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Spatial prediction of organic carbon in German agricultural topsoil using machine learning algorithms 机器学习算法在德国农业表层土壤有机碳空间预测中的应用
4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2022-09-22 DOI: 10.5194/soil-8-587-2022
Ali Sakhaee, Anika Gebauer, Mareike Ließ, A. Don
Abstract. As the largest terrestrial carbon pool, soil organic carbon (SOC) has thepotential to influence and mitigate climate change; thus, SOC monitoring is of high importancein the frameworks of various international treaties. Therefore, high-resolution SOC maps are required. Machine learning (ML) offers newopportunities to develop these maps due to its ability to data mine largedatasets. The aim of this study was to apply three algorithms commonly usedin digital soil mapping – random forest (RF), boosted regression trees(BRT), and support vector machine for regression (SVR) – on the first Germanagricultural soil inventory to model the agricultural topsoil (0–30 cm) SOCcontent and develop a two-model approach to address the high variability inSOC in German agricultural soils. Model performance is often limited by thesize and quality of the soil dataset available for calibration andvalidation. Therefore, the impact of enlarging the training dataset was testedby including data from the European Land Use/Cover Area frame Surveyfor agricultural sites in Germany. Nested cross-validation was implementedfor model evaluation and parameter tuning. Grid search and the differentialevolution algorithm were also applied to ensure that each algorithm wasappropriately tuned . The SOC content of the German agricultural soilinventory was highly variable, ranging from 4 to 480 g kg−1. However, only 4 % of all soils contained more than 87 g kg−1 SOC and were considered organic or degraded organic soils. Theresults showed that SVR produced the best performance, with a root-mean-square error (RMSE) of 32 g kg−1 when the algorithms were trained on the full dataset. However, theaverage RMSE of all algorithms decreased by 34 % when mineral and organicsoils were modelled separately, with the best result from SVR presenting an RMSE of21 g kg−1. The model performance was enhanced by up to 1 % formineral soils and by up to 2 % for organic soils. Despite the ability of machinelearning algorithms, in general, and SVR, in particular, to model SOC on anational scale, the study showed that the most important aspect forimproving the model performance was to separate the modelling of mineral andorganic soils.
摘要土壤有机碳(SOC)作为最大的陆地碳库,具有影响和减缓气候变化的潜力;因此,SOC监测在各种国际条约框架中具有重要意义。因此,需要高分辨率的SOC图。机器学习(ML)为开发这些地图提供了新的机会,因为它能够对大型数据集进行数据挖掘。本研究的目的是将数字土壤测绘中常用的三种算法——随机森林(RF)、增强回归树(BRT)和回归支持向量机(SVR)——应用于第一次德国农业土壤调查,以模拟农业表土(0-30 cm)的soc含量,并开发一种双模型方法来解决德国农业土壤中soc的高变异性。模型性能通常受到可用于校准和验证的土壤数据集的大小和质量的限制。因此,对扩大训练数据集的影响进行了测试,包括来自德国农业用地的欧洲土地利用/覆盖面积框架调查的数据。嵌套交叉验证用于模型评估和参数调整。网格搜索和差分进化算法也被应用,以确保每个算法都是适当的调整。德国农业土壤的有机碳含量变化很大,在4 ~ 480 g kg−1之间。然而,所有土壤中只有4%的土壤有机碳含量超过87 g kg - 1,被认为是有机或退化有机土壤。结果表明,当算法在完整数据集上训练时,SVR产生了最好的性能,均方根误差(RMSE)为32 g kg−1。然而,当矿物和有机土壤分别建模时,所有算法的平均RMSE降低了34%,SVR的最佳结果显示RMSE为21 g kg - 1。模型性能在矿质土壤中提高了1%,在有机土壤中提高了2%。尽管机器学习算法(尤其是SVR)能够在全国范围内模拟土壤有机碳,但研究表明,提高模型性能的最重要方面是将矿物土壤和有机土壤的建模分离开来。
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引用次数: 7
How well does digital soil mapping represent soil geography? An investigation from the USA 数字土壤制图在多大程度上代表了土壤地理?一项来自美国的调查
4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2022-09-05 DOI: 10.5194/soil-8-559-2022
D. Rossiter, L. Poggio, D. Beaudette, Z. Libohova
Abstract. We present methods to evaluate the spatial patterns of the geographic distribution of soil properties in the USA, as shown in gridded maps produced by digital soil mapping (DSM) at global (SoilGrids v2), national (Soil Properties and Class 100 m Grids of the USA), and regional (POLARIS soil properties) scales and compare them to spatial patterns known from detailed field surveys (gNATSGO and gSSURGO). The methods are illustrated with an example, i.e. topsoil pH for an area in central New York state. A companion report examines other areas, soil properties, and depth intervals. A set of R Markdown scripts is referenced so that readers can apply the analysis for areas of their interest. For the test case, we discover and discuss substantial discrepancies between DSM products and large differences between the DSM products and legacy field surveys. These differences are in whole-map statistics, visually identifiable landscape features, level of detail, range and strength of spatial autocorrelation, landscape metrics (Shannon diversity and evenness, shape, aggregation, mean fractal dimension, and co-occurrence vectors), and spatial patterns of property maps classified by histogram equalization. Histograms and variogram analysis revealed the smoothing effect of machine learning models. Property class maps made by histogram equalization were substantially different, but there was no consistent trend in their landscape metrics. The model using only national points and covariates was not substantially different from the global model and, in some cases, introduced artefacts from a lithology covariate. Uncertainty (5 %–95 % confidence intervals) provided by SoilGrids and POLARIS were unrealistically wide compared to gNATSGO/gSSURGO low and high estimated values and show substantially different spatial patterns. We discuss the potential use of the DSM products as a (partial) replacement for field-based soil surveys. There is no substitute for actually examining and interpreting the soil–landscape relation, but despite the issues revealed in this study, DSM can be an important aid to the soil surveyor.
摘要我们提出了评估美国土壤性质地理分布的空间格局的方法,如数字土壤制图(DSM)在全球(SoilGrids v2)、国家(soil properties and Class 100 m Grids of USA)和区域(POLARIS soil properties)尺度上生成的网格图所示,并将其与详细的实地调查(gNATSGO和gSSURGO)所知的空间格局进行比较。以纽约州中部某地区的表层土壤pH值为例说明了该方法。一份配套报告考察了其他地区、土壤性质和深度间隔。本文引用了一组R Markdown脚本,以便读者可以将分析应用于他们感兴趣的领域。对于测试用例,我们发现并讨论了DSM产品之间的实质性差异,以及DSM产品与遗留现场调查之间的巨大差异。这些差异体现在全图统计、视觉可识别的景观特征、细节水平、空间自相关的范围和强度、景观指标(香农多样性和均匀度、形状、聚集、平均分形维数和共现向量)以及直方图均衡化分类的属性图的空间格局。直方图和方差分析揭示了机器学习模型的平滑效果。直方图均衡化方法绘制的地物分类图差异较大,但景观指标变化趋势不一致。仅使用国家点和协变量的模型与全球模型没有本质上的不同,并且在某些情况下,引入了来自岩性协变量的伪象。与gNATSGO/gSSURGO的低值和高低值相比,SoilGrids和POLARIS提供的不确定性(5% - 95%置信区间)大得不切实际,呈现出明显不同的空间格局。我们讨论了DSM产品作为(部分)替代现场土壤调查的潜在用途。没有什么可以替代实际检查和解释土壤-景观关系,但是尽管本研究中揭示了一些问题,DSM可以成为土壤测量员的重要辅助。
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引用次数: 4
Soil nutrient contents and stoichiometry within aggregate size classes varied with tea plantation age and soil depth in southern Guangxi in China 桂南茶园土壤团聚粒级的养分含量和化学计量特征随茶园树龄和土壤深度的不同而不同
4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2022-07-28 DOI: 10.5194/soil-8-487-2022
Ling Mao, S. Ye, Sheng-qiang Wang
Abstract. Soil ecological stoichiometry offers a tool to explore the distribution,cycling, limitation, and balance of chemical elements in tea plantationecosystems. This study aimed to explore how soil organic C (OC) and nutrientcontents (total N (TN), total P (TP), Ca2+, Mg2+, Fe2+, andMn2+) as well as their stoichiometric ratios (C/N, C/P, N/P, Ca/Mg, andFe/Mn) varied with tea plantation age (8, 17, 25, and 43 years) and soildepth (0–10, 10–20, 20–40, and 40–60 cm) within aggregates in southern Guangxi in China. Our results showed that tea plantation age and soil depthsignificantly affected soil nutrient stoichiometry in different sizes ofaggregates. Among different ages of tea plantations, soil OC, TN, and TPcontents as well as C/N, C/P, and N/P ratios significantly decreased as thesoil depth increased. In addition, soil Ca2+ and Mg2+ contentswere significantly lower in the surface soil layer than the deeper soillayer, whereas soil Fe2+ and Mn2+ contents showed opposite trends,and no significant differences were detected in Ca/Mg and Fe/Mn ratios amongdifferent soil depths. At the 0–40 cm soil depth, continuous planting of teacorresponded to increases in soil OC, TN, Fe2+, and Mn2+ contents, whereas soil Ca2+ and Mg2+ contents significantlydecreased over time. During the process of tea growth, the losses of soilCa2+ and Mg2+, especially Ca2+ (as indicated by the decreasein the soil Ca/Mg ratio), led to soil acidification, which reduced Fe2+ absorption and enhanced Mn2+ uptake by tea plants (as indicated by theincrease in the soil Fe/Mn ratio). In general, tea plantation age affected the variations of soil nutrient contents and stoichiometry, and such effectswere more obvious at the 0–40 cm soil depth, in contrast to the 40–60 cm soil depth.
摘要土壤生态化学计量学为研究茶园生态系统中化学元素的分布、循环、限制和平衡提供了工具。本研究旨在探讨桂南茶树团聚体土壤有机碳(OC)和养分含量(全N (TN)、全P (TP)、Ca2+、Mg2+、Fe2+和mn2 +)及其化学计量比(C/N、C/P、N/P、Ca/Mg和fe /Mn)随茶树树龄(8、17、25和43年)和土壤深度(0-10、10-20、20-40和40-60 cm)的变化规律。结果表明,茶园年龄和土壤深度对不同团聚体大小的土壤养分化学计量有显著影响。不同年龄茶园土壤有机质、全氮和全磷含量以及C/N、C/P和N/P比值随土壤深度的增加而显著降低。此外,表层土壤Ca2+和Mg2+含量显著低于深层土壤,而土壤Fe2+和Mn2+含量呈相反趋势,Ca/Mg和Fe/Mn在不同土壤深度间无显著差异。在0 ~ 40 cm土壤深度,连续种植土壤OC、TN、Fe2+和Mn2+含量增加,而Ca2+和Mg2+含量随时间显著降低。在茶叶生长过程中,土壤Ca2+和Mg2+特别是Ca2+的流失(表现为土壤Ca/Mg比值的降低)导致土壤酸化,从而降低茶树对Fe2+的吸收,增强茶树对Mn2+的吸收(表现为土壤Fe/Mn比值的增加)。总体而言,茶园树龄影响土壤养分含量和化学计量的变化,且这种影响在0 ~ 40 cm土壤深度更为明显,而在40 ~ 60 cm土壤深度则相反。
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引用次数: 5
Miniaturised visible and near-infrared spectrometers for assessing soil health indicators in mine site rehabilitation 用于评估矿区修复土壤健康指标的小型化可见和近红外光谱仪
4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2022-07-18 DOI: 10.5194/soil-8-467-2022
Zefang Shen, Haylee M. D’Agui, L. Walden, Mingxi Zhang, Tsoek Man Yiu, K. Dixon, P. Nevill, A. Cross, Mohana Matangulu, Yangfang Hu, R. V. Viscarra Rossel
Abstract. Mining can cause severe disturbances to the soil, which underpins the viability of terrestrial ecosystems. Post-mining rehabilitation relies on measuring soil properties that are critical indicators of soil health. Soil visible–near-infrared (vis–NIR) spectroscopy is rapid, accurate, and cost-effective for estimating a range of soil properties. Recent advances in infrared detectors and microelectromechanical systems (MEMSs) have produced miniaturised, relatively inexpensive spectrometers. Here, we evaluate the spectra from four miniaturised visible and NIR spectrometers, some combinations, and a full-range vis–NIR spectrometer for modelling 29 soil physical, chemical, and biological properties used to assess soil health at mine sites. We collected topsoil samples from reference, undisturbed native vegetation, and stockpiles from seven mines in Western Australia. We evaluated the spectrometers' repeatability and the accuracy of spectroscopic models built with seven statistical and machine learning algorithms. The spectra from the visible spectrometer could estimate sand, silt, and clay with similar or better accuracy than the NIR spectrometers. However, the spectra from the NIR spectrometers produced better estimates of soil chemical and biological properties. By combining the miniaturised visible and NIR spectrometers, we improved the accuracy of their soil property estimates, which were similar to those from the full-range spectrometer. The miniaturised spectrometers and combinations predicted 24 of the 29 soil properties with moderate or greater accuracy (Lin's concordance correlation, ρc≥0.65). The repeatability of the NIR spectrometers was similar to that of the full-range, portable spectrometer. The miniaturised NIR spectrometers produced comparably accurate soil property estimates to the full-range portable system which is an order of magnitude more expensive, particularly when combined with the visible range sensor. Thus, the miniaturised spectrometers could form the basis for a rapid, cost-effective soil diagnostic capacity to support mine site rehabilitation and deliver significant positive economic and environmental outcomes.
摘要采矿可能对土壤造成严重干扰,而土壤是陆地生态系统生存的基础。采矿后恢复依赖于测量土壤特性,这些特性是土壤健康的关键指标。土壤可见-近红外光谱(vis-NIR)是一种快速、准确、经济有效的估算土壤性质的方法。红外探测器和微机电系统(mems)的最新进展已经生产出小型化、相对便宜的光谱仪。在这里,我们评估了四个小型化的可见光和近红外光谱仪,一些组合,以及一个全范围的可见光-近红外光谱仪的光谱,用于模拟29种土壤物理,化学和生物特性,用于评估矿区土壤健康。我们从西澳大利亚州的七个矿山中收集了参考、未受干扰的原生植被和库存的表土样本。我们用7种统计和机器学习算法评估了光谱仪的可重复性和光谱模型的准确性。可见光光谱仪的光谱可以估计沙子、淤泥和粘土,其精度与近红外光谱仪相似或更好。然而,来自近红外光谱仪的光谱可以更好地估计土壤的化学和生物特性。通过结合小型化的可见光和近红外光谱仪,我们提高了土壤性质估计的准确性,其结果与全量程光谱仪的结果相似。微型光谱仪和组合预测29种土壤性质中的24种具有中等或更高的精度(林的一致性相关系数,ρc≥0.65)。近红外光谱仪的重复性与全量程便携式光谱仪相似。小型化的近红外光谱仪与全范围便携式系统相比,产生了相当精确的土壤性质估计,而全范围便携式系统的价格要贵一个数量级,特别是当与可见距离传感器结合使用时。因此,小型化光谱仪可以构成快速、具有成本效益的土壤诊断能力的基础,以支持矿区的恢复,并产生重大的积极的经济和环境成果。
{"title":"Miniaturised visible and near-infrared spectrometers for assessing soil health indicators in mine site rehabilitation","authors":"Zefang Shen, Haylee M. D’Agui, L. Walden, Mingxi Zhang, Tsoek Man Yiu, K. Dixon, P. Nevill, A. Cross, Mohana Matangulu, Yangfang Hu, R. V. Viscarra Rossel","doi":"10.5194/soil-8-467-2022","DOIUrl":"https://doi.org/10.5194/soil-8-467-2022","url":null,"abstract":"Abstract. Mining can cause severe disturbances to the soil, which underpins the viability of terrestrial ecosystems. Post-mining rehabilitation relies on measuring soil properties that are critical indicators of soil health. Soil visible–near-infrared (vis–NIR) spectroscopy is rapid, accurate, and cost-effective for estimating a range of soil properties. Recent advances in infrared detectors and microelectromechanical systems (MEMSs) have produced miniaturised, relatively inexpensive spectrometers. Here, we evaluate the spectra from four miniaturised visible and NIR spectrometers, some combinations, and a full-range vis–NIR spectrometer for modelling 29 soil physical, chemical, and biological properties used to assess soil health at mine sites. We collected topsoil samples from reference, undisturbed native vegetation, and stockpiles from seven mines in Western Australia. We evaluated the spectrometers' repeatability and the accuracy of spectroscopic models built with seven statistical and machine learning algorithms. The spectra from the visible spectrometer could estimate sand, silt, and clay with similar or better accuracy than the NIR spectrometers. However, the spectra from the NIR spectrometers produced better estimates of soil chemical and biological properties. By combining the miniaturised visible and NIR spectrometers, we improved the accuracy of their soil property estimates, which were similar to those from the full-range spectrometer. The miniaturised spectrometers and combinations predicted 24 of the 29 soil properties with moderate or greater accuracy (Lin's concordance correlation, ρc≥0.65). The repeatability of the NIR spectrometers was similar to that of the full-range, portable spectrometer. The miniaturised NIR spectrometers produced comparably accurate soil property estimates to the full-range portable system which is an order of magnitude more expensive, particularly when combined with the visible range sensor. Thus, the miniaturised spectrometers could form the basis for a rapid, cost-effective soil diagnostic capacity to support mine site rehabilitation and deliver significant positive economic and environmental outcomes.\u0000","PeriodicalId":22015,"journal":{"name":"Soil Science","volume":"19 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-07-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"88733631","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Identification of thermal signature and quantification of charcoal in soil using differential scanning calorimetry and benzene polycarboxylic acid (BPCA) markers 用差示扫描量热法和苯聚羧酸(BPCA)标记物鉴定土壤中木炭的热特征和定量
4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2022-07-08 DOI: 10.5194/soil-8-451-2022
B. Hardy, N. Borchard, J. Leifeld
Abstract. Black carbon (BC) plays an important role in terrestrialcarbon storage and can sustainably improve soil fertility. However, theaccurate quantification of BC remains critical to fully unravelling thefunctions and dynamics of BC in soil. In this study, we explored thepotential of differential scanning calorimetry (DSC) to identify,characterize and quantify charcoal in the soil of pre-industrial charcoalkiln sites from various forest and cropland areas in Belgium and Germany.Pre-industrial charcoals and uncharred soil organic matter (SOM)demonstrated a distinct thermal signature that could be used to distinguishbetween them, with charcoal being more thermally stable than SOM. The DSCpattern of charcoals was characterized by one to three specific exothermic peaks,varying in size and position depending on soil conditions. Our data suggestthat the thermal moieties within charcoal depend on the strength of chemicalbonds of C atoms (increasing with the degree of aromatic condensation anddecreasing with weathering) and on the activation energy required toinitiate combustion. Despite the specific thermal features of charcoal, itsdecomposition spans a wide range of temperatures that overlaps with thethermal signature of uncharred SOM. This stresses the challenge of BCquantification in soil and hinders the use of cut-off temperatures toaccurately quantify charcoal in soil. Therefore, charcoal-C content wasestimated from the relative height of exothermic peaks, attributed either to thecombustion of charcoal or SOM. For a selection of 45 soil samples,charcoal-C content estimated by DSC was compared to benzene polycarboxylicacid (BPCA) abundance, a widely used method to quantify BC in soil. The twomethods correlated strongly (R2=0.97), with BPCA Crepresenting about one-fifth of DSC-derived charcoal C. This reinforces theview that operationally defined BC content has an absolute quantitativevalue only if the recovery rate is controlled, which is very complicated formany case studies. Overall, our results demonstrate that dynamic thermalanalysis is largely under-exploited despite providing quantitativelyinterpretable information across the continuum of SOM.
摘要黑碳在陆地碳储存中起着重要作用,能够持续提高土壤肥力。然而,准确的定量仍然是充分揭示土壤中BC的功能和动态的关键。在这项研究中,我们探索了差示扫描量热法(DSC)在鉴定、表征和量化比利时和德国不同森林和农田地区工业化前炭窑遗址土壤中木炭的潜力。工业化前的木炭和未烧焦的土壤有机质(SOM)表现出明显的热特征,可以用来区分它们,木炭比SOM更热稳定。不同土壤条件下,炭的dsc分布特征为1 ~ 3个特定的放热峰,其大小和位置随土壤条件的不同而变化。我们的数据表明,木炭中的热组分取决于C原子化学键的强度(随着芳香缩合程度的增加而增加,随着风化而减少)和启动燃烧所需的活化能。尽管木炭具有特定的热特征,但其分解的温度范围很广,与未烧焦的SOM的热特征重叠。这强调了土壤中碳量化的挑战,并阻碍了使用截止温度来准确量化土壤中的碳。因此,炭- c含量是根据由木炭或SOM燃烧引起的放热峰的相对高度来估计的。选取了45个土壤样品,将DSC估算的碳碳含量与苯聚羧酸(BPCA)丰度进行了比较,BPCA是一种广泛使用的量化土壤中碳碳含量的方法。这两种方法相关性很强(R2=0.97),其中BPCA约占dsc衍生木炭c的五分之一。这加强了这样一种观点,即只有在回收率得到控制的情况下,操作定义的BC含量才具有绝对的定量值,这对于许多案例研究来说是非常复杂的。总体而言,我们的研究结果表明,尽管动态热分析在SOM连续体中提供了定量可解释的信息,但在很大程度上尚未得到充分利用。
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引用次数: 2
The effect of tillage depth and traffic management on soil properties and root development during two growth stages of winter wheat (Triticum aestivum L.) 耕作深度和交通管理对冬小麦两个生育期土壤性质和根系发育的影响
4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2022-05-31 DOI: 10.5194/soil-8-391-2022
D. Hobson, M. Harty, Saoirse R. Tracy, K. Mcdonnell
Abstract. The management of agricultural soils during crop establishment can affectroot development due to changes in the soil structure. This paper assesses theinfluence of tillage depth (250 mm, 100 mm, and zero tillage) and traffic management(conventional tyre pressure, low tyre pressure, and no traffic) on wheatroot system architecture during winter wheat (Triticum aestivum L.) tillering and floweringgrowth stages (GS) at a long-term tillage trial site. The study revealedthat zero-tillage systems increased crop yield through significantly greaterroot biomass (P<0.001), root length density, and deeper seminalrooting analysed using X-ray computed tomography (CT) (P<0.001)compared with trafficked treatments. In general, conventional-pressuretraffic had a significant negative influence on the crop yield (P<0.01), root development (0.001), bulk density (P<0.05), and totalsoil porosity (P<0.05) of deep- and shallow-tillage conventional-pressure systems compared with no-traffic zero- and deep-tillage systems. Visualimprovements in soil structure under zero-tillage conditions may have improved croprooting in zero-tillage treatments through vertical pore fissures(biopores), enhancing water uptake during the crop flowering period. Thisstudy highlights the increasing implications of soil structural damage onroot system architecture created by machinery traffic in cropproduction. Although the tillage method was less important, the constricted rootsystems were more pronounced in conventional-pressure shallow-tillage anddeep-tillage systems, emphasizing the importance of using controlled-trafficfarming methods to improve soil management and reduce the trafficked areasof agricultural fields.
摘要由于土壤结构的变化,作物育成期间的农业土壤管理会影响根系的发育。在一个长期耕作试验地,研究了不同耕作深度(250 mm、100 mm和免耕作)和交通管理(常规胎压、低胎压和不耕作)对冬小麦分蘖期和开花生长期根系结构的影响。研究发现,与常规处理相比,免耕系统通过显著增加根系生物量(P<0.001)、根长密度和更深的半生根(P<0.001)来提高作物产量。总体而言,常规压力交通对深耕和浅耕常规压力系统的作物产量(P<0.01)、根系发育(P< 0.001)、容重(P<0.05)和土壤总孔隙度(P<0.05)的影响显著低于无交通的零耕和深耕系统。免耕条件下土壤结构的视觉改善可能通过垂直孔隙裂缝(生物孔)改善免耕处理下的作物根系,增加作物开花期间的水分吸收。这项研究强调了作物生产中机械交通造成的土壤结构破坏对根系结构的影响越来越大。尽管耕作方式不太重要,但在常规压力浅耕和深耕系统中,根系收缩更为明显,这强调了使用控制交通的耕作方法来改善土壤管理和减少农田交通面积的重要性。
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引用次数: 4
The application of biochar and oyster shell reduced cadmium uptake by crops and modified soil fertility and enzyme activities in contaminated soil 生物炭和牡蛎壳的施用降低了作物对镉的吸收,改善了土壤肥力和土壤酶活性
4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2022-05-31 DOI: 10.5194/soil-8-409-2022
Bin Wu, Jia Li, Mingping Sheng, He Peng, Dinghua Peng, Heng Xu
Abstract. Soil pollution with cadmium (Cd) has been threatening the human health. In this study, we investigated the possibility of applying biochar and oyster shell to reduce Cd uptake by crops and modify soil quality. A field study based on the rice–oilseed rape rotation was done, and the treatments were comprised without amendments (PA0) and with 15 000 kg ha−1 biochar (PA1), 15 000 kg ha−1 oyster shell (PA2), and 7500 kg ha−1 biochar and 7500 kg ha−1 oyster shell(PA3). Results revealed that both oyster shell and biochar reduced theHOAc-extractable Cd in soil. Compared to PA0, the HOAc-extractable Cd in the PA1, PA2, and PA3 treatments was reduced by 4.76 %–20.79 %, 17.86 %–38.61 %, and 5.95 %–10.89 %, respectively. The cooperative application of biochar and oyster shell reduced the Cd accumulation in brown rice and oilseed by 29.67 % and 19.74 %, respectively, compared to control and thus decreased the hazard quotient (HQ) from the consumption of brown rice and oilseed. The addition of biochar slightly increased soil organic matter. In addition, the available P in the PA2 and PA3 treatments was significantly (p<0.05) increased by 200.96 %–295.92 % and 187.46 %–280.04 % compared to the control. Moreover, the cooperative application of biochar and oyster shell enhanced the activities of urease, catalase, and β-galactosidase by 139.44 %–147.56 %, 10.71 %–34.31 %, and 82.08 %–244.38 %, respectively. These results demonstrated that the utilization of biochar and oyster shell might be an effective pathway to reducing Cd uptake by crops and improving soil fertility and enzyme activities.
摘要土壤镉污染已严重威胁着人类的健康。在本研究中,我们探讨了施用生物炭和牡蛎壳降低作物对Cd的吸收和改善土壤质量的可能性。在水稻-油菜轮作的基础上进行了田间试验,处理包括不加改性剂(PA0)、15 000 kg ha - 1生物炭(PA1)、15 000 kg ha - 1牡蛎壳(PA2)、7500 kg ha - 1生物炭和7500 kg ha - 1牡蛎壳(PA3)。结果表明,牡蛎壳和生物炭均能降低土壤中hoac可提取Cd的含量。与PA0处理相比,PA1、PA2和PA3处理的hoac可萃取Cd分别降低4.76% ~ 20.79%、17.86% ~ 38.61%和5.95% ~ 10.89%。与对照相比,生物炭与牡蛎壳配合施用使糙米和油籽Cd累积量分别降低了29.67%和19.74%,从而降低了糙米和油籽消耗的危害系数(HQ)。生物炭的添加使土壤有机质略有增加。此外,PA2和PA3处理的有效磷含量较对照显著(P <0.05)提高了200.96% ~ 295.92%和187.46% ~ 280.04%。此外,生物炭与牡蛎壳配合施用,脲酶、过氧化氢酶和β-半乳糖苷酶的活性分别提高了139.44% ~ 147.56%、10.71% ~ 34.31%和82.08% ~ 244.38%。这些结果表明,生物炭和牡蛎壳的利用可能是减少作物对Cd的吸收,提高土壤肥力和酶活性的有效途径。
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引用次数: 4
What comes after the Sun? On the integration of soil biogeochemical pre-weathering into microplastic experiments 太阳之后是什么?土壤生物地球化学预风化与微塑性试验的整合研究
4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2022-05-23 DOI: 10.5194/soil-8-373-2022
F. Büks, M. Kaupenjohann
Abstract. Recent studies have been engaged in estimating the adverse effects of microplastic (MP) on soil quality parameters. Mass concentrations of MP, as found in highly contaminated soils, have been shown to weaken the soil structure, and parts of the edaphon are adversely affected mainly by the<100 µm MP size fraction. However, the vast majority of these studies used pristine particles, which have surface characteristics different from those of environmental MP. Exposed to UV radiation, plasticundergoes photochemical weathering with embrittlement and the formation of surface charge, leading to an alteration of physiochemical behavior. When plastic particles then enter the soil environment, further aging factors appear with yet unknown efficacy. This little explored soil biogeochemical phase includes biofilm cover, decay with enzymes (as shown in laboratory experiments with both conventional and biodegradable plastics), contact with biotic and abiotic acids, oxidants, and uptake by the soil fauna that causes physical fragmentation. Such transformation of the surfaces is assumed to affect soil aggregation processes, soil faunal health, and the transport ofplastic colloids and adsorbed solubles. This perspective article encourages us to consider the weathering history of MP in soil experiments and highlights the need for reproducing the surface characteristics of soil MP to conduct laboratory experiments with closer-to-nature results.
摘要近年来,人们对微塑料对土壤质量参数的不利影响进行了研究。在高污染土壤中发现的高质量浓度的多聚磷已被证明会削弱土壤结构,部分土壤主要受到<100µm多聚磷粒径分数的不利影响。然而,这些研究绝大多数使用的是原始颗粒,其表面特征与环境MP不同。暴露在紫外线辐射下,塑料经历光化学风化,产生脆化和表面电荷,导致物理化学行为的改变。当塑料颗粒进入土壤环境时,进一步的老化因素出现,其效力尚不得而知。这个很少被探索的土壤生物地球化学阶段包括生物膜覆盖、酶的腐烂(如常规和可生物降解塑料的实验室实验所示)、与生物和非生物酸、氧化剂的接触,以及被土壤动物吸收导致物理破碎。这种表面的转变被认为会影响土壤聚集过程、土壤动物健康以及塑料胶体和吸附的可溶性物质的运输。这篇前瞻性文章鼓励我们在土壤实验中考虑MP的风化历史,并强调需要再现土壤MP的表面特征,以便进行更接近自然结果的实验室实验。
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引用次数: 4
"Patient's Family Wants an Update": A Curriculum for Senior Medical Students to Deliver Telephone Updates for Hospitalized Patients. "病人家属希望了解最新情况":高年级医学生为住院病人提供电话更新信息的课程。
4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2022-05-20 eCollection Date: 2022-01-01 DOI: 10.15766/mep_2374-8265.11256
Christopher J Edwards, James T Fitzgerald, Lauren A Heidemann

Introduction: Residents have the important task of updating family members of hospitalized patients, often by telephone. There are limited curricula dedicated to preparing medical students for this task, which will become their responsibility as residents.

Methods: We created a virtual workshop, including four patient cases, to facilitate teaching senior medical students enrolled in an internal medicine residency preparation course. Students alternated role-playing either physician or family member. We assessed performance using a self-assessment rubric before (preworkshop) and after (postworkshop) a didactic session. We compared pre- and postworkshop scores using t tests. We also used a retrospective pre-post survey with a 5-point Likert scale to assess each participant's comfort level, knowledge, and perceived ability.

Results: Thirty-nine students completed the pre- and postworkshop evaluation (response rate: 70%). The mean score on the preworkshop self-assessment was 83% (SD = 9%) and on the postworkshop self-assessment was 94% (SD = 8%; p < .01), with a large effect size of 1.22. Among the 31 students (62%) who completed the survey, there was improvement in comfort level (2.9 vs. 3.7, p < .001), knowledge (2.7 vs. 3.8, p < .001), and perceived ability (2.9 vs. 3.7, p < .001).

Discussion: Our workshop was effective in teaching medical students a structured format for providing telephone updates and was well received. The workshop was also effective when delivered virtually (with videos off) to mimic the non-face-to-face communication that occurs when delivering family updates by telephone. The curriculum could be expanded to other learner groups.

导言:住院医师的一项重要任务是向住院病人的家属提供最新信息,通常是通过电话。专门为医学生准备这项任务的课程有限,而这将成为他们作为住院医生的责任:方法:我们创建了一个虚拟工作坊,其中包括四个病人病例,以方便教授参加内科住院医师培训课程的高年级医学生。学生们交替扮演医生或家庭成员。我们在授课前(工作坊前)和授课后(工作坊后)使用自我评估表对学生的表现进行评估。我们使用 t 检验比较了工作坊前和工作坊后的得分。我们还采用了一项事后回顾调查,用 5 点李克特量表来评估每位学员的舒适度、知识和感知能力:39 名学生完成了工作坊前后的评估(回复率:70%)。工作坊前自我评估的平均得分率为 83%(SD = 9%),工作坊后自我评估的平均得分率为 94%(SD = 8%;P < .01),影响大小为 1.22。在完成调查的 31 名学生(62%)中,舒适度(2.9 vs. 3.7,p < .001)、知识(2.7 vs. 3.8,p < .001)和感知能力(2.9 vs. 3.7,p < .001)均有所提高:我们的研讨会有效地向医科学生传授了提供电话更新的结构化格式,并受到好评。通过虚拟方式(关闭视频)模拟电话告知家属最新情况时的非面对面交流,也能有效提高培训班的效果。该课程可扩展至其他学员群体。
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引用次数: 0
Soil bacterial communities triggered by organic matter inputs associates with a high-yielding pear production 有机质输入引发的土壤细菌群落与梨高产有关
4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2022-05-05 DOI: 10.5194/soil-8-337-2022
Li Wang, Xiaomei Ye, Han J Hu, Jing Du, Yonglan Xi, Zongzhuan Shen, Jing Lin, Deli Chen
Abstract. The roles of microorganisms in enhancing crop productionhave been demonstrated for a range of cropping systems. Most studies todate, however, have been confined to a limited number of locations, makingit difficult to identify general soil biotic and abiotic characteristicsunderpinning the yield-promotion across various locations. This knowledgegap limits our capacity to harness soil microbiome to improve cropproduction. Here we used high-throughput amplicon sequencing to investigatethe common features of bacterial community composition, ecological networksand physicochemical properties in six yield-invigorating and adjacentyield-debilitating orchards. We found that yield-invigorating soilsexhibited higher contents of organic matter than yield-debilitating soilsand harbored unique bacterial communities. Greater alpha diversity andhigher relative abundances of Planctomycetota and Chloroflexota wereobserved in yield-debilitating soils. Co-occurrence network analysisrevealed that yield-invigorating soils displayed a greater number offunctionally interrelated modules (meta-modules) and a higher proportion ofnegative links to positive links. Chloroflexota was recognized as a keystonetaxon in manipulating the interaction of bacterial communities inyield-invigorating soils. Altogether, we provide evidence thatyield-invigorating soils across a range of locations appear to share commonfeatures, including accumulation of soil organic matter, higher microbialdiversity, enrichment of key taxa like Chloroflexota and maintaining acompetitive network. These findings have implications for science-basedguidance for sustainable food production.
摘要微生物在提高作物产量方面的作用已在一系列种植制度中得到证实。然而,迄今为止的大多数研究都局限于有限数量的地点,这使得很难确定支撑不同地点产量促进的一般土壤生物和非生物特征。这种知识差距限制了我们利用土壤微生物群提高作物产量的能力。利用高通量扩增子测序技术,研究了6个高产果园和邻接果园细菌群落组成、生态网络和理化性质的共同特征。我们发现,增产土壤的有机质含量高于减产土壤,并拥有独特的细菌群落。在产量衰弱型土壤中观察到更大的α多样性和更高的相对丰度。共现网络分析表明,增产土壤具有更多的功能相关模块(元模块)和更高比例的负相关链接。氯氟草被认为是调控增产土壤细菌群落相互作用的关键类群。总之,我们提供的证据表明,在一系列地区,提高产量的土壤似乎具有共同的特征,包括土壤有机质的积累、更高的微生物多样性、氯氟草属等关键类群的丰富以及保持竞争网络。这些发现对可持续粮食生产的科学指导具有启示意义。
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引用次数: 3
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Soil Science
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