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Diagnostic value of the Sirtuins family in acute rejection of kidney transplantation assessed on the basis of transcriptomics and animal experiments 基于转录组学和动物实验评估 Sirtuins 家族在肾移植急性排斥反应中的诊断价值
IF 1.6 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-08-22 DOI: 10.1016/j.trim.2024.102109

Background

The Sirtuins (SIRT) family plays a key role in the diagnosis and treatment of many renal diseases, but no studies have been reported in acute rejection of kidney transplantation. The aim of this study was to explore the diagnostic value of SIRT family change characteristics in acute rejection of kidney transplantation.

Methods

We first explored the SIRT family expression profile in renal tissues using the HPA database; subsequently, we explored the potential biological functions and mechanistic changes during acute rejection of kidney transplantation by GSEA enrichment analysis. The Cibersort algorithm specifies the level of immune cell infiltration and explores the correlation between the SIRT family and immune cells using correlation analysis; Next, we constructed a diagnostic model using “Logistic regression analysis” and “Nomogram model”, and evaluated the diagnostic model using calibration curves and ROC curves, and the decision curve (DCA) was used to evaluate the clinical diagnostic value of SIRT family changes; Finally, we constructed a model of acute rejection of rat kidney transplantation, and assessed rat kidney function by detecting the levels of urea nitrogen and creatinine in serum. Meanwhile, the expression level of SIRT family in kidney tissues was initially verified by transcriptome sequencing and RT-PCR.

Results

We found that all seven SIRT family members were located and expressed in renal tissues. The results of enrichment analysis revealed that a large number of immune-related biological functions and pathways are activated during acute rejection of kidney transplantation, the difference was statistically significant (p < 0.05). The Cibersort algorithm revealed significant changes in the level of infiltration of 10 immune cells (p < 0.05), while correlation analysis revealed a strong link between the SIRT family and immune cells (p < 0.05). We constructed a diagnostic model for acute rejection using seven SIRT families, and the ROC curves(AUC = 0.71)and calibration curves proved their good diagnostic value, and the DCA curves also proved the role of SIRT families in clinical decision-making. Next, we again demonstrated the good diagnostic performance of the SIRT family in ABMR and TCMR, respectively(ROC curves:AUC = 0.64,AUC = 0.81). Finally, in a rat model of acute rejection of kidney transplantation, we found that renal function (BUN and creatinine) was significantly impaired in rats in the Allo group compared to rats in the Syn group (P < 0.05). Meanwhile, by transcriptome analysis and RT-PCR assay, we found that, except for SIRT1, the remaining SIRT family members were significantly changed in kidney tissues (P < 0.05).

Conclusion

The SIRT family has significant changes during acute rejection in kidney transplantation, and the SIRT family may be able to serve as a potenti

背景Sirtuins(SIRT)家族在许多肾脏疾病的诊断和治疗中起着关键作用,但目前还没有关于肾移植急性排斥反应的研究报道。本研究旨在探讨 SIRT 家族变化特征在肾移植急性排斥反应中的诊断价值。方法 我们首先利用 HPA 数据库探讨了 SIRT 家族在肾组织中的表达谱;随后,我们通过 GSEA 富集分析探讨了肾移植急性排斥反应中潜在的生物学功能和机理变化。接着,我们利用 "Logistic回归分析 "和 "Nomogram模型 "构建了诊断模型,并利用校正曲线和ROC曲线对诊断模型进行了评估,利用决策曲线(DCA)评估了SIRT家族变化的临床诊断价值;最后,我们构建了大鼠肾移植急性排斥反应模型,并通过检测血清中尿素氮和肌酐的水平来评估大鼠的肾功能。同时,通过转录组测序和 RT-PCR 初步验证了 SIRT 家族在肾组织中的表达水平。富集分析结果显示,大量与免疫相关的生物功能和通路在肾移植急性排斥反应中被激活,差异有统计学意义(p <0.05)。Cibersort算法显示,10种免疫细胞的浸润水平发生了显著变化(p <0.05),而相关性分析显示,SIRT家族与免疫细胞之间存在密切联系(p <0.05)。我们利用七个 SIRT 家族构建了急性排斥反应的诊断模型,ROC 曲线(AUC = 0.71)和校准曲线证明了其良好的诊断价值,DCA 曲线也证明了 SIRT 家族在临床决策中的作用。接下来,我们再次证明了 SIRT 族在 ABMR 和 TCMR 中分别具有良好的诊断性能(ROC 曲线:AUC = 0.64,AUC = 0.81)。最后,在肾移植急性排斥反应大鼠模型中,我们发现与 Syn 组相比,Allo 组大鼠的肾功能(尿素氮和肌酐)明显受损(P < 0.05)。同时,通过转录组分析和 RT-PCR 检测,我们发现除 SIRT1 外,其余 SIRT 家族成员在肾脏组织中均发生了显著变化(P < 0.05)。
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引用次数: 0
The protective effect of Cloprostenol on ischemia/reperfusion injury in rat ovary: Histopathologic and immunohistochemically evaluation: An experimental study 氯前列烯醇对大鼠卵巢缺血再灌注损伤的保护作用:组织病理学和免疫组织化学评估:一项实验研究。
IF 1.6 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-08-14 DOI: 10.1016/j.trim.2024.102108

Objectıves

This study investigates whether Cloprostenol, a synthetic prostaglandin analog, could protect against ischemia/reperfusion (IR) injury in rat ovaries.

Methods

Adult female rats were divided into four groups: Sham groups, ischemia (IS) groups, ischemia/reperfusion (IR) groups, and Cloprostenol-treated (CT) groups. The IR injury model was established by clamping the ovarian pedicle for a specified period, followed by reperfusion. The CT group received a pre-treatment of Cloprostenol before inducing ischemia. Ovarian tissues were collected for histological, and immunohistochemical examination.

Results

The IS group exhibited severe morphological damage to ovarian tissues, including disrupted tissue architecture and increased apoptosis (p < 0.001). In contrast, the CT group displayed significantly improved ovarian histology, with notable preservation of ovarian tissue and reduced apoptotic activity (p < 0.01). Immunohistochemical analysis revealed that the levels of 8-Hydroxy-2-deoxyguanosine (8-OHdG), Caspase 3, Cyclooxygenase 2 (COX-2), and Interleukin 1 beta (IL-1β) staining, which were elevated in the IS and IR groups, were significantly diminished in the CT group (p < 0.05).

Conclusıon

Cloprostenol administration before IR injury in rat ovaries demonstrated a remarkable protective effect by improving histological damage and reducing DNA damage inflammation. These results highlight the therapeutic potential of Cloprostenol in safeguarding ovarian health against IR.

研究目的本研究探讨合成前列腺素类似物氯前列醇是否能保护大鼠卵巢免受缺血再灌注损伤。方法:成年雌性大鼠分为四组:缺血(IS)组、缺血/再灌注(IR)组和氯前列醇处理(CT)组。IR损伤模型是通过夹闭卵巢蒂一段时间,然后进行再灌注而建立的。CT 组在诱导缺血前接受氯前列醇预处理。收集卵巢组织进行组织学和免疫组化检查。结果:IS 组卵巢组织出现严重的形态学损伤,包括组织结构破坏和细胞凋亡增加(p
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引用次数: 0
Single cell RNA-sequencing identifies the effect of Normothermic ex vivo liver perfusion on liver-resident T cells 单细胞 RNA 序列分析确定了常温体外肝灌注对肝脏驻留 T 细胞的影响。
IF 1.6 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-08-13 DOI: 10.1016/j.trim.2024.102104

Background

Normothermic ex vivo liver perfusion (NEVLP) is an exciting strategy to preserve livers prior to transplant, however, the effects of NEVLP on the phenotype of tissue-resident immune cells is largely unknown. The presence of tissue-resident memory T cells (TRM) in the liver may protect against acute rejection and decrease allograft dysfunction. Therefore, we investigated the effects of NEVLP on liver TRMs and assessed the ability of anti-inflammatory cytokines to reduce TRM activation during NEVLP.

Methods

Rat livers underwent NEVLP with or without the addition of IL-10 and TGF-β. Naïve and cold storage livers served as controls. Following preservation, TRM T cell gene expression profiles were assessed through single cell RNA sequencing (scRNA-seq). Differential gene expression analysis was performed with Wilcoxon rank sum test to identify differentially expressed genes (DEGs) associated with a specific treatment group. Using the online Database for Annotation, Visualization and Integrated Discovery (DAVID), gene set enrichment was then conducted with Fisher's exact test on DEGs to highlight differentially regulated pathways and functional terms associated with treatment groups.

Results

Through scRNA-seq analysis, an atlas of liver-resident memory T cell subsets was created for all livers. TRM T cells could be identified in all livers, and through scRNA-seq, DEG was identified with Wilcoxon rank sum test at FDR < 0.05. Based on the gene set enrichment analysis of DEGs using Fisher's exact test, NEVLP is associated with downregulation of multiple gene enrichment pathways associated with surface proteins. Furthermore, NEVLP with anti-inflammatory cytokines was associated with down regulation of 52 genes in TRM T cells when compared to NEVLP alone (FDR <0.05), most of which are pro-inflammatory.

Conclusion

This is the first study to create an atlas of liver TRM T cells in the rat liver undergoing NEVLP and demonstrate the effects of NEVLP on liver TRM T cells at the single cell gene expression level.

背景:常温体外肝脏灌注(NEVLP)是移植前保存肝脏的一种令人兴奋的策略,然而,NEVLP对组织驻留免疫细胞表型的影响在很大程度上还不为人所知。肝脏中组织驻留记忆 T 细胞(TRM)的存在可防止急性排斥反应并减少同种异体移植的功能障碍。因此,我们研究了NEVLP对肝脏TRM的影响,并评估了抗炎细胞因子在NEVLP过程中减少TRM活化的能力:大鼠肝脏在添加或不添加IL-10和TGF-β的情况下进行NEVLP。正常肝脏和冷藏肝脏作为对照组。保存后,通过单细胞 RNA 测序(scRNA-seq)评估 TRM T 细胞基因表达谱。使用 Wilcoxon 秩和检验进行差异基因表达分析,以确定与特定处理组相关的差异表达基因(DEGs)。然后利用在线注释、可视化和综合发现数据库(DAVID),通过费雪精确检验对 DEGs 进行基因组富集,以突出与治疗组相关的差异调控通路和功能术语:结果:通过scRNA-seq分析,为所有肝脏绘制了肝脏驻留记忆T细胞亚群图谱。所有肝脏中的TRM T细胞都能被鉴定出来,通过scRNA-seq,在FDR下用Wilcoxon秩和检验鉴定出了DEG:这是第一项在接受 NEVLP 的大鼠肝脏中创建肝脏 TRM T 细胞图谱的研究,并在单细胞基因表达水平上证明了 NEVLP 对肝脏 TRM T 细胞的影响。
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引用次数: 0
Successful treatment with mesenchymal stem cells for steroid-refractory late-onset idiopathic pneumonia syndrome following allogeneic hematopoietic cell transplantation 使用间充质干细胞成功治疗异体造血细胞移植后类固醇难治性晚发型特发性肺炎综合征。
IF 1.6 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-08-12 DOI: 10.1016/j.trim.2024.102107

The reportedly poor outcome of late-onset idiopathic pneumonia syndrome (IPS) necessitates new approaches to its treatment. A 55-year-old man who had undergone allogeneic hematopoietic cell transplantation (allo-HCT) for myelodysplastic syndrome 1 year ago developed dyspnea with acute skin graft-versus-host disease (GVHD) flare-up while tapering immunosuppressive agents. He presented with acute respiratory distress syndrome with ground-glass opacities in the right upper and left lower lobes. All infectious tests, including multiplex polymerase chain reaction of nasal wash, were negative, and broad-spectrum antibiotic therapy was refractory. The patient was diagnosed with late-onset IPS and was refractory to methylprednisolone pulse therapy. He then showed a favorable response to mesenchymal stem cell (MSC) infusion. After eight infusions of MSCs, he had no IPS recurrence for over one year. Recently, preclinical studies have reported the potential therapeutic utility of MSC infusion for treating IPS, and our case supports its potential for treating late-onset IPS.

据报道,晚发性特发性肺炎综合征(IPS)的治疗效果不佳,因此需要新的治疗方法。一名 55 岁的男子一年前因骨髓增生异常综合征接受了异基因造血细胞移植(allo-HCT),在减量服用免疫抑制剂期间出现呼吸困难,并伴有急性皮肤移植物抗宿主病(GVHD)复发。他出现急性呼吸窘迫综合征,右上叶和左下叶出现磨玻璃不透明。所有感染性检查(包括鼻腔清洗液的多重聚合酶链反应)均为阴性,广谱抗生素治疗无效。患者被诊断为晚发性 IPS,甲基强的松龙脉冲疗法无效。随后,他对间质干细胞(MSC)输注产生了良好反应。经过八次间充质干细胞输注后,他在一年多的时间里没有再复发。最近,临床前研究报告了间充质干细胞输注治疗IPS的潜在疗效,我们的病例证实了间充质干细胞输注治疗晚发型IPS的潜力。
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引用次数: 0
Adipose tissue–derived mesenchymal stem cells promote the vascularization of pancreatic islets transplanted into decellularized pancreatic skeletons 脂肪组织间充质干细胞可促进移植到脱细胞胰腺骨架中的胰岛血管化。
IF 1.6 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-08-10 DOI: 10.1016/j.trim.2024.102106

We have recently developed a model of pancreatic islet transplantation into a decellularized pancreatic tail in rats. As the pancreatic skeletons completely lack endothelial cells, we investigated the effect of co-transplantation of mesenchymal stem cells and endothelial cells to promote revascularization.

Decellularized matrix of the pancreatic tail was prepared by perfusion with Triton X-100, sodium dodecyl sulfate and DNase solution. Isolated pancreatic islets were infused into the skeletons via the splenic vein either alone, together with adipose tissue–derived mesenchymal stem cells (adMSCs), or with a combination of adMSCs and rat endothelial cells (rat ECs). Repopulated skeletons were transplanted into the subcutaneous tissue and explanted 9 days later for histological examination. Possible immunomodulatory effects of rat adMSCs on the survival of highly immunogenic green protein–expressing human ECs were also tested after their transplantation beneath the renal capsule. The immunomodulatory effects of adMSCs were also tested in vitro using the Invitrogen Click-iT EdU system.

In the presence of adMSCs, the proliferation of splenocytes as a response to phytohaemagglutinin A was reduced by 47% (the stimulation index decreased from 1.7 to 0.9, P = 0.008) and the reaction to human ECs was reduced by 58% (the stimulation index decreased from 1.6 to 0.7, P = 0.03). Histological examination of the explanted skeletons seeded only with the islets showed their partial disintegration and only a rare presence of CD31-positive cells. However, skeletons seeded with a combination of islets and adMSCs showed preserved islet morphology and rich vascularity. In contrast, the addition of syngeneic rat ECs resulted in islet-cell necrosis with only few endothelial cells present. Live green fluorescence–positive endothelial cells transplanted either alone or with adMSCs were not detected beneath the renal capsule.

Though the adMSCs significantly reduced in vitro proliferation stimulated by either phytohaemagglutinin A or by xenogeneic human ECs, in vivo co-transplanted adMSCs did not suppress the post-transplant immune response to xenogeneic ECs. Even in the syngeneic model, ECs co-transplantation did not lead to sufficient vascularization in the transplant area. In contrast, islet co-transplantation together with adMSCs successfully promoted the revascularization of extracellular matrix in the subcutaneous tissue.

我们最近开发了一种将胰岛移植到脱细胞胰腺尾部的大鼠模型。由于胰腺骨架完全缺乏内皮细胞,我们研究了间充质干细胞和内皮细胞联合移植促进血管再通的效果。用Triton X-100、十二烷基硫酸钠和DNase溶液灌注制备胰腺尾部脱细胞基质。分离出的胰岛通过脾静脉注入骨架,或单独注入,或与脂肪组织间充质干细胞(adMSCs)一起注入,或与adMSCs和大鼠内皮细胞(大鼠ECs)一起注入。将重新填充的骨骼移植到皮下组织,9天后取出进行组织学检查。还测试了大鼠 adMSCs 移植到肾囊下后对表达高免疫原性绿色蛋白的人类 ECs 的存活可能产生的免疫调节作用。此外,还使用 Invitrogen Click-iT EdU 系统对 adMSCs 的免疫调节作用进行了体外测试。有 adMSCs 存在时,脾细胞对植物血凝素 A 的增殖减少了 47%(刺激指数从 1.7 降至 0.9,P = 0.008),对人类 EC 的反应减少了 58%(刺激指数从 1.6 降至 0.7,P = 0.03)。对只播种了胰岛的外植骨架进行的组织学检查显示,它们部分解体,只有极少数存在 CD31 阳性细胞。然而,混合播种了胰岛和 adMSCs 的骨架则保留了胰岛的形态和丰富的血管。相比之下,加入共生大鼠 EC 会导致胰岛细胞坏死,只有少量内皮细胞存在。单独移植或与 adMSCs 一起移植的绿色荧光阳性内皮细胞在肾囊下均未被发现。虽然 adMSCs 能显著减少植物血凝素 A 或异种人类 EC 刺激的体外增殖,但在体内联合移植 adMSCs 并不能抑制移植后对异种 EC 的免疫反应。即使在同种异体模型中,ECs 联合移植也不会导致移植区出现足够的血管化。相反,胰岛与 adMSCs 联合移植成功地促进了皮下组织细胞外基质的血管再造。
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引用次数: 0
Vagal nerve stimulation potential therapeutic benefits in acute lung rejection and transplantation 迷走神经刺激对急性肺部排斥和移植的潜在治疗效果。
IF 1.6 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-08-10 DOI: 10.1016/j.trim.2024.102105

Allograft rejection, accompanied by a rise in proinflammatory cytokines, is a leading cause of morbidity and mortality after lung transplantation. Immunosuppressive treatments are routinely employed as an effective way to prevent rejection, however, there is still an unmet need to develop new strategies to reduce the damage caused to transplanted organs by innate inflammatory responses. Recent research has shown that activating the vagus nerve's efferent arm regulates cytokine production and improves survival in experimental conditions of cytokine excess, such as sepsis, hemorrhagic shock, ischemia-reperfusion injury, among others. The cholinergic anti-inflammatory pathway can provide a localized, fast, and discrete response to inflammation by controlling the neuroimmune response and preventing excessive inflammation. This review intends to assess and discuss, the influence of noninvasive vagal nerve stimulation for prophylactic measures and supporting treatment in patients undergoing organ transplantation rejection with a prominent T-cell mediated immune response as a means of attenuating inflammation and leukocyte infiltration of the graft vessels.

异体移植排斥反应伴随着促炎细胞因子的升高,是肺移植后发病率和死亡率的主要原因。免疫抑制治疗是预防排斥反应的常规有效方法,然而,开发新的策略以减少先天性炎症反应对移植器官造成的损害的需求仍未得到满足。最近的研究表明,激活迷走神经的传出臂可调节细胞因子的产生,并在细胞因子过量的实验条件下(如败血症、失血性休克、缺血再灌注损伤等)提高存活率。胆碱能抗炎通路可以通过控制神经免疫反应和防止过度炎症,对炎症做出局部、快速和离散的反应。本综述旨在评估和讨论无创迷走神经刺激作为一种减轻炎症和白细胞对移植血管浸润的手段,对具有显著 T 细胞介导免疫反应的器官移植排斥反应患者的预防措施和辅助治疗的影响。
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引用次数: 0
Donor-derived cytomegalovirus-specific CD8+ T cells restricted to shared, donor-specific, or host-specific HLA after HLA mismatched hematopoietic stem cell transplantation 在 HLA 不匹配的造血干细胞移植后,来源于供体的巨细胞病毒特异性 CD8+ T 细胞受限于共享、供体特异性或宿主特异性 HLA。
IF 1.6 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-08-05 DOI: 10.1016/j.trim.2024.102099

Immune reconstitution after human leukocyte antigen (HLA)-mismatched (haploidentical) hematopoietic stem cell transplantation (haplo-HCT) can significantly influence long-term outcomes. The three possible HLA haplotypes after transplantation are: one carried by both the patient and the donor (shared HLA), one by donor only (donor-specific HLA), and one by patient only (host-specific HLA), and the donor T cells remain restricted to one of these three haplotypes. Understanding the presence of donor T cells restricted to each haplotype may provide more detailed insights into post-transplant immune response and potentially provide valuable information for the development of chimeric antigen receptor T cell or T cell receptor T cell constructs. In this study, patients or donors with HLA-A24 or HLA-A2 were tested with HLA-A*24:02- and A*02:01-restricted cytomegalovirus (CMV)-specific tetramers for detecting the respective HLA-restricted T cells. Sixty-four samples from 40 patients were assayed. More than half of the patients at day 90 and all patients by day 900 had shared HLA-restricted T cells. After day 90, half of the patients had donor-specific HLA-restricted T cells, but no host-specific HLA-restricted T cells were found. In the comparative analysis of the transplant types, shared HLA-restricted T cells were positive in all three categories: haplo-HCT (50%), 2-haplo-mis-HCT (75%), and spousal HCT (67%). Furthermore, donor-specific HLA-restricted T cells demonstrated positivity in haplo-HCT at 57% and in 2-haplo-mis-HCT at 60%, with a threshold of 0.01%. Donor-specific HLA-restricted T cells for spousal HCT were not examined due to the lack of an appropriate HLA combination for the tetramers.

The presence of shared HLA-restricted T cells explains the host defense after HLA-haploidentical transplantation, while the presence of donor-specific HLA-restricted T cells may account for host defense against hematotropic viruses, such as CMV. However, this study failed to detect host-specific HLA-restricted T cells, leaving the host defense against epitheliotropic viruses unresolved, thus requiring further investigation.

人类白细胞抗原(HLA)不匹配(单倍体)造血干细胞移植(haplo-HCT)后的免疫重建会严重影响长期预后。移植后可能出现的三种HLA单倍型分别是:患者和供体均携带的一种(共享HLA),仅供体携带的一种(供体特异性HLA),以及仅患者携带的一种(宿主特异性HLA)。了解受限于每种单倍型的供体T细胞的存在情况,可以更详细地了解移植后的免疫反应,并有可能为嵌合抗原受体T细胞或T细胞受体T细胞构建体的开发提供有价值的信息。在这项研究中,使用 HLA-A*24:02- 和 A*02:01- 限制性巨细胞病毒(CMV)特异性四聚体对 HLA-A24 或 HLA-A2 患者或供体进行了检测,以检测相应的 HLA 限制性 T 细胞。对 40 名患者的 64 份样本进行了检测。超过一半的患者在第 90 天和所有患者在第 900 天共享 HLA 限制性 T 细胞。第 90 天后,半数患者有供体特异性 HLA 限制性 T 细胞,但没有发现宿主特异性 HLA 限制性 T 细胞。在移植类型的比较分析中,共享的 HLA 限制性 T 细胞在所有三类移植中均呈阳性:单倍体-HCT(50%)、2-单倍体-同种异体-HCT(75%)和配偶 HCT(67%)。此外,捐献者特异性 HLA 限制性 T 细胞在单倍体-HCT 中的阳性率为 57%,在 2-单倍体-混杂型 HCT 中的阳性率为 60%,阈值为 0.01%。由于缺乏四聚体的适当 HLA 组合,配偶 HCT 的捐献者特异性 HLA 限制性 T 细胞未进行检测。共享的 HLA 限制性 T 细胞的存在解释了 HLA 同种异体移植后的宿主防御,而供体特异性 HLA 限制性 T 细胞的存在可能解释了宿主对 CMV 等血液病毒的防御。然而,这项研究未能检测到宿主特异性 HLA 限制性 T 细胞,因此宿主对上皮细胞病毒的防御能力问题仍未解决,需要进一步研究。
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引用次数: 0
Major drug-drug interaction between sirolimus and apalutamide in a liver transplant recipient 一名肝移植受者体内西罗莫司和阿帕鲁胺之间的重大药物相互作用。
IF 1.6 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-08-05 DOI: 10.1016/j.trim.2024.102103
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引用次数: 0
APOD: A biomarker associated with oxidative stress in acute rejection of kidney transplants based on multiple machine learning algorithms and animal experimental validation APOD:基于多种机器学习算法和动物实验验证的肾移植急性排斥反应氧化应激相关生物标志物。
IF 1.6 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-08-02 DOI: 10.1016/j.trim.2024.102101

Background

Oxidative stress is an unavoidable process in kidney transplantation and is closely related to the development of acute rejection after kidney transplantation. This study aimed to investigate the biomarkers associated with oxidative stress and their potential biological functions during acute rejection of kidney transplants.

Methods

We identified Hub genes using five machine learning algorithms based on differentially expressed genes (DEGs) in the kidney transplant acute rejection dataset GSE50058 and oxidative stress-related genes (OS) obtained from the MSigDB database, and validated them with the datasets GSE1563 and GSE9493, as well as with animal experiments; Subsequently, we explored the potential biological functions of Hub genes using single-gene GSEA enrichment analysis; The Cibersort algorithm was used to explore the altered levels of infiltration of 22 immune cells during acute rejection of renal transplantation, and a correlation analysis between Hub genes and immune cells was performed; Finally, we also explored transcription factors (TFs), miRNAs, and potential drugs that regulate Hub genes.

Results

We obtained a total of 57 genes, which we defined as oxidative stress-associated differential genes (DEOSGs), after intersecting DEGs during acute rejection of kidney transplants with OSs obtained from the MSigDB database; The results of enrichment analysis revealed that DEOSGs were mainly enriched in response to oxidative stress, response to reactive oxygen species, and regulation of oxidative stress and reactive oxygen species; Subsequently, we identified one Hub gene as APOD using five machine learning algorithms, which were validated by validation sets and animal experiments; The results of single-gene GSEA enrichment analysis revealed that APOD was closely associated with the regulation of immune signaling pathways during acute rejection of kidney transplants; The Cibersort algorithm found that the infiltration levels of a total of 10 immune cells were altered in acute rejection, while APOD was found to correlate with the expression of multiple immune cells; Finally, we also identified 154 TFs, 12 miRNAs, and 12 drugs or compounds associated with APOD regulation.

Conclusion

In this study, APOD was identified as a biomarker associated with oxidative stress during acute rejection of kidney transplants using multiple machine learning algorithms, which provides a potential therapeutic target for mitigating oxidative stress injury and reducing the incidence of acute rejection in kidney transplantation.

背景:氧化应激是肾移植中不可避免的过程,与肾移植后急性排斥反应的发生密切相关。本研究旨在探讨肾移植急性排斥反应期间与氧化应激相关的生物标志物及其潜在的生物学功能:我们根据肾移植急性排斥反应数据集 GSE50058 中的差异表达基因(DEGs)和从 MSigDB 数据库中获得的氧化应激相关基因(OS),使用五种机器学习算法识别了 Hub 基因,并通过数据集 GSE1563 和 GSE9493 以及动物实验进行了验证;随后,我们利用单基因GSEA富集分析探讨了Hub基因的潜在生物学功能;利用Cibersort算法探讨了肾移植急性排斥反应期间22种免疫细胞浸润水平的改变,并进行了Hub基因与免疫细胞之间的相关性分析;最后,我们还探讨了调控Hub基因的转录因子(TFs)、miRNAs和潜在药物。结果富集分析结果显示,DEOSGs主要富集于氧化应激反应、活性氧反应以及氧化应激和活性氧的调控;随后,我们利用五种机器学习算法确定了一个Hub基因为APOD,并通过验证集和动物实验进行了验证;单基因GSEA富集分析结果显示,APOD与肾移植急性排斥反应中免疫信号通路的调控密切相关;Cibersort算法发现,急性排斥反应中共有10种免疫细胞的浸润水平发生改变,而APOD与多种免疫细胞的表达相关;最后,我们还发现了与APOD调控相关的154个TFs、12个miRNA和12种药物或化合物。结论本研究利用多种机器学习算法确定了 APOD 是肾移植急性排斥反应期间与氧化应激相关的生物标志物,这为减轻氧化应激损伤和降低肾移植急性排斥反应的发生率提供了潜在的治疗靶点。
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引用次数: 0
Immune response against bacterial infection in organ transplant recipients 器官移植受者对细菌感染的免疫反应。
IF 1.6 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-07-31 DOI: 10.1016/j.trim.2024.102102

This comprehensive review delves into the intricate dynamics between the immune system and bacterial infections in organ transplant recipients. Its primary objective is to fill existing knowledge gaps while critically assessing the strengths and weaknesses of current research. The paper accentuates the delicate balance that must be struck between preventing graft rejection through immunosuppression and maintaining robust immunity against bacterial threats. In this context, personalized medicine emerges as a transformative concept, offering the potential to revolutionize clinical outcomes by tailoring immunosuppressive regimens and vaccination strategies to the unique profiles of transplant recipients. By emphasizing the pivotal role of continuous monitoring, the review underscores the necessity for vigilant surveillance of transplant recipients to detect bacterial infections and associated immune responses early, thereby reducing the risk of severe infections and ultimately improving patient outcomes. Furthermore, the study highlights the significance of the host microbiome in shaping immune responses, suggesting that interventions targeting the microbiome hold promise for enhancing bacterial immunity in transplant recipients, both in research and clinical practice. In terms of future research directions, the review advocates for large-scale, longitudinal studies encompassing diverse patient cohorts to provide more comprehensive insights into post-transplant immune responses. It also advocates integrating multi-omics approaches, including genomics, transcriptomics, proteomics, and microbiome data, to understand immune responses and their underlying mechanisms. In conclusion, this review significantly enriches our understanding of immune responses in transplant recipients. It paves the way for more effective and personalized approaches to managing infections in this complex setting.

这篇综合性综述深入探讨了器官移植受者免疫系统与细菌感染之间错综复杂的动态关系。其主要目的是填补现有的知识空白,同时批判性地评估当前研究的优缺点。论文强调了在通过免疫抑制防止移植排斥反应和保持强大免疫力抵御细菌威胁之间必须达成的微妙平衡。在此背景下,个性化医疗成为一个变革性的概念,通过根据移植受者的独特情况定制免疫抑制方案和疫苗接种策略,有望彻底改变临床结果。通过强调持续监测的关键作用,该综述强调了对移植受者进行警惕性监测的必要性,以便及早发现细菌感染和相关的免疫反应,从而降低严重感染的风险,最终改善患者的预后。此外,该研究还强调了宿主微生物组在形成免疫反应方面的重要作用,表明针对微生物组的干预措施有望在研究和临床实践中增强移植受者的细菌免疫力。就未来的研究方向而言,该综述主张开展大规模的纵向研究,涵盖不同的患者队列,以便更全面地了解移植后的免疫反应。综述还提倡整合多组学方法,包括基因组学、转录组学、蛋白质组学和微生物组数据,以了解免疫反应及其内在机制。总之,这篇综述极大地丰富了我们对移植受者免疫反应的理解。它为在这一复杂环境中采用更有效、更个性化的方法管理感染铺平了道路。
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期刊
Transplant immunology
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