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Integrative modeling of longitudinal cell-free DNA and tumor volume dynamics: a multimodal quantitative prognostic framework. 纵向无细胞DNA和肿瘤体积动力学的综合建模:一个多模态定量预后框架。
IF 3.5 2区 医学 Q2 ONCOLOGY Pub Date : 2025-11-30 Epub Date: 2025-11-27 DOI: 10.21037/tlcr-2025-940
Jihwan Choi, Jooyong Shim, Jonghoon Kim, Yeon Jeong Kim, Changha Hwang, Woong-Yang Park, Jae Myoung Noh, Hongryull Pyo, Ho Yun Lee

Background: Liquid biopsy based on cell-free DNA (cfDNA) in oncology has emerged as a promising technique for tracking cancer dynamics, especially for detecting minimal residual disease. To date, most studies have used cfDNA for static evaluations of tumor burden. In this study, we propose a novel approach integrating serial cfDNA and computed tomography (CT) tumor volume to fully reflect the dynamic nature of tumor response after treatment.

Methods: This prospective study involved 25 patients treated with curative-intent radiotherapy for localized non-small cell lung cancer (NSCLC) between June 2019 and November 2020, with 17 subsequently included in final analysis. Longitudinal blood samples were divided into two phases relative to day 3 after treatment initiation, and kinetic parameters, such as velocity and acceleration of cfDNA levels, were calculated. To complement sparse samplings in later days, volume data from routine CT scans were incorporated. K-means clustering using two different variable sets (cfDNA only and cfDNA with volume parameters) and conventional assessment using Response Evaluation Criteria in Solid Tumors (RECIST) v1.1 were applied to stratify patients, and their performance was compared.

Results: The model incorporating both cfDNA and volume parameters effectively separated responders (mean progression-free survival, 44.2 months) from non-responders [16.6 months, P=0.02; area under the receiver operating characteristic curve (AUC) =0.955], outperforming cfDNA only model (36.0 vs. 14.5 months, P=0.04; AUC =0.848). In contrast, RECIST v1.1-based conventional assessment showed no significant difference (P=0.62, AUC =0.70).

Conclusions: Therefore, our study demonstrates that integration of longitudinal cfDNA and tumor volume dynamics yielded improved assessment of treatment response and prognosis in NSCLC.

背景:肿瘤中基于游离DNA (cfDNA)的液体活检已经成为一种很有前途的跟踪癌症动态的技术,特别是在检测微小残留疾病方面。迄今为止,大多数研究都使用cfDNA对肿瘤负荷进行静态评估。在本研究中,我们提出了一种整合序列cfDNA和CT肿瘤体积的新方法,以充分反映治疗后肿瘤反应的动态性质。方法:这项前瞻性研究纳入了2019年6月至2020年11月期间接受治疗意图放疗的25例局限性非小细胞肺癌(NSCLC)患者,其中17例随后纳入最终分析。纵向血液样本相对于治疗开始后第3天分为两期,并计算动力学参数,如cfDNA水平的速度和加速度。为了补充后期的稀疏采样,纳入了常规CT扫描的体积数据。采用两种不同变量集(仅cfDNA和带体积参数的cfDNA)的K-means聚类和使用实体肿瘤应答评价标准(RECIST) v1.1的常规评估方法对患者进行分层,并比较其表现。结果:结合cfDNA和体积参数的模型有效地分离了应答者(平均无进展生存期,44.2个月)和无应答者[16.6个月,P=0.02;受试者工作特征曲线下面积(AUC) =0.955],优于单纯cfDNA模型(36.0 vs. 14.5个月,P=0.04; AUC =0.848)。与基于RECIST v1.1的常规评估相比,差异无统计学意义(P=0.62, AUC =0.70)。结论:因此,我们的研究表明,纵向cfDNA和肿瘤体积动力学的结合可以更好地评估非小细胞肺癌的治疗反应和预后。
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引用次数: 0
Efficacy and safety of immune checkpoint inhibitors in advanced non-small cell lung cancer with idiopathic interstitial pneumonia or interstitial lung abnormalities: NJLCG2301. 免疫检查点抑制剂治疗晚期非小细胞肺癌伴特发性间质性肺炎或间质性肺异常的疗效和安全性:NJLCG2301。
IF 3.5 2区 医学 Q2 ONCOLOGY Pub Date : 2025-11-30 Epub Date: 2025-11-26 DOI: 10.21037/tlcr-2025-783
Fumihiko Okumura, Hisashi Tanaka, Katsuhiro Onodera, Ryo Morita, Minehiko Inomata, Aya Suzuki, Jun Sugisaka, Hiroyuki Minemura, Daisuke Jingu, Satoshi Kudo, Hajime Kikuchi, Naruo Yoshimura, Fumiyasu Tsushima, Shingo Kakeda, Sadatomo Tasaka

Background: Immune checkpoint inhibitors (ICIs) have transformed the treatment landscape for advanced non-small cell lung cancer (NSCLC). However, their efficacy and safety in patients with idiopathic interstitial pneumonias (IIPs) or interstitial lung abnormalities (ILAs) remain poorly defined, as such patients have been largely excluded from pivotal clinical trials. This study aimed to assess real-world outcomes and adverse events associated with ICI-based therapies in patients with NSCLC and coexisting IIPs or ILAs.

Methods: We conducted a multicenter retrospective cohort study across 11 institutions affiliated with the North Japan Lung Cancer Study Group. Patients with advanced NSCLC and pre-existing IIPs or ILAs who received ICI monotherapy or ICI plus chemotherapy (chemo-ICI) between December 2015 and March 2020 were included. Data on progression-free survival (PFS), overall survival (OS), treatment response, and pneumonitis incidence were collected. High-resolution computed tomography (HRCT) images were centrally reviewed to classify the radiologic patterns of IIPs and ILAs.

Results: A total of 53 patients with IIPs and 18 with ILAs were analyzed. In the IIP cohort, the median PFS was 5.1 months with chemo-ICI, 7.3 months with first-line ICI monotherapy, and 5.7 months with second-line or later ICI monotherapy. The median OS ranged from 5.4 to 15.4 months, depending on the treatment type. Grade 3-4 pneumonitis occurred in 17.0% of patients with IIPs. In the ILA cohort, chemo-ICI resulted in a median OS of 27.0 months with no cases of pneumonitis, while ICI monotherapy was associated with a 22.2% pneumonitis incidence. Subpleural fibrotic ILAs were linked to a higher risk of pneumonitis. Long-term survivors were identified in both cohorts.

Conclusions: ICI therapy may provide durable survival benefits for patients with NSCLC and underlying IIPs or ILAs. However, the elevated incidence of high-grade pneumonitis-particularly in patients with IIPs or fibrotic ILAs-underscores the importance of careful patient selection. Prospective studies are needed to refine treatment strategies in this population.

背景:免疫检查点抑制剂(ICIs)已经改变了晚期非小细胞肺癌(NSCLC)的治疗前景。然而,它们在特发性间质性肺炎(IIPs)或间质性肺异常(ILAs)患者中的疗效和安全性仍然不明确,因为这类患者在很大程度上被排除在关键临床试验之外。本研究旨在评估非小细胞肺癌和共存iip或ILAs患者与基于ci的治疗相关的实际结果和不良事件。方法:我们在北日本肺癌研究组附属的11个机构进行了一项多中心回顾性队列研究。在2015年12月至2020年3月期间接受ICI单药治疗或ICI加化疗(化疗-ICI)的晚期非小细胞肺癌和先前存在的IIPs或ILAs患者纳入研究。收集无进展生存期(PFS)、总生存期(OS)、治疗反应和肺炎发病率的数据。集中回顾高分辨率计算机断层扫描(HRCT)图像,对iip和ILAs的放射学模式进行分类。结果:共分析IIPs患者53例,ILAs患者18例。在IIP队列中,化疗-ICI的中位PFS为5.1个月,一线ICI单药治疗为7.3个月,二线或更晚ICI单药治疗为5.7个月。根据治疗类型,中位OS从5.4到15.4个月不等。17.0%的iip患者发生3-4级肺炎。在ILA队列中,化疗-ICI导致的中位生存期为27.0个月,无肺炎病例,而ICI单药治疗与22.2%的肺炎发病率相关。胸膜下纤维化ILAs与肺炎的高风险相关。在两个队列中都确定了长期幸存者。结论:ICI治疗可能为非小细胞肺癌和潜在iip或ILAs患者提供持久的生存益处。然而,高级别肺炎的发病率升高,特别是在IIPs或纤维化ilas患者中,强调了谨慎选择患者的重要性。需要前瞻性研究来完善这一人群的治疗策略。
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引用次数: 0
Letetresgene autoleucel in advanced non-small cell lung cancer: a step towards truly personalized immunotherapy? 晚期非小细胞肺癌:迈向真正个性化免疫治疗的一步?
IF 3.5 2区 医学 Q2 ONCOLOGY Pub Date : 2025-11-30 Epub Date: 2025-11-21 DOI: 10.21037/tlcr-2025-866
M Alejandra Molina-Pérez, Sergio Martínez-Recio, Andrés Barba, Mikel Portu, Judit Sanz-Beltran, Margarita Majem
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引用次数: 0
Defining the surgical curative time window: identifying patients with an absence of recurrence for 5 years following surgical resection of stage I invasive non-small cell lung cancer. 确定手术治疗时间窗:确定I期侵袭性非小细胞肺癌手术切除后5年内无复发的患者。
IF 3.5 2区 医学 Q2 ONCOLOGY Pub Date : 2025-11-30 Epub Date: 2025-11-27 DOI: 10.21037/tlcr-2025-894
Tong Li, Yang Zhang, Hong Hu, Ting Ye, Yihua Sun, Yawei Zhang, Jiaqing Xiang, Haiquan Chen

Background: While most patients with stage I non-small cell lung cancer (NSCLC) remain recurrence-free after resection, some still develop recurrent disease. The surgical curative time window concept, defined as no recurrence through 5-year follow-up, helps identify potentially cured patients, yet predictive clinicopathologic features in stage I invasive NSCLC need clarification. This study sought to identify such features to enable risk-adapted surveillance.

Methods: We analyzed a prospectively collected dataset of patients with stage I invasive NSCLC who underwent R0 resection between 2008 and 2015. Cox regression analysis was used to evaluate the association between clinicopathologic features and disease recurrence, aiming to identify independent prognostic factors.

Results: A total of 1,817 patients met the inclusion criteria. The 5-year cumulative incidence of recurrence was 14.6%. Female sex, tumor size ≤2 cm, lepidic-predominant adenocarcinoma (LPA) histologic type, presence of a ground-glass opacity (GGO) component, and solid component size ≤10 mm were identified as independent prognostic factors. A risk stratification system was subsequently developed, classifying patients into two groups: a low-risk group (with ≥4 factors; n=341) and an elevated-risk group (with <4 factors; n=1,476). Kaplan-Meier analysis revealed statistically significant differences in recurrence-free survival (RFS), overall survival (OS), and lung cancer-specific survival (LCSS) between the two groups (P<0.001). The low-risk group is considered to represent the population within the surgical curative time window.

Conclusions: Patients with stage I invasive NSCLC who meet at least four of the following five criteria-female sex, tumor size ≤2 cm, solid component ≤10 mm, presence of a GGO component, and LPA histologic type-may be considered within the "surgical curative time window" and may therefore qualify for reduced surveillance intensity.

背景:虽然大多数I期非小细胞肺癌(NSCLC)患者在切除后仍无复发,但仍有一些患者复发。手术治疗时间窗概念,定义为5年随访无复发,有助于确定潜在治愈的患者,但I期侵袭性非小细胞肺癌的预测性临床病理特征需要澄清。本研究试图确定这些特征,使风险适应监测成为可能。方法:我们分析了2008年至2015年间接受R0切除术的I期侵袭性非小细胞肺癌患者的前瞻性数据集。采用Cox回归分析评价临床病理特征与疾病复发的关系,寻找独立的预后因素。结果:共有1817例患者符合纳入标准。5年累计复发率为14.6%。女性、肿瘤大小≤2 cm、鳞片显性腺癌(LPA)的组织学类型、有无磨玻璃样混浊(GGO)成分以及固体成分大小≤10 mm被认为是独立的预后因素。随后建立了风险分层系统,将患者分为两组:低风险组(≥4个因素;n=341)和高危组(结论:I期浸润性NSCLC患者满足以下5个标准中的至少4个:女性、肿瘤大小≤2cm、实体成分≤10mm、GGO成分的存在和LPA组织学类型,可能被认为在“手术治愈时间窗”内,因此可能有资格降低监测强度。
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引用次数: 0
Association of PD-L1 expression with systemic immune parameters in non-small cell lung cancer. 非小细胞肺癌中PD-L1表达与全身免疫参数的关系
IF 3.5 2区 医学 Q2 ONCOLOGY Pub Date : 2025-11-30 Epub Date: 2025-11-27 DOI: 10.21037/tlcr-2025-414
Mary E Gwin, Mitchell S von Itzstein, Jialiang Liu, Farjana J Fattah, Hong Mu-Mosley, Jeffrey A SoRelle, Sheena Bhalla, Jonathan E Dowell, Sawsan Rashdan, Jason Y Park, Donghan M Yang, Yang Xie, David E Gerber

Background: In non-small cell lung cancer (NSCLC), programmed death-ligand 1 (PD-L1) expression has moderate ability to predict immune checkpoint inhibitor (ICI) benefit. In clinical practice, PD-L1, a cell surface protein, cannot be characterized in currently available blood-based tests such as circulating tumor DNA assays. To understand the biologic effects of PD-L1 more fully and evaluate whether blood-based tests could provide insight into its expression, we determined the association between PD-L1 expression and systemic immune parameters.

Methods: We collected pre- and post-treatment (6-week) peripheral blood samples in patients with NSCLC treated with ICI. Using multiplex panels and cytometry by time of flight (CyTOF), we analyzed specimens for baseline and post-treatment changes in cytokines, autoantibodies, and immune cell populations. We determined the association between case characteristics, immune parameters, and tumor PD-L1 expression (categorized as <1%, 1-49%, and ≥50%) using Chi-square, one-way analysis of variance (ANOVA), and Kruskal-Wallis tests, accounting for multiple comparisons.

Results: A total of 119 patients were included in the analysis, of whom 41 (34%) had PD-L1 expression <1%; 44 (37%), 1-49%; and 34 (29%), ≥50%. PD-L1 expression was not associated with any demographic, tumor, or treatment characteristics. Among 39 cytokines evaluated, baseline levels of macrophage migration inhibitory factor (MIF) were significantly greater in high PD-L1 positive cases. Among 124 autoantibodies included in the analysis, three (anti-aggrecan, -proteoglycan, and -nucleosome) demonstrated significantly greater post-ICI treatment increases in cases with higher PD-L1 expression. In PD-L1 positive cases, baseline abundance of natural killer T (NKT) cells (P=0.001) and activated monocytes (P=0.04) were significantly lower, while post-treatment increases in mature natural killer (NK) cells were significantly greater (P=0.006).

Conclusions: NSCLC PD-L1 expression is associated with few systemic immune parameters, suggesting that effects on anti-tumor immunity may occur predominantly in the tumor microenvironment and that blood-based assays are unlikely to provide meaningful surrogates of this biomarker.

背景:在非小细胞肺癌(NSCLC)中,程序性死亡配体1 (PD-L1)表达具有中等预测免疫检查点抑制剂(ICI)疗效的能力。在临床实践中,PD-L1,一种细胞表面蛋白,不能在目前可用的血液检测中表征,如循环肿瘤DNA检测。为了更充分地了解PD-L1的生物学效应,并评估基于血液的测试是否可以深入了解其表达,我们确定了PD-L1表达与全身免疫参数之间的关系。方法:我们收集了接受ICI治疗的非小细胞肺癌患者治疗前后(6周)的外周血样本。使用多重面板和飞行时间细胞术(CyTOF),我们分析了标本的基线和治疗后细胞因子、自身抗体和免疫细胞群的变化。我们确定了病例特征、免疫参数和肿瘤PD-L1表达之间的关系(分类为:结果:总共119例患者被纳入分析,其中41例(34%)有PD-L1表达。非小细胞肺癌PD-L1表达与一些全身免疫参数相关,这表明抗肿瘤免疫的作用可能主要发生在肿瘤微环境中,基于血液的检测不太可能提供这种生物标志物的有意义的替代品。
{"title":"Association of PD-L1 expression with systemic immune parameters in non-small cell lung cancer.","authors":"Mary E Gwin, Mitchell S von Itzstein, Jialiang Liu, Farjana J Fattah, Hong Mu-Mosley, Jeffrey A SoRelle, Sheena Bhalla, Jonathan E Dowell, Sawsan Rashdan, Jason Y Park, Donghan M Yang, Yang Xie, David E Gerber","doi":"10.21037/tlcr-2025-414","DOIUrl":"10.21037/tlcr-2025-414","url":null,"abstract":"<p><strong>Background: </strong>In non-small cell lung cancer (NSCLC), programmed death-ligand 1 (PD-L1) expression has moderate ability to predict immune checkpoint inhibitor (ICI) benefit. In clinical practice, PD-L1, a cell surface protein, cannot be characterized in currently available blood-based tests such as circulating tumor DNA assays. To understand the biologic effects of PD-L1 more fully and evaluate whether blood-based tests could provide insight into its expression, we determined the association between PD-L1 expression and systemic immune parameters.</p><p><strong>Methods: </strong>We collected pre- and post-treatment (6-week) peripheral blood samples in patients with NSCLC treated with ICI. Using multiplex panels and cytometry by time of flight (CyTOF), we analyzed specimens for baseline and post-treatment changes in cytokines, autoantibodies, and immune cell populations. We determined the association between case characteristics, immune parameters, and tumor PD-L1 expression (categorized as <1%, 1-49%, and ≥50%) using Chi-square, one-way analysis of variance (ANOVA), and Kruskal-Wallis tests, accounting for multiple comparisons.</p><p><strong>Results: </strong>A total of 119 patients were included in the analysis, of whom 41 (34%) had PD-L1 expression <1%; 44 (37%), 1-49%; and 34 (29%), ≥50%. PD-L1 expression was not associated with any demographic, tumor, or treatment characteristics. Among 39 cytokines evaluated, baseline levels of macrophage migration inhibitory factor (MIF) were significantly greater in high PD-L1 positive cases. Among 124 autoantibodies included in the analysis, three (anti-aggrecan, -proteoglycan, and -nucleosome) demonstrated significantly greater post-ICI treatment increases in cases with higher PD-L1 expression. In PD-L1 positive cases, baseline abundance of natural killer T (NKT) cells (P=0.001) and activated monocytes (P=0.04) were significantly lower, while post-treatment increases in mature natural killer (NK) cells were significantly greater (P=0.006).</p><p><strong>Conclusions: </strong>NSCLC PD-L1 expression is associated with few systemic immune parameters, suggesting that effects on anti-tumor immunity may occur predominantly in the tumor microenvironment and that blood-based assays are unlikely to provide meaningful surrogates of this biomarker.</p>","PeriodicalId":23271,"journal":{"name":"Translational lung cancer research","volume":"14 11","pages":"4962-4972"},"PeriodicalIF":3.5,"publicationDate":"2025-11-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12683405/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145715878","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Whole genome characterization of patient-derived lung cancer organoids. 患者来源的肺癌类器官的全基因组特征。
IF 3.5 2区 医学 Q2 ONCOLOGY Pub Date : 2025-11-30 Epub Date: 2025-11-27 DOI: 10.21037/tlcr-2025-738
Hoi-Hin Kwok, Nerissa Chui-Mei Lee, Junyang Deng, Jiashuang Yang, Lynn Yim-Wah Shong, Cally Ka-Lai Ho, Kwok-Fai Lee, Michael Kuan-Yew Hsin, Hongjing Zang, Joshua Jing-Xi Li, David Chi-Leung Lam

Background: Lung cancer is a leading cause of cancer-related mortality worldwide, with heterogeneity and acquired resistance posing major challenges to treatment. Advances in next-generation sequencing (NGS) have enabled comprehensive genomic profiling, yet there remains a need for robust patient-derived models to study tumor biology and inform precision medicine. This study aims to establish and characterize patient-derived lung cancer organoids (LCOs) using whole-genome sequencing (WGS) to explore their genomic landscape and therapeutic potential.

Methods: We established a panel of LCOs from resected tumors and malignant pleural effusions (MPEs) of 14 non-small cell lung cancer (NSCLC) patients. Organoids were authenticated and subjected to WGS to profile somatic single nucleotide variants (SNVs), insertions/deletions (InDels), copy number variations (CNVs), structural variants (SVs), and microsatellite instability (MSI). Bioinformatic analyses were performed to annotate mutations, assess tumor mutation burden (TMB), and explore mutational signatures. Furthermore, deep learning-based drug response prediction and in vitro drug sensitivity assays were conducted to evaluate therapeutic potentials in the established LCOs.

Results: In the established LCOs, WGS revealed recurrent mutations in TP53, TTN, MUC16, and FLG, with approximately 80% of somatic variants located in non-coding regions, highlighting the potential role of regulatory elements in lung cancer pathogenesis. Early and locally advanced-stage tumor-derived LCOs exhibited higher TMB and MSI compared to those from advanced-stage disease, suggesting greater clonal diversity prior to therapeutic intervention. Drug screening demonstrated the feasibility of using genomic data for drug prediction, but requires more advanced models to fully utilize the WGS data.

Conclusions: Our comprehensive genomic characterization of patient-derived LCOs provides valuable insights into the mutational landscape and evolutionary dynamics of lung cancer. These well-annotated organoid models serve as a powerful resource for investigating tumor biology and developing genomically informed therapeutic strategies.

背景:肺癌是世界范围内癌症相关死亡的主要原因,异质性和获得性耐药给治疗带来了重大挑战。新一代测序技术(NGS)的进步使全面的基因组分析成为可能,但仍然需要强大的患者衍生模型来研究肿瘤生物学并为精准医学提供信息。本研究旨在利用全基因组测序(WGS)建立和表征患者源性肺癌类器官(LCOs),以探索其基因组图谱和治疗潜力。方法:我们从14例非小细胞肺癌(NSCLC)患者的切除肿瘤和恶性胸腔积液(MPEs)中建立LCOs组。对类器官进行鉴定并进行WGS,以分析体细胞单核苷酸变异(snv)、插入/缺失(InDels)、拷贝数变异(cnv)、结构变异(SVs)和微卫星不稳定性(MSI)。进行生物信息学分析来注释突变,评估肿瘤突变负担(TMB),并探索突变特征。此外,我们还进行了基于深度学习的药物反应预测和体外药敏试验,以评估所建立的LCOs的治疗潜力。结果:在已建立的LCOs中,WGS揭示了TP53、TTN、MUC16和FLG的复发突变,其中约80%的体细胞变异位于非编码区,突出了调控元件在肺癌发病中的潜在作用。与晚期疾病相比,早期和局部晚期肿瘤源性LCOs表现出更高的TMB和MSI,这表明在治疗干预之前存在更大的克隆多样性。药物筛选证明了利用基因组数据进行药物预测的可行性,但需要更先进的模型来充分利用WGS数据。结论:我们对患者源性LCOs的全面基因组特征分析为肺癌的突变景观和进化动力学提供了有价值的见解。这些注释良好的类器官模型为研究肿瘤生物学和开发基因组信息治疗策略提供了强大的资源。
{"title":"Whole genome characterization of patient-derived lung cancer organoids.","authors":"Hoi-Hin Kwok, Nerissa Chui-Mei Lee, Junyang Deng, Jiashuang Yang, Lynn Yim-Wah Shong, Cally Ka-Lai Ho, Kwok-Fai Lee, Michael Kuan-Yew Hsin, Hongjing Zang, Joshua Jing-Xi Li, David Chi-Leung Lam","doi":"10.21037/tlcr-2025-738","DOIUrl":"10.21037/tlcr-2025-738","url":null,"abstract":"<p><strong>Background: </strong>Lung cancer is a leading cause of cancer-related mortality worldwide, with heterogeneity and acquired resistance posing major challenges to treatment. Advances in next-generation sequencing (NGS) have enabled comprehensive genomic profiling, yet there remains a need for robust patient-derived models to study tumor biology and inform precision medicine. This study aims to establish and characterize patient-derived lung cancer organoids (LCOs) using whole-genome sequencing (WGS) to explore their genomic landscape and therapeutic potential.</p><p><strong>Methods: </strong>We established a panel of LCOs from resected tumors and malignant pleural effusions (MPEs) of 14 non-small cell lung cancer (NSCLC) patients. Organoids were authenticated and subjected to WGS to profile somatic single nucleotide variants (SNVs), insertions/deletions (InDels), copy number variations (CNVs), structural variants (SVs), and microsatellite instability (MSI). Bioinformatic analyses were performed to annotate mutations, assess tumor mutation burden (TMB), and explore mutational signatures. Furthermore, deep learning-based drug response prediction and in vitro drug sensitivity assays were conducted to evaluate therapeutic potentials in the established LCOs.</p><p><strong>Results: </strong>In the established LCOs, WGS revealed recurrent mutations in <i>TP53</i>, <i>TTN</i>, <i>MUC16</i>, and <i>FLG</i>, with approximately 80% of somatic variants located in non-coding regions, highlighting the potential role of regulatory elements in lung cancer pathogenesis. Early and locally advanced-stage tumor-derived LCOs exhibited higher TMB and MSI compared to those from advanced-stage disease, suggesting greater clonal diversity prior to therapeutic intervention. Drug screening demonstrated the feasibility of using genomic data for drug prediction, but requires more advanced models to fully utilize the WGS data.</p><p><strong>Conclusions: </strong>Our comprehensive genomic characterization of patient-derived LCOs provides valuable insights into the mutational landscape and evolutionary dynamics of lung cancer. These well-annotated organoid models serve as a powerful resource for investigating tumor biology and developing genomically informed therapeutic strategies.</p>","PeriodicalId":23271,"journal":{"name":"Translational lung cancer research","volume":"14 11","pages":"4906-4922"},"PeriodicalIF":3.5,"publicationDate":"2025-11-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12683417/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145715948","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Alectinib versus crizotinib as the first-line treatment in patients with advanced ALK-positive non-small cell lung cancer: a Chinese real-world cohort study. 阿勒替尼与克唑替尼作为晚期alk阳性非小细胞肺癌患者的一线治疗:中国现实世界队列研究
IF 3.5 2区 医学 Q2 ONCOLOGY Pub Date : 2025-11-30 Epub Date: 2025-11-27 DOI: 10.21037/tlcr-2025-1133
Haoran Zhang, Zhaozhen Wu, Tao Lu, Hui Zhang, Ji Li, Dongming Zhang, Siyuan Yu, Xiaobei Guo, Xiaoyi Feng, Jia Liu, Yuequan Shi, Xiaoxing Gao, Xiaoyan Liu, Minjiang Chen, Jing Zhao, Wei Zhong, Ying Hu, Yan Xu, Mengzhao Wang

Background: Clinical trials have demonstrated the efficacy of both alectinib and crizotinib in anaplastic lymphoma kinase (ALK) fusion (ALK-positive) non-small cell lung cancer (NSCLC). However, a critical question persists regarding their real-world comparative effectiveness in Chinese patients, especially in light of divergent overall survival (OS) results from Western and Asian trials. To address this uncertainty, this real-world study aimed to directly compare the efficacy of alectinib and crizotinib as first-line therapies in a Chinese clinical setting.

Methods: Patients diagnosed with ALK-positive NSCLC from two centers in China were included in the study. Progression-free survival (PFS) was the primary endpoint, while OS, the disease control rate, the objective response rate, and safety were the secondary endpoints. Second-line therapy and prognostic factors were also investigated.

Results: In total, 261 treatment-naïve patients were evaluated, of whom, 128 received crizotinib, and 133 received alectinib. Compared with crizotinib, alectinib demonstrated significant superiority in terms of PFS [45.5 vs. 16.6 months, hazard ratio (HR) =0.36, P<0.001]. However, the PFS of the patients who received first-line alectinib therapy was comparable to that of the patients who received both first-line crizotinib therapy and second-line therapy (45.5 vs. 43.9 months, P=0.32). Similarly, the OS was comparable between the alectinib and crizotinib treatment groups (alectinib vs. crizotinib, not reached vs. 71.2 months, P=0.23). The alectinib treatment group also had a lower incidence of adverse events (AEs) than the crizotinib treatment group (34.6% vs. 50.0%, P=0.01). The occurrence rates of grade 3 or higher AEs were comparable between the two groups (alectinib vs. crizotinib, 4.5% vs. 5.5%). Further, receiving crizotinib instead of alectinib as the first-line therapy and the presence of bone and adrenal metastases at the baseline were independent risk factors for PFS. While the presence of bone, liver, and adrenal metastasis were independent risk factors for OS.

Conclusions: Alectinib is recommended over crizotinib in the treatment of patients with ALK-positive NSCLC.

背景:临床试验已经证明了阿勒替尼和克唑替尼治疗间变性淋巴瘤激酶(ALK)融合(ALK阳性)非小细胞肺癌(NSCLC)的疗效。然而,一个关键的问题仍然存在,即它们在中国患者中的实际比较有效性,特别是考虑到西方和亚洲试验的总生存期(OS)结果不同。为了解决这一不确定性,这项现实世界的研究旨在直接比较阿勒替尼和克唑替尼作为一线治疗在中国临床环境中的疗效。方法:将中国两个中心诊断为alk阳性NSCLC的患者纳入研究。无进展生存期(PFS)是主要终点,而OS、疾病控制率、客观缓解率和安全性是次要终点。二线治疗和预后因素也进行了调查。结果:共评估261例treatment-naïve患者,其中128例接受克唑替尼治疗,133例接受阿勒替尼治疗。与克唑替尼相比,阿勒替尼在PFS方面表现出显著优势[45.5 vs. 16.6个月,风险比(HR) =0.36, PFS = 43.9个月,P=0.32]。同样,阿勒替尼治疗组和克唑替尼治疗组之间的OS具有可比性(阿勒替尼vs克唑替尼,未达到vs 71.2个月,P=0.23)。阿勒替尼治疗组不良事件发生率(ae)也低于克唑替尼治疗组(34.6%比50.0%,P=0.01)。两组间3级及以上ae的发生率具有可比性(阿勒替尼vs克唑替尼,4.5% vs 5.5%)。此外,接受克唑替尼而不是阿勒替尼作为一线治疗以及基线时骨和肾上腺转移的存在是PFS的独立危险因素。而骨、肝和肾上腺转移的存在是OS的独立危险因素。结论:alk阳性NSCLC患者推荐使用Alectinib而不是crizotinib。
{"title":"Alectinib versus crizotinib as the first-line treatment in patients with advanced ALK-positive non-small cell lung cancer: a Chinese real-world cohort study.","authors":"Haoran Zhang, Zhaozhen Wu, Tao Lu, Hui Zhang, Ji Li, Dongming Zhang, Siyuan Yu, Xiaobei Guo, Xiaoyi Feng, Jia Liu, Yuequan Shi, Xiaoxing Gao, Xiaoyan Liu, Minjiang Chen, Jing Zhao, Wei Zhong, Ying Hu, Yan Xu, Mengzhao Wang","doi":"10.21037/tlcr-2025-1133","DOIUrl":"10.21037/tlcr-2025-1133","url":null,"abstract":"<p><strong>Background: </strong>Clinical trials have demonstrated the efficacy of both alectinib and crizotinib in anaplastic lymphoma kinase (ALK) fusion (ALK-positive) non-small cell lung cancer (NSCLC). However, a critical question persists regarding their real-world comparative effectiveness in Chinese patients, especially in light of divergent overall survival (OS) results from Western and Asian trials. To address this uncertainty, this real-world study aimed to directly compare the efficacy of alectinib and crizotinib as first-line therapies in a Chinese clinical setting.</p><p><strong>Methods: </strong>Patients diagnosed with ALK-positive NSCLC from two centers in China were included in the study. Progression-free survival (PFS) was the primary endpoint, while OS, the disease control rate, the objective response rate, and safety were the secondary endpoints. Second-line therapy and prognostic factors were also investigated.</p><p><strong>Results: </strong>In total, 261 treatment-naïve patients were evaluated, of whom, 128 received crizotinib, and 133 received alectinib. Compared with crizotinib, alectinib demonstrated significant superiority in terms of PFS [45.5 <i>vs.</i> 16.6 months, hazard ratio (HR) =0.36, P<0.001]. However, the PFS of the patients who received first-line alectinib therapy was comparable to that of the patients who received both first-line crizotinib therapy and second-line therapy (45.5 <i>vs.</i> 43.9 months, P=0.32). Similarly, the OS was comparable between the alectinib and crizotinib treatment groups (alectinib <i>vs.</i> crizotinib, not reached <i>vs.</i> 71.2 months, P=0.23). The alectinib treatment group also had a lower incidence of adverse events (AEs) than the crizotinib treatment group (34.6% <i>vs.</i> 50.0%, P=0.01). The occurrence rates of grade 3 or higher AEs were comparable between the two groups (alectinib <i>vs.</i> crizotinib, 4.5% <i>vs.</i> 5.5%). Further, receiving crizotinib instead of alectinib as the first-line therapy and the presence of bone and adrenal metastases at the baseline were independent risk factors for PFS. While the presence of bone, liver, and adrenal metastasis were independent risk factors for OS.</p><p><strong>Conclusions: </strong>Alectinib is recommended over crizotinib in the treatment of patients with ALK-positive NSCLC.</p>","PeriodicalId":23271,"journal":{"name":"Translational lung cancer research","volume":"14 11","pages":"5044-5058"},"PeriodicalIF":3.5,"publicationDate":"2025-11-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12683480/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145715790","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A new hope for aggressive thoracic cancers: foundational efficacy of frontline immunotherapy in SMARCA4-deficient tumors. 侵袭性胸部肿瘤的新希望:一线免疫治疗smarca4缺陷肿瘤的基础疗效
IF 3.5 2区 医学 Q2 ONCOLOGY Pub Date : 2025-11-30 Epub Date: 2025-11-26 DOI: 10.21037/tlcr-2025-1075
Qiang Wu, Li Wang, Hao Su, Ting Lei
{"title":"A new hope for aggressive thoracic cancers: foundational efficacy of frontline immunotherapy in SMARCA4-deficient tumors.","authors":"Qiang Wu, Li Wang, Hao Su, Ting Lei","doi":"10.21037/tlcr-2025-1075","DOIUrl":"10.21037/tlcr-2025-1075","url":null,"abstract":"","PeriodicalId":23271,"journal":{"name":"Translational lung cancer research","volume":"14 11","pages":"5198-5199"},"PeriodicalIF":3.5,"publicationDate":"2025-11-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12683402/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145715807","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Retrospective evaluation of anti-angiogenic and immune checkpoint inhibitor combination therapy in SMARCA4-deficient thoracic tumors: efficacy, safety, and biomarker considerations. 抗血管生成和免疫检查点抑制剂联合治疗smarca4缺陷胸椎肿瘤的回顾性评价:疗效、安全性和生物标志物考虑
IF 3.5 2区 医学 Q2 ONCOLOGY Pub Date : 2025-11-30 Epub Date: 2025-11-22 DOI: 10.21037/tlcr-2025-aw-1136
Beibei Liu, Danni Wang, Yujing Li, Fangfei Qian, Yanwei Zhang, Lele Zhang, Xinwei Wu, Xuemei Liu, Wenyan Ma, Wei Zhang, Lvkan Weng, Yuqing Lou, Rong Li
{"title":"Retrospective evaluation of anti-angiogenic and immune checkpoint inhibitor combination therapy in SMARCA4-deficient thoracic tumors: efficacy, safety, and biomarker considerations.","authors":"Beibei Liu, Danni Wang, Yujing Li, Fangfei Qian, Yanwei Zhang, Lele Zhang, Xinwei Wu, Xuemei Liu, Wenyan Ma, Wei Zhang, Lvkan Weng, Yuqing Lou, Rong Li","doi":"10.21037/tlcr-2025-aw-1136","DOIUrl":"10.21037/tlcr-2025-aw-1136","url":null,"abstract":"","PeriodicalId":23271,"journal":{"name":"Translational lung cancer research","volume":"14 11","pages":"5200-5202"},"PeriodicalIF":3.5,"publicationDate":"2025-11-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12683455/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145715865","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Selecting optimal immunotherapy based on inflammation in stage IV PD-L1 ≥50% gene mutation-negative non-small cell lung cancer: pembrolizumab monotherapy versus combination chemoimmunotherapy. 基于IV期PD-L1≥50%基因突变阴性非小细胞肺癌炎症选择最佳免疫治疗:派姆单抗单药与联合化疗免疫治疗
IF 3.5 2区 医学 Q2 ONCOLOGY Pub Date : 2025-11-30 Epub Date: 2025-11-27 DOI: 10.21037/tlcr-2025-873
Yusuke Kunimatsu, Naoya Nishioka, Tadaaki Yamada, Hayato Kawachi, Motohiro Tamiya, Yoshiki Negi, Yasuhiro Goto, Akira Nakao, Shinsuke Shiotsu, Keiko Tanimura, Takayuki Takeda, Asuka Okada, Taishi Harada, Koji Date, Yusuke Chihara, Isao Hasegawa, Nobuyo Tamiya, Masaki Ishida, Takashi Kijima, Koichi Takayama

Background: Systemic inflammation may reduce the efficacy of immunotherapy. For advanced non-small cell lung cancer (NSCLC) with programmed death-ligand 1 (PD-L1) expression ≥50% and without driver gene mutations, both immunotherapy monotherapy and combination chemoimmunotherapy are considered standard treatment options; however, it remains unclear which treatment is more appropriate depending on the degree of inflammation. This study investigated the impact of inflammation on the effectiveness of pembrolizumab monotherapy versus combination chemoimmunotherapy.

Methods: In this retrospective multicenter cohort study, we included patients with advanced NSCLC from 13 Japanese institutions who received pembrolizumab monotherapy or combination chemoimmunotherapy as first-line treatment between March 2017 and October 2021. The systemic immune-inflammation index (SII) was used as an inflammation marker, with a cutoff value of 1,444 based on previous data. Patients were classified into high (SII ≥1,444) and low (SII <1,444) inflammation groups.

Results: This study included 347 patients with advanced NSCLC: 212 (61.1%) in the pembrolizumab group and 135 (38.9%) in the combination chemoimmunotherapy group. In the high inflammation population, there were no significant differences in progression-free survival (PFS) and overall survival (OS) between the pembrolizumab and combination chemoimmunotherapy groups. In the low inflammation population, PFS and OS were significantly improved in the combination chemoimmunotherapy group compared to the pembrolizumab group [median PFS: 8.8 vs. 16.0 months, hazard ratio (HR) =0.69, P=0.04; median OS: 29.4 vs. not reached (NR), HR =0.55, P=0.007].

Conclusions: In patients with advanced, driver gene mutation-negative NSCLC, high PD-L1 expression (≥50%), and low systemic inflammation, combination chemoimmunotherapy significantly improved PFS and OS compared to pembrolizumab monotherapy.

背景:全身性炎症可降低免疫治疗的疗效。对于程序性死亡配体1 (PD-L1)表达≥50%且无驱动基因突变的晚期非小细胞肺癌(NSCLC),免疫治疗单一治疗和联合化疗免疫治疗被认为是标准治疗选择;然而,目前尚不清楚根据炎症程度哪种治疗更合适。本研究调查了炎症对派姆单抗单药治疗与联合化疗免疫治疗有效性的影响。方法:在这项回顾性多中心队列研究中,我们纳入了来自13家日本机构的晚期NSCLC患者,这些患者在2017年3月至2021年10月期间接受了派姆单抗单药治疗或联合化疗免疫治疗作为一线治疗。采用全身免疫炎症指数(SII)作为炎症标志物,根据既往数据,临界值为1444。结果:本研究纳入347例晚期NSCLC患者:派姆单抗组212例(61.1%),化疗免疫联合治疗组135例(38.9%)。在高炎症人群中,派姆单抗组和联合化疗免疫治疗组在无进展生存期(PFS)和总生存期(OS)方面没有显著差异。在低炎症人群中,与派姆单抗组相比,化疗免疫联合治疗组的PFS和OS均显著改善[中位PFS: 8.8个月vs. 16.0个月,风险比(HR) =0.69, P=0.04;中位OS: 29.4 vs.未达到(NR), HR =0.55, P=0.007]。结论:在晚期、驱动基因突变阴性、PD-L1高表达(≥50%)、低全身炎症的NSCLC患者中,与派姆单抗单药治疗相比,联合化疗免疫治疗可显著改善PFS和OS。
{"title":"Selecting optimal immunotherapy based on inflammation in stage IV PD-L1 ≥50% gene mutation-negative non-small cell lung cancer: pembrolizumab monotherapy versus combination chemoimmunotherapy.","authors":"Yusuke Kunimatsu, Naoya Nishioka, Tadaaki Yamada, Hayato Kawachi, Motohiro Tamiya, Yoshiki Negi, Yasuhiro Goto, Akira Nakao, Shinsuke Shiotsu, Keiko Tanimura, Takayuki Takeda, Asuka Okada, Taishi Harada, Koji Date, Yusuke Chihara, Isao Hasegawa, Nobuyo Tamiya, Masaki Ishida, Takashi Kijima, Koichi Takayama","doi":"10.21037/tlcr-2025-873","DOIUrl":"10.21037/tlcr-2025-873","url":null,"abstract":"<p><strong>Background: </strong>Systemic inflammation may reduce the efficacy of immunotherapy. For advanced non-small cell lung cancer (NSCLC) with programmed death-ligand 1 (PD-L1) expression ≥50% and without driver gene mutations, both immunotherapy monotherapy and combination chemoimmunotherapy are considered standard treatment options; however, it remains unclear which treatment is more appropriate depending on the degree of inflammation. This study investigated the impact of inflammation on the effectiveness of pembrolizumab monotherapy versus combination chemoimmunotherapy.</p><p><strong>Methods: </strong>In this retrospective multicenter cohort study, we included patients with advanced NSCLC from 13 Japanese institutions who received pembrolizumab monotherapy or combination chemoimmunotherapy as first-line treatment between March 2017 and October 2021. The systemic immune-inflammation index (SII) was used as an inflammation marker, with a cutoff value of 1,444 based on previous data. Patients were classified into high (SII ≥1,444) and low (SII <1,444) inflammation groups.</p><p><strong>Results: </strong>This study included 347 patients with advanced NSCLC: 212 (61.1%) in the pembrolizumab group and 135 (38.9%) in the combination chemoimmunotherapy group. In the high inflammation population, there were no significant differences in progression-free survival (PFS) and overall survival (OS) between the pembrolizumab and combination chemoimmunotherapy groups. In the low inflammation population, PFS and OS were significantly improved in the combination chemoimmunotherapy group compared to the pembrolizumab group [median PFS: 8.8 <i>vs.</i> 16.0 months, hazard ratio (HR) =0.69, P=0.04; median OS: 29.4 <i>vs.</i> not reached (NR), HR =0.55, P=0.007].</p><p><strong>Conclusions: </strong>In patients with advanced, driver gene mutation-negative NSCLC, high PD-L1 expression (≥50%), and low systemic inflammation, combination chemoimmunotherapy significantly improved PFS and OS compared to pembrolizumab monotherapy.</p>","PeriodicalId":23271,"journal":{"name":"Translational lung cancer research","volume":"14 11","pages":"4733-4745"},"PeriodicalIF":3.5,"publicationDate":"2025-11-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12683408/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145715819","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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Translational lung cancer research
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