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Validation of "sasLM," an R package for linear models with type III sum of squares. 验证“sasLM”,一个R包线性模型与类型III平方和。
IF 0.9 Q3 Medicine Pub Date : 2020-06-01 Epub Date: 2020-06-24 DOI: 10.12793/tcp.2020.28.e9
Jung Sunwoo, Hyungsub Kim, Dohyun Choi, Kyun-Seop Bae

The general linear model (GLM) describes the dependent variable as a linear combination of independent variables and an error term. The GLM procedure of SAS® and the "car" package in R calculate the type I, II, or III ANOVA (analysis of variance) tables. In this study, we validated the newly-developed R package, "sasLM," which is compatible with the GLM procedure of SAS®. The "sasLM" package was validated by comparing the output with SAS®, which is the current gold standard for statistical programming. Data from ten books and articles were used for validation. The results of the "sasLM" and "car" packages were compared with those in SAS® using 194 models. All of the results in "sasLM" were identical to those of SAS®, whereas more than 20 models in "car" showed different results from those of SAS®. As the results of the "sasLM" package were similar to those in SAS® PROC GLM, the "sasLM" package could be a viable alternative method for calculating the type II and III sum of squares. The newly-developed "sasLM" package is free and open-source, therefore it can be used to develop other useful packages as well. We hope that the "sasLM" package will enable researchers to conveniently analyze linear models.

一般线性模型(GLM)将因变量描述为自变量和误差项的线性组合。SAS®的GLM程序和R中的“car”包计算I型、II型或III型方差分析表。在本研究中,我们验证了新开发的R包“sasLM”,它与SAS®的GLM程序兼容。通过将输出与SAS®(统计编程的当前黄金标准)进行比较,验证了“sasLM”包。数据来自10本书籍和文章进行验证。使用194个模型,将“sasLM”和“car”包的结果与SAS®中的结果进行比较。“sasLM”中所有的结果都与SAS®相同,而“car”中有20多个模型的结果与SAS®不同。由于“sasLM”包的结果与SAS®PROC GLM中的结果相似,因此“sasLM”包可能是计算II型和III型平方和的可行替代方法。新开发的“sasLM”包是免费和开源的,因此它也可以用于开发其他有用的包。我们希望“sasLM”包将使研究人员能够方便地分析线性模型。
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引用次数: 1
Common data model-based real-world data for practical clinical practice guidelines: clinical pharmacology perspectives. 临床实践指南中基于真实世界数据的通用数据模型:临床药理学观点。
IF 0.9 Q3 Medicine Pub Date : 2020-06-01 Epub Date: 2020-06-25 DOI: 10.12793/tcp.2020.28.e11
Yoomin Jeon, Yoona Choi, Esther Hehsun Kim, SeonYeong Oh, Howard Lee
Clinical practice guidelines (CPGs) are a set of statements systematically developed to assist healthcare professionals and decision makers to practice evidence-based medicine by promoting cost-effective interventions while discouraging ineffective, wasteful, or potentially harmful treatments [1]. CPGs can improve the consistency and quality of care by providing the gold standard, which also helps reduce variation in clinical practice [1]. To ensure the validity of CPGs, clinically important recommendations in CPGs need to be updated periodically as scientific evidence constantly expands and evolves [1].
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引用次数: 3
Pharmacokinetics and bioequivalence of fixed-dose combination of candesartan cilexetil/amlodipine besylate (16/10 mg) versus coadministration of individual formulations in healthy subjects. 坎地沙坦西莱西酯/苯磺酸氨氯地平(16/ 10mg)固定剂量联合用药与健康受试者单独用药的药代动力学和生物等效性
IF 0.9 Q3 Medicine Pub Date : 2020-06-01 Epub Date: 2020-06-24 DOI: 10.12793/tcp.2020.28.e8
Hae Won Lee, Woo Youl Kang, Wookjae Jung, Mi-Ri Gwon, Dong Heon Yang, Eun Hee Kim, Kyunghee Cho, Young-Ran Yoon, Sook Jin Seong

This study compared the pharmacokinetics of a fixed-dose combination (FDC) of candesartan (16 mg) and amlodipine (10 mg) versus coadministration of individual formulations to clarify the bioequivalence of the FDC. In this randomized, open-label, single-dose, 2-treatment, 2-way crossover study, healthy Korean volunteers received a single dose of candesartan (16 mg) with amlodipine (10 mg) as either an FDC or single agents concomitantly administered, with a 2-week washout period. Serial blood samples were collected up to 72 hours after dosing for each treatment period, and plasma concentrations of candesartan and amlodipine were measured using a validated liquid chromatography-tandem mass spectrometry method. A total of 39 subjects completed the study. The geometric mean ratios (GMRs) and 90% confidence intervals (CIs) for the area under the plasma concentration-time curve from time 0 to the last measurement (AUC0-t) and the peak plasma concentration (Cmax) for candesartan were 1.0182 (0.9562-1.0841) and 0.9492 (0.8726-1.0324), respectively. The GMR and 90% CI for the AUC0-t and Cmax for amlodipine were 1.0552 (1.0255-1.0857) and 1.0668 (1.0259-1.1094), respectively. In conclusion, the new FDC formulation of candesartan (16 mg) and amlodipine (10 mg) was bioequivalent to the concomitant administration of single agents. A single dose of candesartan/amlodipine as the FDC or as single agents was well tolerated.

Trial registration: ClinicalTrials.gov Identifier: NCT02988362.

本研究比较了坎地沙坦(16毫克)和氨氯地平(10毫克)的固定剂量组合(FDC)与单独联合用药的药代动力学,以阐明FDC的生物等效性。在这项随机、开放标签、单剂量、双治疗、双向交叉研究中,健康的韩国志愿者接受单剂量坎地沙坦(16 mg)和氨氯地平(10 mg)作为FDC或单药同时施用,洗脱期为2周。每个治疗期给药后72小时内收集连续血液样本,并使用有效的液相色谱-串联质谱法测量坎地沙坦和氨氯地平的血浆浓度。共有39名受试者完成了研究。坎地沙坦血药浓度-时间曲线下面积(AUC0-t)的几何平均比(GMRs)和90%置信区间(CIs)分别为1.0182(0.9562-1.0841)和0.9492(0.8726-1.0324)。氨氯地平AUC0-t的GMR和90% CI分别为1.0552(1.0255 ~ 1.0857)和1.0668(1.0259 ~ 1.1094)。总之,新的FDC制剂坎地沙坦(16 mg)和氨氯地平(10 mg)与单药同时给药具有生物等效性。单剂量坎地沙坦/氨氯地平作为FDC或单药耐受性良好。试验注册:ClinicalTrials.gov标识符:NCT02988362。
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引用次数: 0
Survey of physicians' views on the clinical implementation of pharmacogenomics-based personalized therapy. 医生对基于药物基因组学的个体化治疗临床实施的看法调查。
IF 0.9 Q3 Medicine Pub Date : 2020-03-01 Epub Date: 2020-03-31 DOI: 10.12793/tcp.2020.28.e6
Woo-Young Kim, Ho-Sook Kim, Minkyung Oh, Jae-Gook Shin

Despite quantitative increases and qualitative advances in pharmacogenomics (PGx) research, the clinical implementation of PGx-based personalized therapy has still been limited. The objective of this study was to assess physicians' self-reported knowledge of PGx-based personalized therapy, and to explore the most problematic and highest priority barriers preventing physicians from applying PGx into clinical practice under the Korean healthcare system. A 36-question survey was distributed to 53 physicians with various specialties in Korea. In the physicians' self-perceived knowledge, twenty-eight physicians (53%) reported a lack sufficient knowledge about PGx. The perceived largest barrier to clinical implementation of PGx was the high cost of PGx testing, followed by a lack of PGx education for healthcare providers or lack of clinical PGx experts. Physicians without clinical PGx experience or with indirect experience reported that the largest barrier to clinical implementation of PGx was the high cost of PGx testing, while physicians with clinical PGx experience pointed out that a lack of patients' education was the major concern, followed by a lack of PGx education for healthcare providers or lack of clinical PGx experts. The highest priority problem was reported to be a lack of actionable guidelines for drug selection and dosing using PGx. In conclusion, we should increase and expand extensive educational programs for healthcare providers and patients, and to develop and establish a clinical decision support systems for PGx-based personalized therapy in Korea.

尽管药物基因组学(PGx)研究的数量增加和质量进步,但基于PGx的个性化治疗的临床实施仍然有限。本研究的目的是评估医生对基于PGx的个性化治疗的自我报告知识,并探讨在韩国医疗保健系统下阻碍医生将PGx应用于临床实践的最成问题和最优先的障碍。以全国53名专科医生为对象,进行了36个问题的问卷调查。在医生的自我认知知识中,28名医生(53%)表示缺乏足够的PGx知识。临床实施PGx的最大障碍是PGx检测的高成本,其次是医疗保健提供者缺乏PGx教育或缺乏临床PGx专家。没有临床PGx经验或有间接经验的医生报告说,临床实施PGx的最大障碍是PGx检测的高成本,而有临床PGx经验的医生指出,缺乏患者教育是主要问题,其次是医疗保健提供者缺乏PGx教育或缺乏临床PGx专家。据报道,最优先的问题是缺乏使用PGx进行药物选择和给药的可操作指南。总之,我们应该增加和扩大对医疗保健提供者和患者的广泛教育计划,并在韩国开发和建立基于pgx的个性化治疗的临床决策支持系统。
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引用次数: 17
What is the optimal fit-for-purpose design in an oncology first-in-human trial?: 3+3 vs. Bayesian logistic regression model. 在肿瘤首次人体试验中,什么是最适合目的的设计?: 3+3 vs.贝叶斯logistic回归模型。
IF 0.9 Q3 Medicine Pub Date : 2020-03-01 Epub Date: 2020-03-26 DOI: 10.12793/tcp.2020.28.e1
Sun Young Yum
Primary goals When designing a clinical trial, the goals must be clearly and specifically defined, and this should guide decision making on the details of the study. The goals of phase 1 oncology studies may include: 1) determine maximal tolerated dose (MTD), 2) provide recommended phase 2 dose (RP2D), 3) describe/characterize dose-limiting toxicity (DLT), 4) expand understanding of the investigational product, e.g. pharmacokinetics, efficacy. These goals may be coupled with business/development timeline (e.g., as quickly as possible) and/or cost goals (with fewest possible subjects). For novel targets or mode of action, these many goals are further complicated by limited information about clinical efficacy and toxicity. The ethical dilemma regarding dose selection has evolved from being centered on limiting the number of patients who experience toxicity to also minimize underdosing of patients in need of treatment.
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引用次数: 1
Complex influences of gut microbiome metabolism on various drug responses. 肠道微生物组代谢对各种药物反应的复杂影响。
IF 0.9 Q3 Medicine Pub Date : 2020-03-01 Epub Date: 2020-03-30 DOI: 10.12793/tcp.2020.28.e3
Sihyun Chae, Da Jung Kim, Joo-Youn Cho

The gut microbiome closely interacts with the host, and it has a major influence on drug response. Many studies have reported the possible microbial influences on drugs and the possible influences of drugs on the microbiome. This knowledge has led to a better understanding of intra- and inter-individual variabilities in clinical pharmacology. For a more precise understanding of the complex correlation between the microbiome and drugs, in this review, we summarized the current knowledge on the interactions between the gut microbiome and drug response. Moreover, we suggest gut microbiome-derived metabolites as possible modulators of drug response and recommend metabolomics as a powerful tool to achieve such understanding.

肠道微生物组与宿主密切相关,对药物反应有重大影响。许多研究报告了微生物对药物可能产生的影响以及药物对微生物组可能产生的影响。这些知识使人们对临床药理学中个体内和个体间的差异有了更好的了解。为了更准确地理解微生物组与药物之间复杂的相关性,我们在这篇综述中总结了目前关于肠道微生物组与药物反应之间相互作用的知识。此外,我们建议将肠道微生物衍生的代谢物作为药物反应的可能调节剂,并推荐代谢组学作为实现这种理解的有力工具。
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引用次数: 0
Pharmacokinetics and pharmacodynamics of a fixed-dose combination of gemigliptin/metformin sustained release 25/500 mg compared to the loose combination in healthy male subjects. 格列汀/二甲双胍缓释25/500 mg固定剂量组合与松散组合在健康男性受试者中的药代动力学和药效学比较
IF 0.9 Q3 Medicine Pub Date : 2020-03-01 Epub Date: 2020-03-30 DOI: 10.12793/tcp.2020.28.e2
Xuanyou Jin, Eunwoo Kim, Ki Young Huh, Inyoung Hwang, Joo-Youn Cho, Kyung-Sang Yu, SeungHwan Lee

A fixed-dose combination (FDC) of gemigliptin/metformin can improve the medication adherence in patients with type 2 diabetes mellitus (T2DM). In this study, the pharmacokinetic (PK) and pharmacodynamic (PD) profiles of gemigliptin and metformin were compared between FDC and the corresponding loose combination under fasted and fed states. A two-part, randomized, open label, single-dose, two-way crossover study was conducted in healthy male subjects. Under fasted (part 1) or fed (part 2) state, 2 FDC tablets of gemigliptin/metformin sustained release (SR) 25/500 mg or loose combination with one tablet of gemigliptin 50 mg and two tablets of metformin extended release (XR) 500 mg were orally administered in each period with a 7-day washout. Serial blood samples were collected up to 48 hours to determine the drug concentration and the dipeptidyl peptidase 4 (DPP-4) activity. The concentration-time profiles of gemigliptin and metformin were similar between FDC and loose combination in both the fasted and fed states. Geometric mean ratios and 90% confidence intervals of FDC to loose combination for area under the concentration-time curve and maximum plasma concentration of gemigliptin and metformin were within the bioequivalence range (0.8-1.25) in both states. DPP-4 activity-time profiles of FDC were comparable to that of the loose combination, showing similar area under the DPP-4 inhibition-time curve and maximum DPP-4 inhibition between FDC and loose combination, regardless of the fasted or fed state. In conclusion, the PK/PD characteristics of gemigliptin and metformin were similar in FDC tablets and loose combination both in fasted and fed states.

Trial registration: ClinicalTrials.gov Identifier: NCT03355014.

吉格列汀/二甲双胍固定剂量联合用药可改善2型糖尿病(T2DM)患者的药物依从性。本研究比较了空腹和空腹状态下,格格列汀和二甲双胍的药代动力学(PK)和药效学(PD)特征。在健康男性受试者中进行了一项两部分、随机、开放标签、单剂量、双向交叉研究。在禁食(第1部分)或进食(第2部分)状态下,每个周期口服2片FDC片gemigliptin/metformin缓释(SR) 25/500 mg或松散联合1片gemigliptin 50 mg和2片二甲双胍缓释(XR) 500 mg,并进行7天的洗脱。连续采集48小时血液样本,测定药物浓度和二肽基肽酶4 (DPP-4)活性。在空腹和进食状态下,格列汀和二甲双胍的浓度-时间分布在FDC和松散组合之间相似。两种状态下,格格列汀和二甲双胍的浓度-时间曲线下面积和最大血浆浓度的FDC与松散组合的几何平均比和90%置信区间均在生物等效性范围内(0.8-1.25)。FDC的DPP-4活性-时间曲线与松散组合的DPP-4活性-时间曲线相当,在DPP-4抑制时间曲线下的面积相似,FDC与松散组合的DPP-4抑制最大,无论禁食还是进食状态。综上所述,在空腹和进食状态下,格格列汀与二甲双胍在FDC片剂和松散组合下的PK/PD特征相似。试验注册:ClinicalTrials.gov标识符:NCT03355014。
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引用次数: 3
Possibility of pharmacokinetic drug interaction between a DPP-4 inhibitor and a SGLT2 inhibitor. DPP-4抑制剂和SGLT2抑制剂之间药代动力学相互作用的可能性。
IF 0.9 Q3 Medicine Pub Date : 2020-03-01 Epub Date: 2020-03-31 DOI: 10.12793/tcp.2020.28.e4
Namyi Gu, Sang-In Park, Hyewon Chung, Xuanyou Jin, SeungHwan Lee, Tae-Eun Kim

Type 2 diabetes mellitus is a multifactorial condition characterized by high level of sugar in the blood. To control hyperglycemia, combination therapy is recommended if monotherapy fails to achieve glycemic control. The combination of a dipeptidyl peptidase-4 (DPP-4) inhibitor and a sodium-glucose cotransporter type 2 (SGLT2) inhibitor is a promising option of the combination therapies in terms of safety as well as efficacy. Despite of the value of combination therapy of these two agents, the pharmacokinetic drug interactions between these two classes of agents have been evaluated in a few drugs. Thus, we reviewed the potential pharmacokinetic drug interaction based on the in vitro metabolism- and transporter-mediated drug interaction information as well as drug interaction studies in human, between a DPP-4 inhibitor and a SGLT2 inhibitor which are marketed in South Korea.

2型糖尿病是一种以高血糖为特征的多因素疾病。为了控制高血糖,如果单药治疗不能达到控制血糖的目的,建议联合治疗。二肽基肽酶-4 (DPP-4)抑制剂和钠-葡萄糖共转运蛋白2型(SGLT2)抑制剂的联合治疗在安全性和有效性方面是一种有希望的联合治疗选择。尽管这两种药物的联合治疗的价值,这两类药物之间的药代动力学药物相互作用已经评估了一些药物。因此,我们基于体外代谢和转运体介导的药物相互作用信息,以及在人体内的药物相互作用研究,回顾了在韩国上市的DPP-4抑制剂和SGLT2抑制剂之间潜在的药代动力学药物相互作用。
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引用次数: 9
Evaluation of pharmacokinetic interactions between amoxicillin, clarithromycin, and the potassium-competitive acid blocker YH4808 in healthy subjects. 评估阿莫西林、克拉霉素和钾竞争酸阻滞剂YH4808在健康受试者体内的药代动力学相互作用
IF 0.9 Q3 Medicine Pub Date : 2020-03-01 Epub Date: 2020-03-31 DOI: 10.12793/tcp.2020.28.e5
Woo Yul Lee, EunSil Oh, Mengqi Cui, Choon Ok Kim, Yeji Lim, Hunam Kim, Hyeonsoo Park, Sukyong Yoon, Min Soo Park, Taegon Hong

YH4808 is a novel potassium-competitive acid blocker that was developed as a therapeutic agent for gastric acid-related diseases; it may replace proton pump inhibitors, which are widely used in combination with amoxicillin and clarithromycin for Helicobacter pylori eradication. We compared the pharmacokinetic (PK) profiles and safety of amoxicillin, clarithromycin, and YH4808 used as monotherapies or in combination for evaluating potential drug interactions. An open-label, randomized, single-dose, Latin-square (4 × 4) crossover study was conducted in 32 healthy Korean volunteers. Subjects were randomly assigned to one of the 4 treatment sequences that consisted of 4 periods separated by 21-day washout intervals. PK parameters of YH4808, amoxicillin and clarithromycin administered in combination were compared with those of the respective monotherapies. The geometric mean ratios of the maximum concentration (Cmax) and the area under the time-concentration curve from time zero to time of the last quantifiable concentration (AUClast) of YH4808 increased during the triple therapy by 48.6% and 29.1%, respectively. Similarly, the Cmax and AUClast of M3 (active metabolite of YH4808) increased by 23.3% and 16.0%, respectively. The Cmax and AUClast of clarithromycin increased by 27.4% and 30.5%, and those of 14-hydroxyclarithromycin were increased by 23.1% and 32.4%, respectively. The corresponding amoxicillin values decreased during the triple therapy by 21.5% and 15.6%, respectively. There was no clinically significant change in safety assessment related to either monotherapies or triple therapy. In conclusion, amoxicillin, clarithromycin and YH4808 administered as triple therapy did not exhibit significant PK interactions and were not associated with safety issues.

Trial registration: ClinicalTrials.gov Identifier: NCT01921647.

YH4808是一种新型的钾竞争性酸阻滞剂,是一种用于胃酸相关疾病的治疗剂;它可能取代质子泵抑制剂,后者广泛与阿莫西林和克拉霉素联合用于根除幽门螺杆菌。我们比较了阿莫西林、克拉霉素和YH4808单独或联合使用的药代动力学(PK)特征和安全性,以评估潜在的药物相互作用。在32名健康的韩国志愿者中进行了一项开放标签、随机、单剂量、拉丁方(4 × 4)交叉研究。受试者被随机分配到4个治疗序列中的一个,该治疗序列由4个周期组成,间隔21天。比较YH4808与阿莫西林、克拉霉素联合用药与单独用药的PK参数。三联治疗期间,YH4808的最大浓度(Cmax)和时间-浓度曲线下面积(aulast)从时间0到最后可量化浓度(aulast)的几何平均比分别增加了48.6%和29.1%。同样,YH4808活性代谢物M3的Cmax和AUClast分别提高了23.3%和16.0%。克拉霉素的Cmax和AUClast分别提高了27.4%和30.5%,14-羟基克拉霉素的Cmax和AUClast分别提高了23.1%和32.4%。相应的阿莫西林值在三联治疗期间分别下降了21.5%和15.6%。无论是单药治疗还是三联治疗,安全性评估都没有明显的临床变化。综上所述,阿莫西林、克拉霉素和YH4808作为三联疗法,没有表现出显著的PK相互作用,也没有与安全性问题相关。试验注册:ClinicalTrials.gov标识符:NCT01921647。
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引用次数: 4
A review of three years' experience of the first pharmacometrics company in Korea. 回顾韩国第一家药物计量学公司三年的经验。
IF 0.9 Q3 Medicine Pub Date : 2019-12-01 Epub Date: 2019-12-31 DOI: 10.12793/tcp.2019.27.4.149
So Jin Lee, Sangil Jeon

As the pharmaceutical industry in Korea is reaching the golden era of drug discovery due to increased investments in research and development and government funds, the need for a more efficient tool for the quantitative analysis has emerged. Therefore, the demand for pharmacometrics (PMx) consultancy services increased. Higher quality service suitable for regulatory submission and out-licensing deals were desired. In this analysis, we compiled and summarized 3 years of experiences of Q-fitter, the first PMx consultancy service company providing PMx analysis to the pharmaceutical industry in Korea. The projects were organized by companies, company types, indications, therapeutic areas, drug development stages, purposes, and scope of services. Within each category, we subcategorized the sections and assessed proportions and a year-over-year trend. As a result, we observed an increase in the number of projects in an average of ~170% per year, with the most frequent types of companies collaborated being the domestic pharmaceutical companies. Among the projects, ~72% involved modeling and simulation using population pharmacokinetic (PK) models, and the other included non-compartmental analysis (NCA), drug-drug interaction (DDI) prediction, and interpretation of the modeling results. The most sought-after purpose in PMx analysis was first-in-human (FIH) dose prediction followed by PK analysis, next clinical trial prediction, and scenario-based simulation. Oncology has been the top therapeutic area of interest every year consisting of ~38% of total projects, followed by Neurology (~13%). From this review, we were able to characterize the PMx service needs and spot the trend of current PMx practices in Korea.

随着研究开发(r&d)投资和政府资金的增加,韩国制药产业进入了药物开发的黄金时代,因此需要更有效的定量分析工具。因此,对药物计量学(PMx)咨询服务的需求增加了。需要更高质量的服务,适合监管提交和外发许可交易。在本次分析中,我们对国内第一家为制药行业提供PMx分析的PMx咨询服务公司Q-fitter 3年的经验进行了整理和总结。这些项目按公司、公司类型、适应症、治疗领域、药物开发阶段、目的和服务范围进行组织。在每个类别中,我们对各部分进行了细分,并评估了比例和逐年趋势。结果,我们观察到项目数量以平均每年170%的速度增长,其中合作最频繁的公司类型是国内制药公司。其中,约72%的项目涉及群体药代动力学(PK)模型的建模和模拟,其余项目包括非区室分析(NCA)、药物-药物相互作用(DDI)预测和模型结果的解释。PMx分析最受欢迎的目的是首次人体(FIH)剂量预测,其次是PK分析,下一次临床试验预测和基于场景的模拟。肿瘤学每年都是最受关注的治疗领域,占总项目的38%,其次是神经病学(13%)。从这次审查中,我们能够描述PMx服务需求,并发现韩国当前PMx实践的趋势。
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引用次数: 1
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Translational and Clinical Pharmacology
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