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Transcriptional Targets of TWIST1 in Human Mesenchymal Stem/Stromal Cells Mechanistically Link Stem/Progenitor and Paracrine Functions. 人间质干细胞/基质细胞中 TWIST1 的转录靶标在机制上将干细胞/祖细胞和旁分泌功能联系起来。
IF 4 2区 医学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-12-14 DOI: 10.1093/stmcls/sxad070
Christopher L Haga, Cori N Booker, Ana Carvalho, Siddaraju V Boregowda, Donald G Phinney

Despite extensive clinical testing, mesenchymal stem/stromal cell (MSC)-based therapies continue to underperform with respect to efficacy, which reflects the paucity of biomarkers that predict potency prior to patient administration. Previously, we reported that TWIST1 predicts inter-donor differences in MSC quality attributes that confer potency. To define the full spectrum of TWIST1 activity in MSCs, the present work employed integrated omics-based profiling to identify a high-confidence set of TWIST1 targets, which mapped to cellular processes related to ECM structure/organization, skeletal and circulatory system development, interferon gamma signaling, and inflammation. These targets are implicated in contributing to both stem/progenitor and paracrine activities of MSCs indicating these processes are linked mechanistically in a TWIST1-dependent manner. Targets implicated in extracellular matrix dynamics further implicate TWIST1 in modulating cellular responses to niche remodeling. Novel TWIST1-regulated genes identified herein may be prioritized for future mechanistic and functional studies.

尽管进行了广泛的临床测试,但基于间充质干细胞/间质干细胞(MSC)的疗法在疗效方面仍然表现不佳,这反映出在给患者用药前预测疗效的生物标志物很少。此前,我们曾报道 TWIST1 可预测间充质干细胞质量属性的供体间差异,从而赋予疗效。为了确定 TWIST1 在间充质干细胞中的全部活性,本研究采用了基于全局组学的综合分析方法来确定一组高置信度的 TWIST1 靶点,这些靶点与 ECM 结构/组织、骨骼和循环系统发育、γ 干扰素信号转导和炎症相关的细胞过程相对应。这些靶点与间充质干细胞的干/祖细胞活性和旁分泌活性都有关联,表明这些过程在机理上以依赖 TWIST1 的方式联系在一起。与细胞外基质动力学有关的靶点进一步表明 TWIST1 在调节细胞对生态位重塑的反应。本文发现的新的 TWIST1 调控基因可优先用于未来的机理和功能研究。
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引用次数: 0
Engineering Critical Residues of SOX9 Discovers a Variant With Potent Capacity to Induce Chondrocytes. 对 SOX9 的关键残基进行工程改造,发现了一种具有诱导软骨细胞能力的变体。
IF 5.2 2区 医学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-12-14 DOI: 10.1093/stmcls/sxad066
Yuya Sekiguchi, Aya Fukuda, Ken Nishimura, Koji Hisatake

Articular cartilage plays vital roles as a friction minimizer and shock absorber during joint movement but has a poor capacity to self-repair when damaged through trauma or disease. Cartilage tissue engineering is an innovative technique for cartilage regeneration, yet its therapeutic application requires chondrocytes in large numbers. Direct reprogramming of somatic cells to chondrocytes by expressing SOX9, KLF4, and c-MYC offers a promising option to generate chondrocytes in sufficient numbers; however, the low efficiency of the reprogramming system warrants further improvement. Here we referred to structural and functional features of SOX9 and performed alanine-scanning mutagenesis of functionally critical residues in the HMG box and at putative posttranslational modification (PTM) sites. We discovered that a SOX9 variant H131A/K398A, doubly mutated in the HMG box (H131) and at a PTM site (K398), significantly upregulated expression of chondrogenic genes and potently induced chondrocytes from mouse embryonic fibroblasts. The H131A/K398A variant remained unsumoylated in cells and exhibited a stronger DNA-binding activity than wild-type SOX9, especially when complexed with other proteins. Our results show that the novel SOX9 variant may be useful for efficient induction of chondrocytes and illuminate the strategic feasibility of mutating a transcription factor at functionally critical residues to expedite discovery of an optimized reprogramming factor.

关节软骨在关节运动过程中起着减少摩擦和吸收冲击的重要作用,但当软骨因创伤或疾病受损时,其自我修复能力却很差。软骨组织工程是软骨再生的创新技术,但其治疗应用需要大量软骨细胞。通过表达 SOX9、KLF4 和 c-MYC 将体细胞直接重编程为软骨细胞,为生成足够数量的软骨细胞提供了一种有前景的选择;然而,重编程系统的低效率需要进一步改进。在此,我们参考了 SOX9 的结构和功能特征,并对 HMG 盒和推测的翻译后修饰(PTM)位点的功能关键残基进行了丙氨酸扫描诱变。我们发现,在HMG框(H131)和PTM位点(K398)发生双重突变的SOX9变体H131A/K398A能显著上调软骨基因的表达,并能有效诱导小鼠胚胎成纤维细胞中的软骨细胞。与野生型 SOX9 相比,H131A/K398A 变体在细胞中保持未umoylated 状态,并表现出更强的 DNA 结合活性,尤其是在与其他蛋白复合时。我们的研究结果表明,新型 SOX9 变体可能有助于高效诱导软骨细胞,并阐明了在功能关键残基上突变转录因子以加速发现优化重编程因子的战略可行性。
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引用次数: 0
Mechanisms of Alveolar Type 2 Epithelial Cell Death During Acute Lung Injury. 急性肺损伤期间肺泡 2 型上皮细胞死亡的机制
IF 5.2 2区 医学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-12-14 DOI: 10.1093/stmcls/sxad074
Xiaofeng Qi, Yali Luo, Mengyong Xiao, Qiuju Zhang, Jing Luo, Linna Ma, Linfeng Ruan, Nini Lian, Yongqi Liu

Diffuse alveolar epithelial cell (AEC) death occurs extensively during acute lung injury (ALI). Due to the limited proliferative capacity of alveolar type 1 epithelial (AT1) cells, the differentiation and regenerative capacity of alveolar type 2 epithelial (AT2) cells are required to restore the barrier function of AECs. However, during lung injury, AT1 cells are particularly susceptible to injury, and ATII cells die in the presence of severe or certain types of injury. This disruption ultimately results in a hindrance to the ability of AT2 cells to proliferate and differentiate into AT1 cells in time to repair the extensively damaged AECs. Therefore, understanding the mechanism of injury death of AT2 cells may be beneficial to reverse the above situation. This article reviews the main death modes of AT2 cells, including apoptosis, necrosis, necroptosis, pyroptosis, autophagic cell death, and ferroptosis. It compares the various forms of death, showing that various cell injury death modes have unique action mechanisms and partially overlapping pathways. Studying the mechanism of AT2 cell death is helpful in screening and analyzing the target pathway of AEC barrier function recovery. It opens up new ideas and strategies for preventing and treating ALI.

肺泡上皮细胞(AEC)的弥漫性死亡广泛发生在急性肺损伤(ALI)期间。由于肺泡1型上皮细胞(AT1)的增殖能力有限,因此需要肺泡2型上皮细胞(AT2)的分化和再生能力来恢复肺泡上皮细胞的屏障功能。然而,在肺损伤期间,AT1 细胞特别容易受到损伤,而 ATII 细胞则会在严重或某些类型的损伤中死亡。这种破坏最终导致 AT2 细胞无法及时增殖并分化成 AT1 细胞,从而无法修复广泛受损的 AEC。因此,了解AT2细胞的损伤死亡机制可能有利于扭转上述局面。本文综述了AT2细胞的主要死亡方式,包括凋亡、坏死、坏死突变、热突变、自噬细胞死亡和铁突变。文章对各种死亡方式进行了比较,表明各种细胞损伤死亡方式具有独特的作用机制和部分重叠的途径。研究 AT2 细胞死亡机制有助于筛选和分析 AEC 屏障功能恢复的靶途径。它为预防和治疗 ALI 开辟了新的思路和策略。
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引用次数: 0
Production and Limbal Lineage Commitment of Aniridia Patient-Derived Induced Pluripotent Stem Cells. Aniridia 患者衍生的诱导多能干细胞的生成和肢端系定向。
IF 5.2 2区 医学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-12-14 DOI: 10.1093/stmcls/sxad067
Tanja Ilmarinen, Meri Vattulainen, Jeyalakshmi Kandhavelu, Dominique Bremond-Gignac, Daniel Aberdam, Heli Skottman

Congenital aniridia is caused by heterozygous mutations on the PAX6 gene leading to reduced amount of PAX6 protein (haploinsufficiency), abnormal eye development, and aniridia-associated keratopathy (AAK). This progressive corneal opacification resembles late-onset limbal stem cell (LSC) deficiency, leading to disrupted corneal epithelial renewal. The factors leading to AAK are not known and defects in native LSC differentiation and/or features leading to ocular surface dysfunction like inflammation and loss of innervation could contribute to development of AAK. Here, we produced induced pluripotent stem cells (hiPSC) from 3 AAK patients and examined whether PAX6 haploinsufficiency affects LSC lineage commitment. During LSC differentiation, characterization of the AAK lines showed lowered PAX6 expression as compared to wild type (WT) controls and expression peak of PAX6 during early phase of differentiation was detected only in the WT hiPSC lines. Whether it reflects developmental regulation remains to be studied further. Nevertheless, the AAK-hiPSCs successfully differentiated toward LSC lineage, in line with the presence of LSCs in young patients before cell loss later in life. In addition, patient-specific LSCs showed similar wound healing capacity as WT cells. However, extensive batch-related variation in the LSC marker expression and wound healing efficacy was detected without clear correlation to AAK. As development and maintenance of corneal epithelium involves an interplay between LSCs and their environment, the AAK-hiPSCs generated here can be further used to study the crosstalk between LSCs and limbal niche including, eg, corneal immune cells, stroma cells, and neurons.

先天性无角膜症是由于 PAX6 基因的杂合突变导致 PAX6 蛋白量减少(单倍体缺乏)、眼球发育异常和无角膜症相关角膜病(AAK)引起的。这种进行性角膜不透明类似于晚发性角膜缘干细胞(LSC)缺乏症,会导致角膜上皮更新紊乱。导致AAK的因素尚不清楚,本地LSC分化缺陷和/或导致炎症和神经支配丧失等眼表功能障碍的特征可能是AAK发展的原因。在这里,我们从3名AAK患者中培育出了诱导多能干细胞(hiPSC),并研究了PAX6单倍体缺陷是否会影响LSC的系承。在LSC分化过程中,与野生型(WT)对照组相比,AAK株系的特征显示PAX6表达量降低,而且仅在WT hiPSC株系中检测到PAX6在分化早期达到表达峰值。这是否反映了发育调控还有待进一步研究。尽管如此,AAK-hiPSCs 还是成功地向 LSC 系分化,这与年轻患者在晚期细胞丢失之前存在 LSCs 的情况一致。此外,患者特异性 LSCs 显示出与 WT 细胞相似的伤口愈合能力。然而,在 LSC 标记表达和伤口愈合能力方面发现了广泛的批次相关性差异,但与 AAK 没有明确的相关性。由于角膜上皮的发育和维持涉及造血干细胞及其环境之间的相互作用,因此本研究中产生的AAK-hiPSCs可进一步用于研究造血干细胞与角膜免疫细胞、基质细胞和神经元等角膜生态位之间的相互影响。
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引用次数: 0
Lethal Phenotype-Based Database Screening Identifies Ceramide as a Negative Regulator of Primitive Streak Formation. 基于致死表型的数据库筛选确定神经酰胺是原始条纹形成的负调控因子。
IF 5.2 2区 医学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-12-14 DOI: 10.1093/stmcls/sxad071
Jing Pu, Satoshi Kofuji, Yoshimi Okamoto-Uchida, Keiko Danzaki, Ruoxing Yu, Akira Suzuki, Satoshi Kitajima, Hiroshi Nishina

In early embryogenesis, the primitive streak (PrS) generates the mesendoderm and is essential for organogenesis. However, because the PrS is a minute and transient tissue, elucidating the mechanism of its formation has been challenging. We performed comprehensive screening of 2 knockout mouse databases based on the fact that failure of PrS formation is lethal. We identified 812 genes involved in various cellular functions and responses that might be linked to PrS formation, with the category of greatest abundance being "Metabolism." In this study, we focused on genes of sphingolipid metabolism and investigated their roles in PrS formation using an in vitro mouse ES cell differentiation system. We show here that elevated intracellular ceramide negatively regulates gene expression essential for PrS formation and instead induces neurogenesis. In addition, sphingosine-1-phosphate (a ceramide derivative) positively regulates neural maturation. Our results indicate that ceramide regulates both PrS formation and the induction of neural differentiation.

在早期胚胎发生中,原始条纹(PrS)产生间胚层,对器官发生至关重要。然而,由于PrS是一种微小而短暂的组织,因此阐明其形成机制一直具有挑战性。基于PrS形成失败是致命的这一事实,我们对2个敲除小鼠数据库进行了全面筛选。我们鉴定了812个参与各种细胞功能和反应的基因,这些基因可能与PrS的形成有关,其中丰度最高的一类是“代谢”。在本研究中,我们重点研究了鞘脂代谢基因,并使用体外小鼠ES细胞分化系统研究了它们在PrS形成中的作用。我们在这里表明,升高的细胞内神经酰胺负调控PrS形成所必需的基因表达,反而诱导神经发生。此外,鞘氨醇-1-磷酸(一种神经酰胺衍生物)正向调节神经成熟。我们的结果表明神经酰胺调节PrS的形成和神经分化的诱导。
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引用次数: 0
Application of Organoids in Regenerative Medicine. 有机体在再生医学中的应用。
IF 5.2 2区 医学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-12-14 DOI: 10.1093/stmcls/sxad072
Yinghua Wu, Wenrui Ye, Yong Gao, Zhenjie Yi, Zhuohui Chen, Chunrun Qu, Jing Huang, Fangkun Liu, Zhixiong Liu

Regenerative medicine mainly relies on heterologous transplantation, often hindered by sample availability and ethical issues. Furthermore, patients are required to take immunosuppressive medications to prevent adverse side effects. Stem cell-derived 3D-organoid culture has provided new alternatives for transplantation and regenerative medicine. Scholars have combined organoids with tissue engineering technology to improve reproducibility, the accuracy of constitution and throughput, and genetic correction to achieve a more personalized therapy. Here, we review the available applications of organoids in regenerative medicine and the current challenges concerning this field.

再生医学主要依赖异源移植,但往往受到样本供应和伦理问题的阻碍。此外,患者还需要服用免疫抑制药物以防止不良副作用。干细胞衍生的三维类器官培养为移植和再生医学提供了新的选择。学者们已将类器官与组织工程技术结合起来,以提高可重复性、构成的准确性和通量,并通过基因校正实现更个性化的治疗。在此,我们回顾了器官组织在再生医学中的应用以及该领域目前面临的挑战。
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引用次数: 1
Research Models to Mimic Necrotizing Enterocolitis and Inflammatory Bowel Diseases: Focus on Extracellular Vesicles Action. 模拟坏死性小肠结肠炎和炎症性肠病的研究模型:关注细胞外囊泡的作用。
IF 5.2 2区 医学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-12-14 DOI: 10.1093/stmcls/sxad068
Miriam Duci, Ludovica De Cesare, Agner Henrique Dorigo Hochuli, Maurizio Muraca, Mara Cananzi, Piergiorgio Gamba, Francesco Fascetti-Leon, Michela Pozzobon

This review focuses on the crucial role of the intestinal epithelium in maintaining intestinal homeostasis and its significance in the pathogenesis of necrotizing enterocolitis (NEC) and inflammatory bowel diseases (IBD). NEC is a devastating neonatal disease, while IBD represents a global healthcare problem with increasing incidence. The breakdown of the intestinal barrier in neonates is considered pivotal in the development and progression of both disorders. This review provides an overview of the current state of in vitro, ex vivo, and animal models to study epithelial injury in NEC and IBD, addressing pertinent questions that engage clinicians and researchers alike. Despite significant advancements in early recognition and aggressive treatment, no single therapy has been conclusively proven effective in reducing the severity of these disorders. Although early interventions have improved clinical outcomes, NEC and IBD continue to impose substantial morbidity, mortality, and economic burdens on affected individuals and society. Consequently, exploring alternative therapeutic options capable of preventing and treating the sequelae of NEC and IBD has become a pressing necessity. In recent decades, extracellular vehicles (EVs) have emerged as a potential solution to modulate the pathogenic mechanism in these multifactorial and complex disorders. Despite the diverse array of proposed models, a comprehensive model to investigate and decelerate the progression of NEC and IBD remains to be established. To bridge the translational gap between preclinical studies and clinical applications, enhancements in the technical development of gut-on-a-chip models and EVs hold considerable promise.

这篇综述的重点是肠上皮在维持肠道平衡中的关键作用及其在坏死性小肠结肠炎(NEC)和炎症性肠病(IBD)发病机制中的重要性。坏死性小肠结肠炎是一种破坏性的新生儿疾病,而炎症性肠病则是发病率不断上升的全球性医疗保健问题。新生儿肠道屏障的破坏被认为是这两种疾病发生和发展的关键。本综述概述了研究 NEC 和 IBD 上皮损伤的体外、体内和动物模型的现状,探讨了临床医生和研究人员共同关心的相关问题。尽管在早期识别和积极治疗方面取得了重大进展,但目前还没有任何一种疗法能有效降低这些疾病的严重程度。虽然早期干预改善了临床疗效,但 NEC 和 IBD 仍给患者和社会带来了巨大的发病率、死亡率和经济负担。因此,探索能够预防和治疗 NEC 和 IBD 后遗症的替代疗法已成为当务之急。近几十年来,细胞外载体(EVs)已成为调节这些多因素复杂疾病致病机制的潜在解决方案。尽管提出了各种各样的模型,但研究和减缓 NEC 和 IBD 进展的综合模型仍有待建立。为了弥合临床前研究与临床应用之间的转化差距,加强肠道芯片模型和 EV 的技术开发大有可为。
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引用次数: 0
Division-Independent Differentiation of Muscle Stem Cells During a Growth Stimulus 肌肉干细胞在生长刺激过程中的独立分裂分化
IF 5.2 2区 医学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-12-08 DOI: 10.1093/stmcls/sxad091
Ahmed Ismaeel, Jensen Goh, C. B. Mobley, Kevin A. Murach, Jamie O Brett, Antoine de Morrée, Thomas A Rando, Charlotte A. Peterson, Yuan Wen, John J. McCarthy
Adult muscle stem cells (MuSCs) are known to replicate upon activation before differentiating and fusing to regenerate myofibers. It is unclear whether MuSC differentiation is intrinsically linked to cell division, which has implications for stem cell population maintenance. We use single-cell RNA-seq (scRNA-seq) to identify transcriptionally diverse subpopulations of MuSCs after 5 days of a growth stimulus in adult muscle. Trajectory inference in combination with a novel mouse model for tracking MuSC-derived myonuclei and in vivo labeling of DNA replication revealed a MuSC population that exhibited division-independent differentiation and fusion. These findings demonstrate that in response to a growth stimulus in the presence of intact myofibers, MuSC division is not obligatory.
众所周知,成体肌肉干细胞(musc)在分化和融合以再生肌纤维之前会在激活后进行复制。目前尚不清楚MuSC分化是否与细胞分裂有内在联系,这对干细胞群的维持有影响。我们使用单细胞RNA-seq (scRNA-seq)来鉴定成年肌肉中生长刺激5天后的MuSCs转录多样性亚群。轨迹推断与一种新的小鼠模型相结合,用于跟踪MuSC衍生的肌核和DNA复制的体内标记,揭示了MuSC群体表现出独立于分裂的分化和融合。这些发现表明,在完整肌纤维存在的情况下,对生长刺激的反应,MuSC分裂不是强制性的。
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引用次数: 0
Automated Generation of hiPSC-Derived Hepatic Progeny by Cost-Efficient Compounds. 高效化合物自动生成hipsc衍生的肝脏后代。
IF 5.2 2区 医学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-11-05 DOI: 10.1093/stmcls/sxad065
Gert Vanmarcke, Jonathan Sai-Hong Chui, Axelle Cooreman, Kristof De Vos, Lana Cleuren, Rob Van Rossom, Guillem García-Llorens, Teresa Izuel Idoype, Ruben Boon, Manoj Kumar Gautam, José V Castell, Pieter Annaert, Frederic Lluis, Catherine M Verfaillie

Human pluripotent stem cell (hPSC)-derived hepatocyte-like cells (HLCs) hold great promise for liver disease modeling, drug discovery, and drug toxicity screens. Yet, several hurdles still need to be overcome, including among others decrease in the cost of goods to generate HLCs and automation of the differentiation process. We here describe that the use of an automated liquid handling system results in highly reproducible HLC differentiation from hPSCs. This enabled us to screen 92 chemicals to replace expensive growth factors at each step of the differentiation protocol to reduce the cost of goods of the differentiation protocol by approximately 79%. In addition, we also evaluated several recombinant extracellular matrices to replace Matrigel. We demonstrated that differentiation of hPSCs on Laminin-521 using an optimized small molecule combination resulted in HLCs that were transcriptionally identical to HLCs generated using the growth factor combinations. In addition, the HLCs created using the optimized small molecule combination secreted similar amounts of albumin and urea, and relatively low concentrations of alfa-fetoprotein, displayed similar CYP3A4 functionality, and a similar drug toxicity susceptibility as HLCs generated with growth factor cocktails. The broad applicability of the new differentiation protocol was demonstrated for 4 different hPSC lines. This allowed the creation of a scalable, xeno-free, and cost-efficient hPSC-derived HLC culture, suitable for high throughput disease modeling and drug screenings, or even for the creation of HLCs for regenerative therapies.

人多能干细胞(hPSC)衍生的肝细胞样细胞(HLCs)在肝病建模、药物发现和药物毒性筛选方面具有巨大的前景。然而,仍有几个障碍需要克服,其中包括降低产生HLC的商品成本和差异化过程的自动化。我们在这里描述了自动液体处理系统的使用导致HLC与hPSC的高度可重复分化。这使我们能够在分化方案的每一步筛选92种化学物质来取代昂贵的生长因子,从而将分化方案的商品成本降低约79%。此外,我们还评估了几种重组细胞外基质来取代Matrigel。我们证明,使用优化的小分子组合在Lamin-521上分化hPSCs会产生与使用生长因子组合产生的HLCs在转录上相同的HLCs。此外,使用优化的小分子组合产生的HLCs分泌类似量的白蛋白和尿素,以及相对低浓度的甲胎蛋白,显示出与生长因子混合物产生的HLC相似的CYP3A4功能和相似的药物毒性易感性。新的分化方案对4种不同的hPSC品系具有广泛的适用性。这允许创建可扩展的、无外源性的、成本效益高的hPSC衍生的HLC培养物,适用于高通量疾病建模和药物筛选,甚至适用于创建用于再生疗法的HLC。
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引用次数: 1
Correction to: TGF-β secreted by human umbilical cord blood-derived mesenchymal stem cells ameliorates atopic dermatitis by inhibiting secretion of TNF-α and IgE. 更正:人脐带血来源的间充质干细胞分泌的TGF-β通过抑制TNF-α和IgE的分泌来改善特应性皮炎。
IF 5.2 2区 医学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-11-05 DOI: 10.1093/stmcls/sxad073
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引用次数: 0
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