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ADAR2-mediated Q/R editing of GluA2 in homeostatic synaptic plasticity
IF 6.7 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-05-13 DOI: 10.1126/scisignal.adr1442
Lucy Peterson, Richard Coca, Shreya Parikh, Katrina McCarthy, Heng-Ye Man
Homeostatic synaptic plasticity is a negative feedback mechanism through which neurons modify their synaptic strength to counteract chronic increases or decreases in activity. In response to activity deprivation, synaptic strength is enhanced by increasing the number of AMPA receptors (AMPARs), particularly Ca2+-permeable AMPARs, at the synapse. Here, we found that this increase in Ca2+-permeable AMPARs during homeostatic upscaling was mediated by decreased posttranscriptional editing of GRIA2 mRNA encoding the AMPAR subunit GluA2. In cultured neurons, activity deprivation resulted in increases in the amount of unedited GluA2, such that its ion channel pore contains a glutamine (Q) codon instead of arginine (R), and in the number of Ca2+-permeable AMPARs at the synapse. These effects were mediated by a splicing factor–dependent decrease in ADAR2 abundance and activity in the nucleus. Overexpression of ADAR2 or CRISPR-Cas13–directed editing of GluA2 transcripts blocked homeostatic upscaling in activity-deprived primary neurons. In mice, dark rearing resulted in decreased Q-to-R editing of GluA2-encoding transcripts in the primary visual cortex (V1), and viral overexpression of ADAR2 in the V1 blocked the induction of homeostatic synaptic plasticity. The findings indicate that activity-dependent regulation of GluA2 editing contributes to homeostatic synaptic plasticity.
稳态突触可塑性是一种负反馈机制,神经元通过调节其突触强度来抵消活动的慢性增加或减少。作为对活动剥夺的反应,突触强度通过增加突触上AMPA受体(ampar)的数量而增强,特别是Ca2+可渗透的ampar。在此,我们发现在稳态升级过程中Ca2+渗透性AMPAR的增加是由编码AMPAR亚基GluA2的GRIA2 mRNA转录后编辑减少介导的。在培养的神经元中,活动剥夺导致未编辑的GluA2数量增加,使得其离子通道孔含有谷氨酰胺(Q)密码子而不是精氨酸(R),并且突触中Ca2+可渗透的ampar数量增加。这些影响是由剪接因子依赖性的ADAR2丰度和活性的降低介导的。ADAR2的过表达或crispr - cas13对GluA2转录本的定向编辑阻断了活动剥夺初级神经元的稳态升级。在小鼠中,黑暗饲养导致初级视觉皮层(V1)中glua2编码转录本的Q-to-R编辑减少,V1中ADAR2的病毒过表达阻断了稳态突触可塑性的诱导。这些发现表明,GluA2编辑的活动依赖性调节有助于稳态突触可塑性。
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引用次数: 0
Adherens junctions co-opt EGFR-ERK signaling for epithelial mechanotransduction 粘附连接在上皮机械转导中协同EGFR-ERK信号
IF 6.7 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-05-13 DOI: 10.1126/scisignal.adx0682
Ellen K. Potoczky, Alpha S. Yap
In this issue of Science Signaling, Houtekamer et al. report a mechanism by which adherens junctions enable epithelia to respond to mechanical stress. They demonstrate that E-cadherin–containing adhesions stimulate ERK signaling in response to tissue tension through a metalloproteinase pathway that releases EGF receptor ligands.
在这一期的《科学信号》中,Houtekamer等人报道了粘附连接使上皮细胞对机械应力作出反应的机制。他们证明,含有e -钙粘蛋白的粘连通过金属蛋白酶途径释放EGF受体配体,刺激ERK信号响应组织张力。
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引用次数: 0
An atlas of bacterial serine-threonine kinases reveals functional diversity and key distinctions from eukaryotic kinases 细菌丝氨酸-苏氨酸激酶图谱揭示了与真核生物激酶的功能多样性和关键区别
IF 6.7 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-05-06 DOI: 10.1126/scisignal.adt8686
Brady O’Boyle, Wayland Yeung, Jason D. Lu, Samiksha Katiyar, Tomer M. Yaron-Barir, Jared L. Johnson, Lewis C. Cantley, Natarajan Kannan
Bacterial serine-threonine kinases (STKs) regulate diverse cellular processes associated with cell growth, virulence, and pathogenicity and are evolutionarily related to the druggable eukaryotic STKs. A deeper understanding of how bacterial STKs differ from their eukaryotic counterparts and how they have evolved to regulate diverse bacterial signaling functions is crucial for advancing the discovery and development of new antibiotic therapies. Here, we classified more than 300,000 bacterial STK sequences from the NCBI RefSeq nonredundant and UniProt protein databases into 35 canonical and seven pseudokinase families on the basis of the patterns of evolutionary constraints in the conserved catalytic domain and flanking regulatory domains. Through statistical comparisons, we identified features distinguishing bacterial STKs from eukaryotic STKs, including an arginine residue in a regulatory helix (C helix) that dynamically couples the ATP- and substrate-binding lobes of the kinase domain. Biochemical and peptide library screens demonstrated that evolutionarily constrained residues contributed to substrate specificity and kinase activation in the Mycobacterium tuberculosis kinase PknB. Together, these findings open previously unidentified avenues for investigating bacterial STK functions in cellular signaling and for developing selective bacterial STK inhibitors.
细菌丝氨酸-苏氨酸激酶(STKs)调节与细胞生长、毒力和致病性相关的多种细胞过程,并与可用药的真核STKs进化相关。深入了解细菌STKs与真核细胞的不同之处,以及它们如何进化以调节各种细菌信号功能,对于推进新抗生素疗法的发现和开发至关重要。在这里,我们根据保守催化结构域和侧翼调控结构域的进化约束模式,将NCBI RefSeq非冗余和UniProt蛋白数据库中的30多万个细菌STK序列分类为35个典型和7个伪激酶家族。通过统计比较,我们确定了区分细菌STKs与真核STKs的特征,包括调节螺旋(C螺旋)中的精氨酸残基,该螺旋动态偶联激酶结构域的ATP和底物结合叶。生化和肽库筛选表明,进化受限的残基有助于结核分枝杆菌激酶PknB的底物特异性和激酶激活。总之,这些发现为研究细菌STK在细胞信号传导中的功能和开发选择性细菌STK抑制剂开辟了以前未知的途径。
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引用次数: 0
Insights into the intramembrane protease SPPL2b and its substrates: Functions and disease implications 膜内蛋白酶SPPL2b及其底物的研究:功能和疾病意义
IF 6.7 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-05-06 DOI: 10.1126/scisignal.adt2272
Jack Badman, Antonietta Parracino, Rajnish Kumar, Simone Tambaro
Specialized intramembrane proteases, known as iCLiPs, regulate the processing of transmembrane proteins by releasing intracellular domains, which can function as transcriptional regulators. The signal peptide peptidase–like (SPPL) family of iCLiPs, particularly SPPL2b, has roles in immune regulation, neuronal function, and disease pathogenesis. In the brain, SPPL2b localizes mainly in the plasma membrane of neurons and microglia and is abundant in the cortex and hippocampus. Its known substrates regulate neuronal growth, inflammation, and synaptic function, and increased amounts of SPPL2b have been found in postmortem brain tissue from patients with Alzheimer’s disease. In this review, we discuss the currently known roles of SPPL2b, its substrates, and its disease implications. Understanding the downstream effects of SPPL2b-cleaved substrates will provide clearer insights into the impact of SPPL2b on cellular homeostasis and disease, potentially leading to new therapeutic strategies.
专门的膜内蛋白酶,被称为iclip,通过释放细胞内结构域来调节跨膜蛋白的加工,这些结构域可以作为转录调节剂。iclip的信号肽肽酶样(SPPL)家族,特别是SPPL2b,在免疫调节、神经元功能和疾病发病机制中发挥作用。在大脑中,SPPL2b主要定位于神经元和小胶质细胞的质膜,在皮层和海马中含量丰富。其已知底物调节神经元生长、炎症和突触功能,并且在阿尔茨海默病患者死后脑组织中发现SPPL2b数量增加。在这篇综述中,我们讨论了SPPL2b目前已知的作用、它的底物和它的疾病意义。了解SPPL2b切割底物的下游作用将为SPPL2b对细胞稳态和疾病的影响提供更清晰的见解,可能导致新的治疗策略。
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引用次数: 0
Pericytes under pressure: TRPC3 channels as gatekeepers of capillary flow 压力下的周细胞:TRPC3通道作为毛细血管流动的看门人
IF 6.7 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-04-29 DOI: 10.1126/scisignal.adw7185
Scott Earley
Intrinsic control of cerebral blood flow in response to intravascular pressure is traditionally attributed to smooth muscle cells in arterioles. However, in this issue of Science Signaling, Ferris et al. demonstrate that capillary constriction is caused by pressure-induced depolarization of pericytes, mural cells that encircle capillaries, and is mediated by TRPC3 cation channels, identifying the channel as critical for fine-tuning brain perfusion.
脑血流响应血管内压力的内在控制传统上归因于小动脉中的平滑肌细胞。然而,在本期《Science Signaling》中,Ferris等人证明毛细血管收缩是由包围毛细血管的周细胞(壁细胞)的压力诱导去极化引起的,并由TRPC3阳离子通道介导,确定该通道对微调脑灌注至关重要。
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引用次数: 0
A good side of STING STING好的一面
IF 6.7 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-04-29 DOI: 10.1126/scisignal.ady4818
Leslie K. Ferrarelli
The innate immunity mediator STING senses and repairs lysosomal dysfunction.
先天免疫介质STING感知并修复溶酶体功能障碍。
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引用次数: 0
Increased luminal pressure in brain capillaries drives TRPC3-dependent depolarization and constriction of transitional pericytes 脑毛细血管腔压升高驱动trpc3依赖性去极化和移行周细胞收缩
IF 6.7 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-04-29 DOI: 10.1126/scisignal.ads1903
Hannah R. Ferris, Danielle A. Jeffrey, Mayra Bueno Guerrero, Lutz Birnbaumer, Fang Zheng, Fabrice Dabertrand
Cerebral autoregulation ensures constant blood flow, an essential condition of brain health. A fundamental parameter of the brain circulation is the dynamic regulation of microvessel diameter to allow for adjustments in resistance to blood pressure changes. Pericytes are a family of mural cells that wrap around the capillary endothelium and contribute to the dynamic control of capillary diameter. We sought to determine whether and how brain pericytes constrict in response to blood pressure elevation with in vivo two-photon microscopy, electrophysiology, and ex vivo arteriolar-capillary myography of mice with conditional mural cell knockout or with expression of a genetically encoded Ca2+ indicator. In first- to fourth-order capillaries, pericytes displayed a rapid and measurable response to pressure by decreasing luminal diameter, depolarizing membrane potentials, and increasing cytoplasmic Ca2+ signaling. Pharmacological and imaging approaches revealed that transient receptor potential channel 3 (TRPC3) and voltage-gated Ca2+ channels were sequentially activated to promote fast constriction. Genetic ablation of TRPC3 resulted in decreased currents, loss of membrane depolarization, and near-complete ablation of the generation of tone over a standard pressure curve in transitional pericytes but not in upstream arterioles. Together, our findings identify TRPC3 channel activation as critical for proximal pericyte depolarization and contraction in response to pressure, highlighting the signaling differences between arteriolar and capillary blood flow regulation.
大脑的自动调节保证了血液的持续流动,这是大脑健康的基本条件。脑循环的一个基本参数是微血管直径的动态调节,以适应血压变化的阻力。周细胞是包裹在毛细血管内皮周围的一类壁细胞,参与毛细血管直径的动态控制。我们试图通过体内双光子显微镜、电生理学和体外小动脉-毛细血管肌图来确定脑周细胞是否以及如何收缩以响应血压升高,这些小鼠有条件的壁细胞敲除或基因编码的Ca2+指示剂的表达。在一至四阶毛细血管中,周细胞通过降低管腔直径、去极化膜电位和增加细胞质Ca2+信号传导,对压力表现出快速而可测量的反应。药理学和影像学方法显示瞬时受体电位通道3 (TRPC3)和电压门控Ca2+通道依次激活,促进快速收缩。TRPC3基因消融导致电流减少,膜去极化丧失,在过渡周细胞中,在标准压力曲线上产生的张力几乎完全消融,但在上游小动脉中没有。总之,我们的研究结果确定TRPC3通道激活对于近端周细胞去极化和收缩响应压力至关重要,突出了小动脉和毛细血管血流调节之间的信号差异。
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引用次数: 0
Making complexes less complicated 使复合体不那么复杂
IF 6.7 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-04-22 DOI: 10.1126/scisignal.ady2914
John F. Foley
A blended proteomics platform provides new depth to the proteome of breast cancer.
一个混合蛋白质组学平台为乳腺癌蛋白质组学提供了新的深度。
{"title":"Making complexes less complicated","authors":"John F. Foley","doi":"10.1126/scisignal.ady2914","DOIUrl":"10.1126/scisignal.ady2914","url":null,"abstract":"<div >A blended proteomics platform provides new depth to the proteome of breast cancer.</div>","PeriodicalId":21658,"journal":{"name":"Science Signaling","volume":"18 883","pages":""},"PeriodicalIF":6.7,"publicationDate":"2025-04-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143866098","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Structural robustness and temporal vulnerability of the starvation-responsive metabolic network in healthy and obese mouse liver 健康和肥胖小鼠肝脏中饥饿反应代谢网络的结构稳健性和时间脆弱性
IF 6.7 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-04-22 DOI: 10.1126/scisignal.ads2547
Keigo Morita, Atsushi Hatano, Toshiya Kokaji, Hikaru Sugimoto, Takaho Tsuchiya, Haruka Ozaki, Riku Egami, Dongzi Li, Akira Terakawa, Satoshi Ohno, Hiroshi Inoue, Yuka Inaba, Yutaka Suzuki, Masaki Matsumoto, Masatomo Takahashi, Yoshihiro Izumi, Takeshi Bamba, Akiyoshi Hirayama, Tomoyoshi Soga, Shinya Kuroda
Adaptation to starvation is a multimolecular and temporally ordered process. We sought to elucidate how the healthy liver regulates various molecules in a temporally ordered manner during starvation and how obesity disrupts this process. We used multiomic data collected from the plasma and livers of wild-type and leptin-deficient obese (ob/ob) mice at multiple time points during starvation to construct a starvation-responsive metabolic network that included responsive molecules and their regulatory relationships. Analysis of the network structure showed that in wild-type mice, the key molecules for energy homeostasis, ATP and AMP, acted as hub molecules to regulate various metabolic reactions in the network. Although neither ATP nor AMP was responsive to starvation in ob/ob mice, the structural properties of the network were maintained. In wild-type mice, the molecules in the network were temporally ordered through metabolic processes coordinated by hub molecules, including ATP and AMP, and were positively or negatively coregulated. By contrast, both temporal order and coregulation were disrupted in ob/ob mice. These results suggest that the metabolic network that responds to starvation was structurally robust but temporally disrupted by the obesity-associated loss of responsiveness of the hub molecules. In addition, we propose how obesity alters the response to intermittent fasting.
对饥饿的适应是一个多分子和时间有序的过程。我们试图阐明健康的肝脏如何在饥饿期间以一种暂时有序的方式调节各种分子,以及肥胖如何破坏这一过程。我们利用在饥饿期间多个时间点从野生型和瘦素缺乏型肥胖(ob/ob)小鼠的血浆和肝脏中收集的多组学数据,构建了一个包括响应分子及其调控关系的饥饿响应代谢网络。对网络结构的分析表明,在野生型小鼠中,能量稳态的关键分子ATP和AMP作为中枢分子调节网络中的各种代谢反应。虽然在ob/ob小鼠中,ATP和AMP对饥饿都没有反应,但网络的结构特性得以维持。在野生型小鼠中,网络中的分子通过中枢分子(包括ATP和AMP)协调的代谢过程暂时有序,并受到正向或负向的协同调节。相比之下,ob/ob小鼠的时间秩序和协同调节都被破坏了。这些结果表明,对饥饿作出反应的代谢网络在结构上是健全的,但由于肥胖相关的中枢分子反应性丧失而暂时中断。此外,我们提出肥胖如何改变对间歇性禁食的反应。
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引用次数: 0
Re-epithelialization of cancer cells increases autophagy and DNA damage: Implications for breast cancer dormancy and relapse 癌细胞的再上皮化增加自噬和DNA损伤:对乳腺癌休眠和复发的影响
IF 6.7 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-04-22 DOI: 10.1126/scisignal.ado3473
Diana Drago-Garcia, Suvendu Giri, Rishita Chatterjee, Arturo Simoni-Nieves, Maha Abedrabbo, Alessandro Genna, Mary Luz Uribe Rios, Moshit Lindzen, Arunachalam Sekar, Nitin Gupta, Noa Aharoni, Tithi Bhandari, Agalyan Mayalagu, Luisa Schwarzmüller, Nooraldeen Tarade, Rong Zhu, Harsha-Raj Mohan-Raju, Feride Karatekin, Francesco Roncato, Yaniv Eyal-Lubling, Tal Keidar, Yam Nof, Nishanth Belugali Nataraj, Karin Shira Bernshtein, Bettina Wagner, Nishanth Ulhas Nair, Neel Sanghvi, Ronen Alon, Rony Seger, Eli Pikarsky, Sara Donzelli, Giovanni Blandino, Stefan Wiemann, Sima Lev, Ron Prywes, Dalit Barkan, Oscar M. Rueda, Carlos Caldas, Eytan Ruppin, Yosef Shiloh, Maik Dahlhoff, Yosef Yarden
Cellular plasticity mediates tissue development as well as cancer growth and progression. In breast cancer, a shift to a more epithelial phenotype (epithelialization) underlies a state of reversible cell growth arrest called tumor dormancy, which enables drug resistance, tumor recurrence, and metastasis. Here, we explored the mechanisms driving epithelialization and dormancy in aggressive mesenchymal-like breast cancer cells in three-dimensional cultures. Overexpressing either of the epithelial lineage-associated transcription factors OVOL1 or OVOL2 suppressed cell proliferation and migration and promoted transition to an epithelial morphology. The expression of OVOL1 (and of OVOL2 to a lesser extent) was regulated by steroid hormones and growth factors and was more abundant in tumors than in normal mammary cells. An uncharacterized and indirect target of OVOL1/2, C1ORF116, exhibited genetic and epigenetic aberrations in breast tumors, and its expression correlated with poor prognosis in patients. We further found that C1ORF116 was an autophagy receptor that directed the degradation of antioxidant proteins, including thioredoxin. Through C1ORF116 and unidentified mediators, OVOL1 expression dysregulated both redox homeostasis (in association with increased ROS, decreased glutathione, and redistribution of the transcription factor NRF2) and DNA damage and repair (in association with increased DNA oxidation and double-strand breaks and an altered interplay among the kinases p38-MAPK, ATM, and others). Because these effects, as they accumulate in cells, can promote metastasis and dormancy escape, the findings suggest that OVOLs not only promote dormancy entry and maintenance in breast cancer but also may ultimately drive dormancy exit and tumor recurrence.
细胞可塑性介导组织发育以及癌症的生长和进展。在乳腺癌中,向更上皮表型(上皮化)的转变是一种可逆的细胞生长停滞状态(称为肿瘤休眠)的基础,这使得耐药、肿瘤复发和转移成为可能。在这里,我们探索了三维培养中侵袭性间充质样乳腺癌细胞上皮化和休眠的机制。过表达上皮谱系相关转录因子OVOL1或OVOL2均可抑制细胞增殖和迁移,并促进向上皮形态的转变。OVOL1的表达(以及在较小程度上的OVOL2)受类固醇激素和生长因子的调节,并且在肿瘤中比在正常乳腺细胞中更丰富。OVOL1/2的一个未表征的间接靶点C1ORF116在乳腺肿瘤中表现出遗传和表观遗传畸变,其表达与患者预后不良相关。我们进一步发现,C1ORF116是一种自噬受体,指导抗氧化蛋白(包括硫氧还蛋白)的降解。通过C1ORF116和未知的介质,OVOL1表达失调了氧化还原稳态(与ROS增加、谷胱甘肽减少和转录因子NRF2的再分配有关)和DNA损伤和修复(与DNA氧化和双链断裂增加以及p38-MAPK、ATM等激酶之间相互作用的改变有关)。由于这些作用在细胞中积累,可以促进转移和休眠逃逸,因此研究结果表明,OVOLs不仅可以促进乳腺癌的休眠进入和维持,还可能最终推动休眠退出和肿瘤复发。
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Science Signaling
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