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A Simple Method to Establish Metaphase Chromosomes from Individual Zebrafish Embryos. 一种从斑马鱼个体胚胎中建立中期染色体的简单方法。
IF 2 4区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2021-10-01 Epub Date: 2021-08-11 DOI: 10.1089/zeb.2021.0014
Halida Thanveer Asana Marican, Lucas W H Sun, Hongyuan Shen
Cytogenetic approach based on metaphase chromosomes established from dividing cells enables direct microscopic visualization of individual chromosomes, a powerful technique to investigate aneuploidy, chromosome aberrations, and genomic instability. In this study, we describe a simple method based on direct blocking of metaphases in individual zebrafish embryo and dropping slides with temperature changes, water vapor, and acetic acid treatment to increase the metaphase diameters. We demonstrate that well-separated metaphases could be established from single zebrafish embryos using this method. Our method could be further adapted for the analyses of DNA damage, chromosome aberrations, and genomic instability using zebrafish and other teleost models.
基于分裂细胞建立的中期染色体的细胞遗传学方法可以直接在显微镜下观察单个染色体,这是一种研究非整倍体、染色体畸变和基因组不稳定性的强大技术。在本研究中,我们描述了一种简单的方法,即直接阻断斑马鱼个体胚胎的中期,并在温度变化、水蒸气和醋酸处理的情况下滴载玻片,以增加中期直径。我们证明用这种方法可以从单个斑马鱼胚胎中建立分离良好的中期。我们的方法可以进一步适用于斑马鱼和其他硬骨鱼模型的DNA损伤、染色体畸变和基因组不稳定性分析。
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引用次数: 1
Cytogenetics from the Dock: A New Postmortem Protocol Makes It Possible to Obtain Cytogenetic Preparations from Marine Fish. 码头细胞遗传学:一种新的死后处理方法使从海鱼获得细胞遗传学制剂成为可能。
IF 2 4区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2021-10-01 Epub Date: 2021-09-02 DOI: 10.1089/zeb.2021.0041
Cristian Araya-Jaime, Claudio Palma-Rojas, Natalia Lam, Elisabeth Von Brand

Cytogenetic studies in marine fish are scarce, and elemental cytogenetic information is available for not >2% of the species. Traditional cytogenetic methods require living individuals for their application, making the analysis of marine ichthyofauna very difficult. In this study, we present a detailed new protocol to obtain cytogenetic preparations from marine fish, through access to specimens in postmortem condition. The application of this protocol made it possible to access elemental cytogenetic information (diploid number) in six native species of the South Pacific Ocean, representative of five orders. In this way, we provide a new low-cost methodological tool for focused or large-scale cytogenetic analysis, both in economically important, native, or threatened species.

海洋鱼类的细胞遗传学研究很少,只有不到2%的物种有基本的细胞遗传学信息。传统的细胞遗传学方法需要活的个体才能应用,这使得海洋鱼系的分析非常困难。在这项研究中,我们提出了一种详细的新方案,通过获取死后条件下的标本,从海鱼中获得细胞遗传学制剂。该协议的应用使得获取南太平洋5目6种本地物种的细胞遗传学基本信息(二倍体数目)成为可能。通过这种方式,我们提供了一种新的低成本的方法工具,用于集中或大规模的细胞遗传学分析,无论是在经济上重要的,本地的,还是受威胁的物种。
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引用次数: 0
Propolis Can Improve Caudal Fin Regeneration in Zebrafish (Danio rerio) Induced by The Combined Administration of Alloxan and Glucose. 蜂胶对四氧嘧啶和葡萄糖联合给药诱导斑马鱼尾鳍再生的促进作用。
IF 2 4区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2021-08-01 Epub Date: 2021-07-23 DOI: 10.1089/zeb.2020.1969
Indra Wibowo, Nuruliawaty Utami, Tjandra Anggraeni, Anggraini Barlian, Ramadhani Eka Putra, Annisa Devi Indriani, Rina Masadah, Savira Ekawardhani

Hyperglycemia, a primary symptom in diabetes mellitus, is associated with difficulties in wound healing and regeneration. This condition is due to the length of the inflammatory phase and free radicals. Furthermore, there is evidence that molecular pathogenesis is involved in impaired wound healing in diabetics. As an animal model, zebrafish have many shared orthologous genes with human that are involved in protein regulation of wound healing and regeneration. Little is known about natural drugs that may be used to treat complications of wound healing in diabetes. Propolis, however, is known to consist of various organic compounds such as phenols and flavonoids with antioxidant and anti-inflammatory activities. This research aims to study propolis' effect on caudal fin regeneration and relative expression of several genes belonging to Hedgehog, bone morphogenetic protein (BMP), and Wnt signaling hyperglycemic (HG) zebrafish. GC-MS analysis and antioxidant activity testing were performed on ethanolic extract of propolis (EEP). Caudal fin regeneration was analyzed using ImageJ; blood glucose levels were measured; and relative gene expression analysis of shha, igf2a, bmp2b, and col1a2 was performed by the real-time polymerase chain reaction method with the β-actin housekeeping gene. Impairment of caudal fin regeneration in zebrafish hyperglycemia was characterized by a low percentage of regeneration and decreased relative gene expression. EEP at 15 ppm could increase the percentage of caudal fin regeneration and the expression of shha, igf2a, bmp2b, and col1a2. Based on the results, it appears that phenols and flavonoids from the EEP can improve the caudal fin regeneration of HG zebrafish.

高血糖是糖尿病的主要症状,与伤口愈合和再生困难有关。这种情况是由于炎症期的长度和自由基。此外,有证据表明糖尿病患者伤口愈合受损与分子发病机制有关。作为动物模型,斑马鱼与人类有许多共同的同源基因,这些基因参与伤口愈合和再生的蛋白质调控。对于可能用于治疗糖尿病伤口愈合并发症的天然药物,我们所知甚少。然而,蜂胶是由各种有机化合物组成的,如酚类和类黄酮,具有抗氧化和抗炎活性。本研究旨在研究蜂胶对高血糖斑马鱼尾鳍再生的影响,以及刺猬蛋白(Hedgehog)、骨形态发生蛋白(bone morphogenetic protein, BMP)和Wnt信号传导基因的相对表达。对蜂胶乙醇提取物(EEP)进行气相色谱-质谱分析和抗氧化活性测定。利用ImageJ分析尾鳍再生;测量血糖水平;利用β-肌动蛋白管家基因实时聚合酶链反应法分析shha、igf2a、bmp2b和col1a2的相关基因表达。高血糖斑马鱼尾鳍再生障碍的特征是再生百分比低,相关基因表达减少。15 ppm的EEP能提高尾鳍再生率和shha、igf2a、bmp2b和col1a2的表达。综上所述,黄酮类物质和酚类物质可促进HG斑马鱼尾鳍的再生。
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引用次数: 4
Zebrafish Tumor Graft Transplantation to Grow Tumors In Vivo That Engraft Poorly as Single Cell Suspensions. 斑马鱼肿瘤移植物移植在体内生长肿瘤,移植物作为单细胞悬浮液效果不佳。
IF 2 4区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2021-08-01 Epub Date: 2021-05-24 DOI: 10.1089/zeb.2021.0006
Amanda Lipsitt, Nicole R Hensch, Rodrigo Moreno-Campos, Kunal Baxi, Jiangfei Chen, Anil K Challa, Eleanor Y Chen, Myron S Ignatius

Angiosarcoma is a clinically aggressive tumor with a high rate of mortality. It can arise in vascular or lymphatic tissues, involve any part of the body, and aggressively spread locally or metastasize. Angiosarcomas spontaneously develop in the tp53 deleted (tp53del/del) zebrafish mutant. However, established protocols for tumor dissection and transplantation of single cell suspensions of angiosarcoma tumors result in inferior implantation rates. To resolve these complications, we developed a new tumor grafting technique for engraftment of angiosarcoma and similar tumors in zebrafish, which maintains the tumor microenvironment and has superior rates of engraftment.

血管肉瘤是一种临床侵袭性肿瘤,死亡率高。它可以出现在血管或淋巴组织,涉及身体的任何部位,并积极地局部扩散或转移。血管肉瘤在tp53缺失(tp53del/del)斑马鱼突变体中自发发生。然而,血管肉瘤肿瘤的单细胞悬浮液的肿瘤解剖和移植的既定方案导致较低的植入率。为了解决这些并发症,我们开发了一种新的肿瘤移植技术,用于血管肉瘤和类似肿瘤在斑马鱼体内的植入,该技术维持了肿瘤微环境,具有优越的植入率。
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引用次数: 1
Effects of Sex and Group Size on Behavior and Brain Biogenic Amines in Short-Lived Turquoise Killifish (Nothobranchius furzeri). 性别和群体大小对短寿绿松石鳉行为和脑生物胺的影响。
IF 2 4区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2021-08-01 Epub Date: 2021-07-29 DOI: 10.1089/zeb.2021.0001
Valentina Evsiukova, Egor Antonov, Alexander V Kulikov

Short-lived turquoise killifish (Nothobranchius furzeri) becomes a popular model species for neuroscience. However, the effects of sex and rearing conditions on behavior and brain monoamines in N. furzeri are unknown. In this article, we study the body mass, behavior in the novel tank diving test, levels of noradrenaline (NA), dopamine (DA), serotonin (5-HT), 3,4-dihydroxyphenylacetic acid (DOPAC), and 5-hydroxyindoleacetic acid (5-HIAA) in the brain of 108 day-old N. furzeri males and females reared in small (one male and one or two females in 4-L tanks) and large (four males and four females in 25-L tanks) groups. Males were heavier and had a lower NA level in the brain compared with females. The behavior of males and females did not differ in the novel tank diving test. Their DA, 5-HT, DOPAC, and 5-HIAA levels in the brain did not differ too. Males from small groups spent more time near the tank's bottom. Rearing in small groups reduced the DA level in the female brain and the DOPAC level in female and male brains. However, group size did not affect body mass, 5-HT and 5-HIAA levels in the brain. Thus, group size is important for behavior and neuroscience studies of N. furzeri.

寿命短的绿松石鳉(Nothobranchius furzeri)成为神经科学研究的热门模式物种。然而,性别和饲养条件对褐绒夜蛾行为和脑单胺的影响尚不清楚。在本文中,我们研究了体重,行为在小说中坦克潜水测试,水平的去甲肾上腺素(NA)、多巴胺(DA)、5 -羟色胺(5 -),3,4-dihydroxyphenylacetic酸(DOPAC)和5-hydroxyindoleacetic酸(5-HIAA)在108年的大脑陈n的小鱼雄性和雌性饲养在小雌性(一个男性和一个或两个坦克)和大型(四个男人和四个女人25 l坦克)组。与女性相比,男性体重更重,大脑中的NA水平也更低。在新型的水箱潜水试验中,雄性和雌性的行为没有差异。他们大脑中的DA、5-羟色胺、DOPAC和5-HIAA水平也没有差异。小群体的雄性花更多的时间在水箱底部附近。小群体饲养降低了雌性大脑中的DA水平和雌性和雄性大脑中的DOPAC水平。然而,组的大小并不影响体重、大脑中5-羟色胺和5-HIAA的水平。因此,群体大小对于狐尾乳螨的行为和神经科学研究非常重要。
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引用次数: 2
Colored-Light Preference in Zebrafish (Danio rerio). 斑马鱼的色光偏好。
IF 2 4区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2021-08-01 Epub Date: 2021-06-08 DOI: 10.1089/zeb.2020.1977
Alexis Buatois, Samuel Nguyen, Celine Bailleul, Robert Gerlai

Over the past decade, the zebrafish has been increasingly employed in biomedical neuroscience research due to its numerous evolutionarily conserved features with mammals. Its simple brain and the several molecular tools available for this species make the zebrafish an appealing model to study mechanisms of complex brain functions, including learning and memory. Most learning paradigms developed for the zebrafish have employed visual stimuli as the associative cue. Spontaneous color preference is a potential confound in such studies. It has been analyzed in zebrafish using colored objects, but with conflicting results. It has rarely been explored with colored light, despite the increasing use of computer-generated visual stimuli. Here, we employ a light emitting diode (RGB-system) light-based color preference task in the plus-maze. In two independent experiments, zebrafish were tested in a four-choice or dual-choice condition by using four different-colored lights (red, green, blue and yellow). Our results suggest a light preference hierarchy that depends on context, since yellow was preferred over green in the four-choice condition whereas blue was preferred over all other colors in the two-choice condition. These results are useful for future color-light-based learning experiments in zebrafish.

在过去的十年中,斑马鱼越来越多地被用于生物医学神经科学研究,因为它与哺乳动物有许多进化保守的特征。它简单的大脑和几种分子工具使斑马鱼成为研究复杂大脑功能机制的一个有吸引力的模型,包括学习和记忆。大多数为斑马鱼开发的学习范式都采用视觉刺激作为联想线索。自发的颜色偏好在这类研究中是一个潜在的混淆。已经在斑马鱼身上用有色物体进行了分析,但结果却相互矛盾。尽管越来越多地使用计算机生成的视觉刺激,但很少用彩色光来探索它。在这里,我们采用了一个基于发光二极管(rgb系统)光的颜色偏好任务。在两个独立的实验中,斑马鱼被测试在四选择或双选择条件下,使用四种不同颜色的灯(红、绿、蓝、黄)。我们的结果表明,光的偏好层次取决于环境,因为在四种选择条件下,黄色比绿色更受欢迎,而在两种选择条件下,蓝色比所有其他颜色更受欢迎。这些结果对未来斑马鱼基于色光的学习实验很有帮助。
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引用次数: 3
Welfare Assessment of Adult Laboratory Zebrafish: A Practical Guide. 实验室成年斑马鱼的福利评估:实用指南
IF 2 4区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2021-08-01 Epub Date: 2021-07-02 DOI: 10.1089/zeb.2021.0021
Sibylle Sabrautzki, Manuel Miller, Erika Kague, Markus Brielmeier

Teleost fish such as Danio rerio (zebrafish) have been successfully used in biomedical research since decades. Genetically altered fish lines obtained by state-of-the-art genetic technologies are serving as well-known model organisms. In Europe, following Directive 2010/63/EU, generation, breeding, and husbandry of new genetically altered lines of laboratory animals require governmental state approval in case pain, suffering, distress, or long-lasting harm to the offspring derived by breeding of these lines cannot be excluded. The identification and assessment of pain, distress, or harm, according to a severity classification of mild, moderate, severe, or humane endpoint, became a new challenging task for all scientists, animal technicians, and veterinarians for daily work with laboratory zebrafish. In this study, we describe the performance of the assessment of welfare parameters of selected pathologic phenotypes and abnormalities frequently found in laboratory fish facilities based on veterinary, biological, and physiological aspects by using a dedicated score sheet. In a colony of zebrafish, we evaluated the frequency of genotype-independent abnormalities observed within 3 years. We give examples for severity classification and measures once an abnormality has been identified according to the 3Rs (Replacement, Reduction and Refinement).

几十年来,斑马鱼(Danio rerio)等远摄鱼类已成功用于生物医学研究。通过最先进的基因技术获得的转基因鱼类品系是众所周知的模式生物。在欧洲,根据第 2010/63/EU 号指令,新的转基因实验动物品系的产生、繁育和饲养需要获得政府部门的批准,以防不能排除这些品系繁育所产生的后代遭受痛苦、折磨或长期伤害。按照轻度、中度、重度或人道终点的严重程度分类,对疼痛、痛苦或伤害进行鉴定和评估,成为所有科学家、动物技术人员和兽医在日常工作中与实验斑马鱼打交道的一项新的挑战性任务。在本研究中,我们介绍了使用专用评分表,根据兽医、生物学和生理学方面的因素,对实验室鱼类设施中经常发现的某些病理表型和异常的福利参数进行评估的情况。在斑马鱼群中,我们评估了 3 年内观察到的与基因型无关的异常的频率。一旦发现异常,我们将根据 3R(更换、减少和改进)给出严重程度分类和措施的示例。
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引用次数: 0
Rapid Generation of Pigment Free, Immobile Zebrafish Embryos and Larvae in Any Genetic Background Using CRISPR-Cas9 dgRNPs. 利用CRISPR-Cas9 dgRNPs快速生成任何遗传背景下无色素、不动的斑马鱼胚胎和幼虫
IF 2 4区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2021-08-01 Epub Date: 2021-06-02 DOI: 10.1089/zeb.2021.0011
Andrew E Davis, Daniel Castranova, Brant M Weinstein

The ability to carry out high-resolution, high-magnification optical imaging of living animals is one of the most attractive features of the zebrafish as a model organism. However, increasing amounts of pigmentation as development proceeds and difficulties in maintaining sustained immobilization of healthy, living animals remain challenges for live imaging. Chemical treatments can be used to suppress pigment formation and movement, but these treatments can lead to developmental defects. Genetic mutants can also be used to eliminate pigment formation and immobilize animals, but maintaining these mutants in lines carrying other combinations of transgenes and mutants is difficult and laborious. In this study, we show that CRISPR duplex guide ribonucleoproteins (dgRNPs) targeting the slc45a2 (albino) and chrna1 (nic1) genes can be used to efficiently suppress pigment formation in and immobilize F0 injected animals. CRISPR dgRNPs can be used to generate pigment-free, immobile zebrafish embryos and larvae in any transgenic and/or mutant-carrying background, greatly facilitating high-resolution imaging and analysis of the many transgenic and mutant lines available in the zebrafish.

对活体动物进行高分辨率、高倍率光学成像的能力是斑马鱼作为模式生物最吸引人的特征之一。然而,随着发育的进行,色素沉着量的增加以及维持健康活体动物持续固定的困难仍然是活体成像的挑战。化学处理可以抑制色素的形成和运动,但这些处理可能导致发育缺陷。基因突变体也可用于消除色素形成和固定动物,但在携带其他转基因和突变体组合的品种中维持这些突变体是困难和费力的。在本研究中,我们发现靶向slc45a2(白化病)和chrna1 (nic1)基因的CRISPR双导核糖核蛋白(dgRNPs)可有效抑制F0注射动物的色素形成并使其固定化。CRISPR dgRNPs可用于在任何转基因和/或携带突变体的背景下产生无色素、不动的斑马鱼胚胎和幼虫,极大地促进了对斑马鱼中许多转基因和突变系的高分辨率成像和分析。
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引用次数: 4
A Systematic Analysis of Metal and Metalloid Concentrations in Eight Zebrafish Recirculating Water Systems. 八个斑马鱼循环水系统中金属和类金属浓度的系统分析。
IF 2 4区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2021-08-01 Epub Date: 2021-07-05 DOI: 10.1089/zeb.2020.1970
Xavier Langa, Patrick Neuhaus, David Lains, Theodora J Stewart, Nadine Borel, Ana C Certal, Joana F Monteiro, Peter Aleström, Eduardo Diaz, Indre Piragyte, Lars Bräutigam, Rodolfo Vázquez, Ruslan Hlushchuk, Lorenz Gfeller, Adrien Mestrot, Moritz Bigalke, Zoltan M Varga, Nadia Mercader

Metals and metalloids are integral to biological processes and play key roles in physiology and metabolism. Nonetheless, overexposure to some metals or lack of others can lead to serious health consequences. In this study, eight zebrafish facilities collaborated to generate a multielement analysis of their centralized recirculating water systems. We report a first set of average concentrations for 46 elements detected in zebrafish facilities. Our results help to establish an initial baseline for trouble-shooting purposes, and in general for safe ranges of metal concentrations in recirculating water systems, supporting reproducible scientific research outcomes with zebrafish.

金属和类金属是生物过程的组成部分,在生理和代谢中起着关键作用。然而,过度接触某些金属或缺乏其他金属会导致严重的健康后果。在这项研究中,八个斑马鱼设施合作对其集中循环水系统进行了多元素分析。我们报告了在斑马鱼设施中检测到的46种元素的第一组平均浓度。我们的研究结果有助于建立一个初步的基线,用于故障排除,以及在循环水系统中金属浓度的安全范围,支持斑马鱼可重复的科学研究成果。
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引用次数: 1
Cryptic Diversity in the Terminal Portion of the Chromosomes of the Dogtooth Characins, Family Cynodontidae (Ostariophysi: Characiformes). 犬齿科犬齿性状染色体末端的隐性多样性(动物物理学:性状)。
IF 2 4区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2021-06-01 Epub Date: 2021-04-12 DOI: 10.1089/zeb.2020.1973
Vanessa Susan Pinheiro Figliuolo, Alex Matheus Viana Ferreira, Erika Milena Corrêa Guimarães, José Francisco de Sousa E Souza, Eliana Feldberg, Maria Claudia Gross

The chromosomes of the dogtooth characins, fish species of the family Cynodontidae, have only a relatively small amount of heterochromatin, including the terminal portion. Curiously, in the cynodontid Cynodon gibbus, the terminal portion is rich in repetitive DNAs, including transposable retroelements and microsatellite sequences. Given this, this study investigated the composition of the terminal portion of the chromosomes of two cynodontid species (Rhaphiodon vulpinus and Hydrolycus armatus), to compile a database for the evaluation of all three cynodontid genera, and in particular, verify the possible tendency for the accumulation of repetitive DNAs in the terminal portion of the chromosomes of C. gibbus, H. armatus, and R. vulpinus. The Rex1, Rex3, and Rex6 transposable retroelements and the (CA)15, (GA)15, (GATA)8, (GACA)8, (CAT)10, and (CAC)10 microsatellite motifs are found primarily in the terminal portion of the chromosomes of the species analyzed in this study, except R. vulpinus, which has no evidence of the presence of Rex1 or Rex3 through the fluorescent in situ hybridization technique. The mapping of the repetitive sequences, principally the microsatellite motifs, indicates a marked tendency for the accumulation of these sequences in the terminal portions of the chromosomes, which may have played a fundamental role in the differentiation of the three species.

犬齿鱼(Cynodontidae)的犬齿鱼的染色体只有相对少量的异染色质,包括末端部分。奇怪的是,在cynodontid Cynodon gibbus中,末端部分富含重复dna,包括转座逆转录元件和微卫星序列。鉴于此,本研究对两种犬齿动物(Rhaphiodon vulpinus和Hydrolycus armatus)染色体末端部分的组成进行了研究,建立了对这三种犬齿动物进行评价的数据库,尤其验证了C. gibbus、H. armatus和R. vulpinus染色体末端部分可能存在重复dna积累的趋势。Rex1、Rex3和Rex6转座逆转录元件以及(CA)15、(GA)15、(GATA)8、(GACA)8、(CAT)10和(CAC)10微卫星基序主要存在于本研究分析的物种的染色体末端,但通过荧光原位杂交技术未发现vulpinus存在Rex1或Rex3的证据。重复序列的定位,主要是微卫星基序,表明这些序列在染色体末端的积累有明显的趋势,这可能在三个物种的分化中发挥了根本作用。
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引用次数: 2
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