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Crystal Structure, Aromatic Character and AM1 Calculations of 2-(N’-Benzylidenehydrazino)-4-trifluoromethyl-pyrimidine and 2-(N’-2-Methylbenzylidenehydrazino)-5-methyl-4-trifluoromethyl-pyrimidine 2-(N ' -苄基肼基)-4-三氟甲基嘧啶和2-(N ' -2-甲基苄基肼基)-5-甲基-4-三氟甲基嘧啶的晶体结构、芳族性质和AM1计算
Pub Date : 2010-06-22 DOI: 10.2174/1874846501003010059
S. S. Amaral, P. T. Campos, Josiane M. dos Santos, L. S. Fernandes, M. Martins, H. Bonacorso, N. Zanatta
The structure of two novel 2-(N'-benzylidenehydrazino)-4-trifluoromethyl-pyrimidines has been determined by X-ray crystallography and their energy-minimized structures were stablished by molecular orbital calculations (AM1) by means of comparison. Additionally, the bond lengths of the compounds were analyzed in order to verify the occurance of electronic resonance. Bond lengths and bond angles in the pyrimidine ring and the benzylidene portion compare well with those found in similar compounds. 2-(N'-benzylidenehydrazino)-4-trifluoromethyl-pyrimidine, crystallized in the triclinic space group P-1 solvated with a molecule of water, while 2-(N'-2-methyl-benzylidenehydrazino)-5-methyl-4- trifluoromethyl-pyrimidine crystallized in the tetragonal space group P41. The azomethine moieties showed a trans-planar conformation. The energy-minimized structures of both compounds are in good agreement with their X-ray crystal structures. Nevertheless, a significant difference between calculated and experimental data regarding to the ring planarity was observed due to relevant intermolecular interactions in the real structures. Finally, aromaticities of both pyrimidines and phenyl rings were determined using HOMA calculations.
用x射线晶体学确定了两种新型的2-(N′-苄基肼基)-4-三氟甲基嘧啶的结构,并通过比较,用分子轨道计算(AM1)确定了它们的能量最小化结构。此外,分析了化合物的键长,以验证电子共振的发生。嘧啶环和苄基部分的键长和键角与同类化合物中的键长和键角比较好。2-(N'-苄基肼基)-4-三氟甲基嘧啶在三斜空间基P-1中结晶,而2-(N'-2-甲基苄基肼基)-5-甲基-4-三氟甲基嘧啶在四方空间基P41中结晶。亚甲基部分呈跨平面构象。两种化合物的能量最小化结构与它们的x射线晶体结构一致。然而,由于实际结构中相关的分子间相互作用,环平面度的计算数据与实验数据存在显著差异。最后,用HOMA计算确定了嘧啶和苯环的芳构性。
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引用次数: 6
Dinuclear Gold(III) Complexes as Potential Anticancer Agents: Structure, Reactivity and Biological Profile of a Series of Gold(III) Oxo-Bridged Derivatives~!2009-12-08~!2010-01-15~!2010-03-25~! 作为潜在抗癌剂的双核金(III)配合物:一系列金(III)氧桥衍生物的结构、反应性和生物学性质
Pub Date : 2010-04-07 DOI: 10.2174/1874846501003020029
C. Gabbiani, A. Guerri, M. Cinellu, L. Messori
Six homologous gold(III) dinuclear oxo-bridged complexes, of the type [(bipy)Au(μ-O)2Au(bipy)][PF6]2, bearing variously substituted 2,2’-bipyridine ligands (bipy = 2,2’-bipyridine, 4,4’-di-tert-butyl-, 6-methyl-, 6-neopentyl-, 6-o-xylyland 6,6’-dimethyl-2,2’-bipyridine), here called Auoxos, were prepared, characterised and recently tested as potential anticancer agents. Crystal structures were obtained for five members of the series that allowed us to perform detailed comparative analyses. Interestingly, the various Auoxos showed an acceptable stability profile in buffer solution and turned out to manifest outstanding antitumor properties in vitro. In particular, one member of this family, Auoxo6 (bipy = 6,6’-dimethyl-2,2’-bipyridine), produced more selective and far greater antiproliferative effects than all other tested Auoxos, qualifying itself as the best “drug candidate”. In turn, COMPARE analysis of the cytotoxicity profiles of five Auoxos, toward an established panel of thirty-six human tumor cell lines, revealed important mechanistic differences; a number of likely biomolecular targets could thus be proposed such as HDAC and PKC. Biophysical studies revealed markedly different modes of interaction with calf thymus DNA for two representative Auoxo compounds. In addition, a peculiar reactivity with model proteins was documented on the ground of spectrophotometric and ESI MS data, most likely as the result of redox processes. In view of the several experimental evidences gathered so far, it can be stated that Auoxos constitute a novel family of promising cytotoxic gold compounds with an innovative mechanism of action that merit a more extensive pharmacological evaluation.
本文制备了6个同源的金(III)双核氧桥配合物,类型为[(bipy)Au(μ-O)2Au(bipy)][PF6]2,含有不同取代的2,2 ' -联吡啶配体(bipy = 2,2 ' -联吡啶,4,4 ' -二叔丁基-,6-甲基-,6-新戊基-,6-o-xylyland 6,6 ' -二甲基-2,2 ' -联吡啶),这里称为Auoxos,并对其进行了表征,最近被测试为潜在的抗癌剂。获得了该系列中五个成员的晶体结构,使我们能够进行详细的比较分析。有趣的是,各种Auoxos在缓冲液中表现出可接受的稳定性,并在体外表现出出色的抗肿瘤性能。特别是,该家族的一个成员,Auoxo6 (bipy = 6,6 ' -二甲基-2,2 ' -联吡啶),比所有其他测试的Auoxos产生更强的选择性和更大的抗增殖作用,使其成为最佳的“候选药物”。反过来,对五种Auoxos的细胞毒性谱进行了比较分析,对36种人类肿瘤细胞系进行了研究,揭示了重要的机制差异;因此,许多可能的生物分子靶标可以被提出,如HDAC和PKC。生物物理研究表明,两种具有代表性的Auoxo化合物与小牛胸腺DNA的相互作用模式明显不同。此外,根据分光光度法和ESI MS数据,与模型蛋白的特殊反应性被记录下来,很可能是氧化还原过程的结果。鉴于目前收集到的几个实验证据,可以认为Auoxos是一个具有创新作用机制的有前景的细胞毒性金化合物的新家族,值得进行更广泛的药理学评价。
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引用次数: 10
Hot Topic: [Recent Advances in the Field of Metal Based Drugs: From Structural Studies, Towards Biological Properties, And Innovative Strategies For Drug Delivery (Guest Editor: Renzo Cini)] 热点话题:[金属基药物领域的最新进展:从结构研究,到生物特性,以及药物递送的创新策略[客座编辑:Renzo Cini]]
Pub Date : 2010-04-07 DOI: 10.2174/1874846501003010014
Renzo Renzo
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引用次数: 0
Synthesis, Crystal Structure and Spectroscopic Studies of 1-(p- Bromphenyl)-3,5 Diphenylformazan~!2010-01-08~!2010-02-04~!2010-03-26~! 1-(对-溴苯基)-3,5二苯基甲醛的合成、晶体结构及光谱研究2010-01-08 2010-02-04 2010-03-26
Pub Date : 2010-04-07 DOI: 10.2174/1874846501003010054
T. Tunç, L. Yıldırım
In this study, novel 1-substituted-phenyl-3,5-diphenylformazans were synhesized with –Br group at p-positions. Their structures were elucidated by elemental analyses, UV–vis and IR spectroscopy and X-ray single crystal structure determination. Their UV–vis spectra indicated that their λmax showed a shift amount of which was dependent upon the position of the substituent on the ring. The title compound, 1-(p-bromphenyl)-3,5 diphenylformazan, crystallizes in the orthorombic P bca space group, with a=7.9526(9)Å, b=18.611(2) Å, c=23.099(2) Å. The final cycle of refinement was converged to R = 0.0703. The big part of the molecule is coplanar. The molecular conformation is maintained by an intramolecular N-HN hydrogen bond. Keywords: Formazan, X-ray, organic compound, crystal
structure.

 INTRODUCTION Formazans are compounds containing the characteristic azohydrazone group (-N=N-C=N-NH-), which is a good carrier of π -bonding and chelating properties. They are widely used as dyes, as ligands in complex formation reactions, and as analytical reagents, where their deep colour makes them good indicators of redox reactions [1, 2]. Formazans form salts and complexes with several metal ions, and especially the transition metal ions. Their derivatives with electron donating and withdrawing group attached to 1,3,5phenyl ring were synthesized and the effects of substituents on the absorption λmax values were examined. They are also biologically active and there is much interest in their biological applications [3]. Various 1 and 3-substituted formazans were synthesized and, the effect of substituents evaluated by using UV-vis and IR spectra [4, 5]. The biological activity of formazan makes the knowledge of its oxidation potentials and possible mechanisms very important. In the present study, a noval formazan complex with substituent on 1-phenyl ring has been synthesized and its structure was determined using the X-ray diffraction method and characterized with spectroscopic techniques. The structure of formazan complex molecule is given in Fig. (1). MATERIALS AND METHODOLOGY General Procedures and Materials All starting reagents and solvents were purchased from Merck, Sigma-Aldrich Chemical Co. and used without further purification. IR spectrum was recorded on a MATTSON 1000 FT-IR spectrophotometer with range 4000–625 cm *Address correspondence to this author at the Science Education Department, Faculty of Education, Aksaray University, Aksaray, Turkey; Tel: +90 506 5057102; Fax: +90 382 2801180; E-mail: tctunc@gmail.com using KBr pellets. Absorption spectra were obtained with UNICAM UV2-100 UV–vis spectrophotometer using 1 cm quartz cells in 10 mol l methanol in the range of 192.2– 600 nm. Elemental analyses for (C, H, N) were performed using a LECO CHNS 932 elemental analyzer. Fig. (1). Chemical diagram of 1-(p-bromphenyl)-3,5 diphenylformazan. Synthesis of 1-(p-Bromphenyl)-3,5 Diphenylformazan For the synthesis, dissolved Benzaldehyde (2.12 g, 0.02 mol) in 12
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引用次数: 3
EDITORIAL: Recent Advances in the Field of Metal Based Drugs: from Structural Studies, Towards Biological Properties, and Innovative Strategies for Drug Delivery 社论:金属基药物领域的最新进展:从结构研究到生物特性,以及药物传递的创新策略
Pub Date : 2010-04-07 DOI: 10.2174/1874846501003020014
R. Cini
The rationale is that a deep knowledge of crystal and molecular structures is fundamental for the development of metal based drugs, for understanding their mechanism of action and for designing suitable materials for efficiently administering the drugs themselves. X-ray crystallography represents the main way for gathering accurate structural information. Thus, inviting authors, reviewers, editors and publishers to take care of the enormous pool of information that can be obtained from X-ray structures is a duty that crystallography oriented journals should cultivate with tireless efforts.
其基本原理是,对晶体和分子结构的深入了解是开发金属基药物、理解其作用机制和设计合适的材料以有效地给药的基础。x射线晶体学是收集精确结构信息的主要方法。因此,邀请作者、审稿人、编辑和出版商来照顾从x射线结构中获得的巨大信息库是晶体学期刊应该不懈努力培养的责任。
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引用次数: 0
Thiosemicarbazone Metal Complexes: From Structure to Activity~!2009-12-08~!2010-01-13~!2010-03-25~! 硫代氨基脲类金属配合物:从结构到活性
Pub Date : 2010-04-07 DOI: 10.2174/1874846501003020016
G. Pelosi
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引用次数: 141
Metal-Oxicam Coordination Compounds: Structure, Biological Activity and Strategies for Administration~!2009-12-08~!2010-01-14~!2010-03-25~! 金属-奥昔康配位化合物的结构、生物活性及给药策略
Pub Date : 2010-04-07 DOI: 10.2174/1874846501003020041
G. Tamasi
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引用次数: 23
Dinuclear Gold(III) Complexes as Potential Anticancer Agents: Structure, Reactivity and Biological Profile of a Series of Gold(III) Oxo-BridgedDerivatives 作为潜在抗癌剂的双核金(III)配合物:一系列金(III)氧桥衍生物的结构、反应性和生物学特性
Pub Date : 2010-03-25 DOI: 10.2174/1874846501003010029
C. Gabbiani, A. Guerri, M. Cinellu, L. Messori
Six homologous gold(III) dinuclear oxo-bridged complexes, of the type ((bipy nR )Au(µ-O) 2 Au(bipy nR ))(PF 6 ) 2 , bearing variously substituted 2,2'-bipyridine ligands (bipy nR = 2,2'-bipyridine, 4,4'-di-tert-butyl-, 6-methyl-, 6-neopentyl-, 6-o-xylyl- and 6,6'-dimethyl-2,2'-bipyridine), here called Auoxos, were prepared, characterised and recently tested as potential anticancer agents. Crystal structures were obtained for five members of the series that allowed us to perform detailed comparative analyses. Interestingly, the various Auoxos showed an acceptable stability profile in buffer solution and turned out to manifest outstanding antitumor properties in vitro. In particular, one member of this family, Auoxo6 (bipy nR = 6,6'-dimethyl-2,2'-bipyridine), produced more selective and far greater antiproliferative effects than all other tested Auoxos, qualifying itself as the best "drug candidate". In turn, COMPARE analysis of the cytotoxicity profiles of five Auoxos, toward an established panel of thirty-six human tumor cell lines, revealed important mechanistic differences; a number of likely biomolecular targets could thus be proposed such as HDAC and PKC. Biophysical studies revealed markedly different modes of interaction with calf thymus DNA for two representative Auoxo compounds. In addition, a peculiar reactivity with model proteins was documented on the ground of spectrophotometric and ESI MS data, most likely as the result of redox processes. In view of the several experimental evidences gathered so far, it can be stated that Auoxos constitute a novel family of promising cytotoxic gold compounds with an innovative mechanism of action that merit a more extensive pharmacological evaluation.
六种金(III)双核氧桥配合物,类型为((bipy nR)Au(µ- o) 2 Au(bipy nR))(PF 6) 2,含有不同取代的2,2'-联吡啶配体(bipy nR = 2,2'-联吡啶,4,4'-二叔丁基-,6-甲基-,6-新戊基-,6-o-基-和6,6'-二甲基-2,2'-联吡啶),这里称为Auoxos,被制备,表征和最近测试为潜在的抗癌剂。获得了该系列中五个成员的晶体结构,使我们能够进行详细的比较分析。有趣的是,各种Auoxos在缓冲液中表现出可接受的稳定性,并在体外表现出出色的抗肿瘤性能。特别是,该家族的一个成员,Auoxo6 (bipy nR = 6,6'-二甲基-2,2'-联吡啶),比所有其他测试的Auoxos产生更强的选择性和更大的抗增殖作用,使其成为最佳的“候选药物”。反过来,对五种Auoxos的细胞毒性谱进行了比较分析,对36种人类肿瘤细胞系进行了研究,揭示了重要的机制差异;因此,许多可能的生物分子靶标可以被提出,如HDAC和PKC。生物物理研究表明,两种具有代表性的Auoxo化合物与小牛胸腺DNA的相互作用模式明显不同。此外,根据分光光度法和ESI MS数据,与模型蛋白的特殊反应性被记录下来,很可能是氧化还原过程的结果。鉴于目前收集到的几个实验证据,可以认为Auoxos是一个具有创新作用机制的有前景的细胞毒性金化合物的新家族,值得进行更广泛的药理学评价。
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引用次数: 2
Effect of Free Water Molecules on the Structure of Mg-ATPDipyridylamine and Overview on Selected Metal-Adenosine Triphosphate Structures in Model Compounds and in Enzymes~!2009-08-29~!2009-12-08~!2010-02-08~! 游离水分子对mg - atpdipydylamine结构的影响及模型化合物和酶中金属-三磷酸腺苷结构的研究综述
Pub Date : 2010-03-05 DOI: 10.2174/1874846501003010001
G. Tamasi, F. Berrettini, M. Hursthouse, R. Cini
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引用次数: 3
A Novel Copper Complex with Multibridging Coordination Mode: Synthesis, Structure, Luminescent and Magnetic Properties 一种新型多桥配位铜配合物的合成、结构、发光和磁性能
Pub Date : 2009-10-01 DOI: 10.2174/1874846500902010015
He-lin Niu, Jingguang Chenb, Ju-zhou Zhang, Wei Caoa, Qianwang Chen
A novel three-dimensional (3D) metal-organic framework (MOF), (Cu5(C10H7N2O2)4(N3)2(SO4)2)n (1), was constructed by a hydrothermal process at 160 o C. The complex 1 exhibits strong emission at 396 nm in solid state. Importantly, the variable-temperature magnetic susceptibility study indicates that there exists strong antiferromagnetic interactions between the copper atoms with C = 0.87 cm 3 mol -1 K and � = -320.2 K.
在160℃的高温下,水热法制备了一种新型的三维金属有机骨架(Cu5(C10H7N2O2)4(N3)2(SO4)2)n(1)。重要的是,变温磁化率研究表明,当C = 0.87 cm 3 mol -1 K和C = -320.2 K时,铜原子之间存在强的反铁磁相互作用。
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引用次数: 0
期刊
The Open Crystallography Journal
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