趋势。这项研究有助于更好地了解和预测西沙群岛鱼类物种组成的适应趋势,这对确保珊瑚礁的生态系统服务以及生态系统的保护和恢复至关重要。
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引用次数: 0
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Reviews in Fish Biology and Fisheries
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