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Cover and Table of Content JMSB Vol 3, No 1 (2021) JMSB第3卷第1期(2021)封面和目录
Pub Date : 2021-08-31 DOI: 10.37604/jmsb.v3i1.82
C. Jmsb
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引用次数: 0
Effect of ethanol extract from Karuk leaf (Piper sarmentosum Roxb.) on the growth of Malassezia furfur in vitro 芦芦叶乙醇提取物对毛马拉色菌体外生长的影响
Pub Date : 2020-12-30 DOI: 10.37604/jmsb.v2i2.59
K. Khusnul, Asti Kusmayanti, L. Rahman, N. Ratnaningtyas
In Indonesia, there are numerous therapeutic plants found. Some of the plants used in herbal medicine are Karuk leaf (Piper sarmentosum Roxb.) belong to the Piperaceae family. Karuk leaf has chemical contents such as saponins, polyphenols, flavonoids, and essential oils and many tests are carried out on several bacteria, but testing of fungi is rarely studied. This study aims to determine the ethanol extract activities from karuk leaf in inhibiting the growth of the Malassezia furfur fungus and to determine its minimum inhibition by using the Kirby-Bauer method. The study was conducted by an experimental method of the M. furfur fungus using the Kirby-Bauer method. The ethanol extract from karuk leaf was made in various concentrations and tested on 0.5 McFarland fungus by diffusion on Sabouraud Dextrose Agar (SDA). The results of this analysis showed that the ethanol extract of Karuk leaf could inhibit the M. furfur fungus at a concentration of 30% by 5.3 mm, 40% by 6.6 mm, 50% by 7.6 mm, 60% by 11.3 mm, 70% by 12.5 mm, 80% by 15.6 mm, 90% by 17.4 mm, and 100% by 19.5 mm. Based on the results of the study and the data analysis, it can be concluded that several concentrations of ethanol extract of Karuk leaf affect the growth of M. furfur in vitro.
在印度尼西亚,发现了许多治疗植物。一些植物在草药中使用的是卡鲁克叶(Piper sarmentosum Roxb.)属于胡椒科。芦芦叶含有皂苷、多酚、类黄酮和精油等化学成分,对几种细菌进行了许多测试,但对真菌的测试很少进行研究。本研究旨在通过Kirby-Bauer法测定芦竹叶乙醇提取物对马拉色菌生长的抑制作用,并确定其最小抑制作用。采用Kirby-Bauer法对毛霉进行了实验研究。采用沙乌德葡萄糖琼脂(Sabouraud Dextrose Agar, SDA)扩散法,制备了不同浓度的芦竹叶乙醇提取物,并对0.5 McFarland真菌进行了检测。分析结果表明,芦竹叶乙醇提取物在浓度为30% × 5.3 mm、40% × 6.6 mm、50% × 7.6 mm、60% × 11.3 mm、70% × 12.5 mm、80% × 15.6 mm、90% × 17.4 mm和100% × 19.5 mm时,对真菌的抑制作用显著。根据研究结果和数据分析,可以得出不同浓度的卡鲁克叶乙醇提取物对体外生长的影响。
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引用次数: 0
Extraction, characterization, and biological toxicity of β-glucans from Saccharomyces cerevisiae isolated from ragi 豚草中酿酒酵母β-葡聚糖的提取、鉴定及生物毒性研究
Pub Date : 2020-12-30 DOI: 10.37604/jmsb.v2i2.62
I. Ramadhani, D. Larissa, Y. Yuliani, M. Amir, Kusmiati Kusmiati
β-glucan is a homopolysaccharide with biological activities that are beneficial to health as an immunostimulant, anti-inflammatory, anti-diabetic, anti-cholesterol, and many more. β-glucan extraction results from yeast require characterization related to this bioactive quality, such as β-glucan weight, monomer analysis, functional groups, and cytotoxicity assay. Four Saccharomyces cerevisiae isolates were isolated from three local ragi samples, namely the SC-1, SC-2, SC-3, and SAF from instant ragi. This study aimed to obtain the best candidate of S. cerevisiae isolates to produce high β-glucan levels and low protein levels and to test the potential for cytotoxicity. The four isolates were rejuvenated on potato dextrose agar (PDA), then inoculated into the liquid glucose yeast peptone (GYP) fermentation medium for six days. Saccharomyces cerevisiae cells were extracted by neutralizing acid-base, dried and weighed as a crude β-glucan (mg per 300 mL). The highest yield was SC-2 (818 mg), followed by SC-3 (726 mg), SAF (597 mg), and SC-1 (433 mg). The presence of –OH (alcohol), -C-C-C- (alkane), and –R-O-R- (ether) groups were showed using FTIR characterization. Glucose equivalent β-glucan levels and protein levels were determined using a UV-Vis spectrophotometer. The results showed that β-glucan SC-1 gave the best results with glucose equivalent β-glucan levels of 4,865% and protein levels of 3,804%. The crude β-glucan toxicity test using the brine shrimp lethality test (BSLT) method shows that the β-glucan of the SAF strain has LC50 cytotoxicity of 114.8 ppm followed by β-glucan cytotoxicity from local ragi LC50 was SC-2 (323.5 ppm), SC-1 (331.1 ppm), and SC-3 (354.8 ppm). Therefore, based on the results, SC-1 isolate obtained the highest β-glucan crude and the lowest protein content was SC-2. The β-glucan of SAF extract had the highest toxicity properties based on the IC50 value.
β-葡聚糖是一种具有生物活性的同质多糖,对健康有益,具有免疫刺激、抗炎、抗糖尿病、抗胆固醇等作用。从酵母中提取β-葡聚糖的结果需要与这种生物活性质量相关的表征,如β-葡聚糖重量、单体分析、官能团和细胞毒性测定。从3份本地ragi样品中分离到4株酿酒酵母菌,分别为即食ragi的SC-1、SC-2、SC-3和SAF。本研究旨在获得高β-葡聚糖和低蛋白水平酿酒葡萄球菌分离株的最佳候选菌株,并测试其细胞毒性潜力。将4株菌株在马铃薯葡萄糖琼脂(PDA)上恢复活力,然后接种于液体葡萄糖酵母蛋白胨(GYP)发酵培养基中,培养6 d。用酸碱中和法提取酿酒酵母细胞,干燥后称粗β-葡聚糖(mg / 300 mL)。产率最高的是SC-2 (818 mg),其次是SC-3 (726 mg)、SAF (597 mg)和SC-1 (433 mg)。用FTIR表征表明- oh(醇)、- c - c - c -(烷烃)和- r - o - r -(醚)基团的存在。用紫外-可见分光光度计测定葡萄糖等效β-葡聚糖水平和蛋白质水平。结果表明,β-葡聚糖SC-1的效果最好,葡萄糖当量β-葡聚糖水平为4865%,蛋白质水平为3804%。采用卤虾致死试验(BSLT)法进行β-葡聚糖粗毒试验,结果表明,SAF菌株的β-葡聚糖LC50毒性为114.8 ppm,其次为SC-2 (323.5 ppm)、SC-1 (331.1 ppm)和SC-3 (354.8 ppm)。由此可见,SC-1分离物β-葡聚糖粗含量最高,蛋白质含量最低的是SC-2。根据IC50值,SAF提取物的β-葡聚糖具有最高的毒性。
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引用次数: 3
Culturable bacterial abundance in Volvariella volvacea cultivation medium and characterization of its bacteria 草粪培养基中可培养细菌丰度及其细菌特性研究
Pub Date : 2020-12-30 DOI: 10.37604/jmsb.v2i2.52
M. Masrukhin, I. Saskiawan
Straw mushroom (Volvariella volvacea) is one of the popular edible fungi in Indonesia. Previous researches showed the correlation among the type of substrate, substrate quality, and its composting process to the microbial community, yield, and biological efficiency. The aim of the research is to analyze the culturable bacteria abundance in straw mushroom cultivation medium, characterize the bacteria in several stages of mushroom cultivation and investigate the interaction between V. volvacea with its resident bacteria. Samples were taken from mushroom farmers in Subang and Karawang regencies, Indonesia. The materials for cultivation medium are the mixture of cotton and paddy straw and the pasteurization was performed at 65-70°C for 7 hours. The result shows the abundance of the bacteria in most of the cultivation stages is relatively similar i.e. 108 CFU/g, except in 15 days after inoculation (DAI), the bacterial abundance is lower i.e.6.24 x 107 CFU/g. Twenty-five isolates were obtained and Gram-positive bacteria is the dominant bacteria found in the cultivation medium, especially rod-shaped Gram-positive bacteria. According to co-culture assay there are nine isolates that decrease the growth rate and clearly inhibit mycelial growth. The other 10 isolates have lower inhibitory activity, and 6 isolates have no inhibitory activity to the mycelial growth. C38 isolates have the highest mycelial growth inhibition. It belongs to rod-shaped Gram positive group of bacteria which isolated from the early stage of V. volvacea cultivation medium (5 DAI).
草菇(Volvariella volvacea)是印度尼西亚流行的食用菌之一。已有研究表明,基质类型、基质质量及其堆肥过程与微生物群落、产量和生物效率之间存在相关性。本研究的目的是分析草菇培养基中可培养菌的丰度,确定草菇栽培各阶段细菌的特征,并探讨草菇V. volvacea与其寄生菌的相互作用。样本取自印度尼西亚苏邦和卡拉旺县的蘑菇种植者。培养基材料为棉花与稻秆的混合物,在65-70℃条件下巴氏杀菌7小时。结果表明,除接种后15天(DAI)细菌丰度较低(6.24 × 107 CFU/g)外,其余各培养阶段细菌丰度基本一致,均为108 CFU/g。共分离25株,革兰氏阳性菌以棒状革兰氏阳性菌为主。共培养试验结果表明,有9株菌株对菌丝生长有明显抑制作用。其余10株菌株抑菌活性较低,6株菌株对菌丝生长无抑制活性。C38菌株对菌丝生长的抑制作用最强。该菌属杆状革兰氏阳性菌群,是从V. volvacea培养基(5 DAI)早期分离出来的。
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引用次数: 1
The influence of biocarrier of Aspergillus niger and Trichoderma harzianum toward vegetative growth of sorghum in the field experiment 田间试验研究了黑曲霉和哈茨木霉生物载体对高粱营养生长的影响
Pub Date : 2020-12-30 DOI: 10.37604/jmsb.v2i2.60
A. Sugiharto, T. P. Napitupulu, M. Sudiana
Compared to other cereal crops, sorghum has a higher drought tolerance trait. However, efforts are needed to increase the productivity of sorghum, particularly in drought marginal land. One strategy to be implemented is the utilization of soil microorganisms formulated with biocarrier. Therefore, the aim of this study was to evaluate the influence of the fungal strain Aspergillus niger and Trichoderma harzianum formulated with compost and zeolite as biocarrier towards vegetative growth of sorghum. The field experiment was designed as a randomized block designed, factorial pattern with 4 replications. The first factor was selecting biocarrier, namely zeolite, compost, and a mixture of zeolite: compost (1:1). The second factor was the fungal inoculants, A. niger, and T. harzianum. The observed parameter was the growth profile of sorghum during vegetative growth, including stalk diameter and height. The results showed that the type of biocarrier, as well as the fungal strains did influence the growth of sorghum. The highest stalk diameter and height of sorghum were obtained after application of A. niger formulated with a mixture of zeolite: compost (1:1), with 17% and 41.2% higher than control, respectively. This condition shows that a mixture of zeolite and compost is seemingly able to create better micro-ecological conditions for fungal microbes to function effectively. Therefore, our findings suggested the addition of zeolite to compost for the application of biocarrier in the field experiment.
与其他谷类作物相比,高粱具有较高的耐旱性。然而,需要努力提高高粱的生产力,特别是在干旱边缘土地上。一种可实施的策略是利用与生物载体配制的土壤微生物。因此,本研究旨在评价以堆肥和沸石为生物载体配制的黑曲霉和哈兹木霉对高粱营养生长的影响。田间试验采用随机区组设计,4个重复。第一个因素是选择生物载体,即沸石,堆肥,沸石与堆肥的混合物(1:1)。第二个因素是真菌接种剂,黑曲霉和哈兹氏梭菌。观测参数为高粱营养生长期间的生长曲线,包括茎粗和茎高。结果表明,生物载体类型和真菌菌株对高粱的生长有影响。以沸石与堆肥(1:1)配制的黑曲霉处理高粱的茎粗和株高最高,分别比对照高17%和41.2%。这种情况表明,沸石和堆肥的混合物似乎能够为真菌微生物有效发挥作用创造更好的微生态条件。因此,我们的研究结果建议在堆肥中添加沸石作为生物载体在田间试验中应用。
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引用次数: 3
Development of a dimer-based screening system for dimerization inhibitor of HIV-1 protease 基于二聚体的HIV-1蛋白酶二聚化抑制剂筛选系统的建立
Pub Date : 2020-12-30 DOI: 10.37604/jmsb.v2i2.42
I. D. A. P. Dwipayana, Y. M. Syah, Reza Aditama, Feraliana Feraliana, A. Fibriani
An in vitro dimer-based screening system (DBSS) for selecting new HIV-1 protease dimerization inhibitor candidates from natural compounds had been established. This system utilizes a fusion between HIV-1 protease and dimer binding domain of AraC protein (proteaseHIV1-AraCDBD) where fluorescence signal will be emitted in the presence of HIV-1 protease inhibitor. However, this screening system had not been evaluated. Therefore, this study was aimed to evaluate it in recombinant Escherichia coli culture. The expression of proteaseHIV1-AraCDBD fusion gene was observed for 18 hours. Its crude lysate isolation was done once every 3 hours and analyzed using SDS PAGE. To test the DBSS, darunavir was used as positive control, and Nigella sativa extract (JH3) was used as the test compound. The results of SDS PAGE analysis on crude lysates presented a ~24.2 kDa band, which was the predicted size of the proteaseHIV1-AraCDBD fusion protein based on its amino acid sequence. The growth curve and protein expression profiles revealed that the 15 hours was the optimum culture age to be used in the screening system. Darunavir testing in DBSS showed an increase in fluorescence signal compared to the negative control. The same increase in fluorescence signal was also obtained from the JH3 compound test. In conclusion, DBSS could be used as an assay to screen for new HIV-1 protease inhibitors, and the JH3 compound demonstrated the ability to inhibit HIV-1 protease dimerization.
建立了一种基于二聚体的体外筛选系统(DBSS),用于从天然化合物中筛选新的HIV-1蛋白酶二聚体抑制剂候选物。该系统利用HIV-1蛋白酶与AraC蛋白二聚体结合域(proteaseHIV1-AraCDBD)的融合,在HIV-1蛋白酶抑制剂存在的情况下发出荧光信号。然而,这种筛选系统尚未得到评价。因此,本研究的目的是在重组大肠杆菌培养中对其进行评价。观察proteaseHIV1-AraCDBD融合基因表达18小时。每隔3小时对其粗裂解物进行1次分离,用SDS PAGE进行分析。以达那韦为阳性对照,以黑草提取物(JH3)为试验化合物,对DBSS进行检测。粗裂解物的SDS - PAGE分析结果显示约24.2 kDa,这是根据其氨基酸序列预测的proteaseHIV1-AraCDBD融合蛋白的大小。生长曲线和蛋白表达谱显示,15h是筛选系统的最佳培养年龄。与阴性对照相比,在DBSS中Darunavir检测显示荧光信号增加。JH3复方试验也获得了相同的荧光信号增加。综上所述,DBSS可用于筛选新的HIV-1蛋白酶抑制剂,JH3化合物显示出抑制HIV-1蛋白酶二聚化的能力。
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引用次数: 1
Cover JMSB Vol 2, No 1 (2020) 封面JMSB第2卷第1期(2020)
Pub Date : 2020-07-31 DOI: 10.37604/jmsb.v2i1.44
C. Jmsb
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引用次数: 0
Cover JMSB Vol.1 No.2 (2019) 封面JMSB 2019年第1卷第2期
Pub Date : 2019-12-30 DOI: 10.37604/jmsb.v1i2.32
C. Jmsb
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引用次数: 0
Cover JMSB Vol 1, No 1 (2019) 封面JMSB第1卷第1期(2019)
Pub Date : 2019-06-26 DOI: 10.37604/jmsb.v1i1.15
Jmsb Jmsb
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引用次数: 0
Nickel (Ni) reduction in Sorowako post-mining soil through application of mycorrhiza Acaulospora sp. associated with Canavalia ensiformis L. 应用与Canavalia ensiformis L.相关的Acaulospora菌根对Sorowako矿区后土壤镍的还原作用。
Pub Date : 2019-06-24 DOI: 10.37604/jmsb.v1i1.19
M. Akib, K. Mustari, T. Kuswinanti, S. A. Syaiful, Syatrawati, Z. Kumalawati
The nickel (Ni) content in a post-mining soil of Pomalaa mines reached 14,200 mg.kg-1 and became a limiting factor in the plant growth process. A Ni reduction in the soil by using phyto-accumulator such as Jack bean (Canavalia ensiformis L.) can be improved by combining it with arbuscular mycorrhizal (AM) fungi. The purpose of this study was to determine the effect of the mycorrhizal fungus Acaulospora sp. on the efficiency of Ni reduction by C. ensiformis. This experiment was carried out by using a randomized block design with three different treatments, include: 1) C. ensiformis without Acaulospora sp. inoculation (negative control), 2) C. ensiformis inoculated with indigenous Acaulospora sp. and 3) C. ensiformis inoculated with non-indigenous Acaulospora sp. The study was conducted in the nursery that belongs to PT. Vale Indonesia Tbk., Sorowako, South Sulawesi, Indonesia. The results showed that highest nickel accumulation was found in the root inoculated with indigenous Acaulospora sp. (9500 mg.kg-1), followed by stem (1400 mg.kg-1), leaf and pod (1300 mg.kg-1), seed (1200 mg.kg-1), and flower (1100 mg.kg-1). This study indicates that application of the indigenous Acaulospora sp. can improve C. ensiformis efficiency to reduce Ni content at Sorowako post-mining area.
Pomalaa矿区采后土壤中镍(Ni)含量达14200 mg。Kg-1,成为植物生长过程中的限制因子。豆角(Canavalia ensiformis L.)等植物蓄积物与丛枝菌根真菌(AM)结合使用,可以提高其对土壤Ni的还原效果。本研究的目的是确定菌根真菌Acaulospora sp.对弯管菌还原镍效率的影响。本试验采用随机区组设计,采用3种不同处理,分别为:1)不接种针叶孢子虫(阴性对照)、2)接种本地针叶孢子虫(Acaulospora sp.)和3)接种非本地针叶孢子虫(Acaulospora sp.)。研究在PT. Vale Indonesia Tbk苗圃进行。印度尼西亚苏拉威西岛南部的索罗瓦科。结果表明,镍积累量最高的部位为根(9500 mg.kg-1),其次为茎(1400 mg.kg-1)、叶和荚果(1300 mg.kg-1)、种子(1200 mg.kg-1)和花(1100 mg.kg-1)。本研究表明,在Sorowako矿区施用本地Acaulospora sp.可以提高C. ensiformis降低Ni含量的效率。
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引用次数: 4
期刊
Journal of Microbial Systematics and Biotechnology
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