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Effects of Global Discourse Coherence on Local Contextual Predictions 全局语篇连贯对局部语境预测的影响
Pub Date : 2022-07-26 DOI: 10.2218/eorc.2022.7080
Georgia Carter
Context is vitally important for how we understand the world around us, and this is particularly so with language. We know that humans use a range of linguistic cues when understanding language to help tailor their expectations about upcoming linguistic material, contributing to the seamless nature of comprehension. Linguistic cues fall into two different levels of context – the local, sentence context and the wider, global context. Some linguistic cues that are considered to be global are knowledge about the world or the speaker. These have been found to facilitate semantic processing when they align with linguistic expectations through faster reading times of predictable content. One other global contextual cue that may be of use to how we represent meaning and understand the world around us is the coherence of a discourse. The current, pre-registered study investigates the interaction between discourse coherence and word predictability during language comprehension. To do so, we used an online, self-paced reading paradigm and had participants read three-sentence discourses that differed on the coherence of the final target sentence with the first two preamble sentences, and also on the predictability of a critical word within the target sentence. From our first experiment, we found that people were sensitive to the coherence of the overall three-sentence narrative, with slower reading times for trials that had less coherent preamble contexts. After exploration of our data, we pre-registered two further studies to investigate whether this effect is still present in more extreme experimental settings. For Experiment 2, we altered the ratio of less and more coherent contexts to see if people still make use of discourse coherence as a linguistic cue for informing their expectations when there was a greater proportion of more coherent trials. We found this to be the case. In Experiment 3, we replaced our less predictable critical words that were semantically relevant to the overall message of the target sentence with completely anomalous words. Here, we found people were faster to read the highly predictable critical words and slower to read the anomalous critical words when they first read more coherent contexts, but not when they first read less coherent contexts. This suggests that people are able to use relevant linguistic cues from both levels of context, and do so flexibly depending on the degree of contextual support at the global discourse level.     
语境对于我们如何理解周围的世界至关重要,对于语言来说尤其如此。我们知道,人类在理解语言时使用一系列语言线索来帮助调整他们对即将到来的语言材料的期望,从而促进理解的无缝本质。语言线索分为两种不同层次的语境——局部的句子语境和更广泛的全局语境。一些被认为是全球性的语言线索是关于世界或说话者的知识。研究发现,当他们通过更快地阅读可预测的内容,与语言预期保持一致时,这些词汇有助于语义处理。另一个可能对我们如何表达意义和理解周围世界有用的全球语境线索是话语的连贯性。当前的预注册研究探讨了语言理解过程中语篇连贯和词语可预测性之间的相互作用。为了做到这一点,我们使用了一个在线的、自定节奏的阅读范式,让参与者阅读三句话的话语,这些话语在最后的目标句子与前两个序言句子的连贯性以及目标句子中关键词的可预测性方面存在差异。从我们的第一个实验中,我们发现人们对整个三句话叙述的连贯性很敏感,在序言上下文不太连贯的情况下,阅读时间会变慢。在研究了我们的数据之后,我们预先登记了两项进一步的研究,以调查这种效应是否在更极端的实验环境中仍然存在。对于实验2,我们改变了不连贯和更连贯的语境的比例,看看当有更连贯的实验的比例更大时,人们是否仍然使用话语连贯作为告知他们期望的语言线索。我们发现情况就是这样。在实验3中,我们用完全异常的词取代了与目标句子的整体信息在语义上相关的不太可预测的关键词。在这里,我们发现,当人们第一次阅读更连贯的语境时,他们阅读高度可预测的批评词的速度更快,阅读异常批评词的速度更慢,但当他们第一次阅读不连贯的语境时,情况并非如此。这表明人们能够从语境的两个层面上使用相关的语言线索,并根据语境在全局话语层面上的支持程度灵活地使用。
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引用次数: 0
Research Culture and Open Research 研究文化与开放研究
Pub Date : 2022-07-26 DOI: 10.2218/eorc.2022.7007
Jane Hillston
In the last few years there has been an increased focus on research culture and the importance of creating a culture that is open and inclusive.  This has been highlighted by the UK Government’s Research and Development People and Culture Strategy and the Concordat for the Career Development for Researchers as well as various initiatives by funders such as the Royal Society, the Wellcome Trust and UKRI.  Within the University of Edinburgh a Research Cultures Working Group has been established and tasked with creating a Research Cultures Acton Plan for the University.  I will talk about the working group and the action plan that is emerging, particularly touching on the role of recognition and reward towards creating a positive culture and how open research can contribute to that.
在过去的几年里,人们越来越关注研究文化,以及创造一个开放和包容的文化的重要性。英国政府的研发人员和文化战略、研究人员职业发展协议以及皇家学会、威康信托基金会和UKRI等资助者的各种倡议都强调了这一点。爱丁堡大学成立了一个研究文化工作组,其任务是为爱丁堡大学制定研究文化行动计划。我将谈到工作组和正在出现的行动计划,特别是关于认可和奖励在创造积极文化方面的作用,以及开放研究如何对此做出贡献。
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引用次数: 0
Research Management in "Many Analysts" Projects “多分析师”项目的研究管理
Pub Date : 2022-07-26 DOI: 10.2218/eorc.2022.7099
Stefano Coretta, Joseph Casillas, Timo B. Roettger
With the recent increase of large scientific collaborations in the form of "Many Analysts" projects, research project management has quickly moved from small/medium-scale coordination to large-scale planning. Project coordinators are faced with unprecedented challenges which make "Many Analysts" projects  time consuming and resource demanding. With this poster, we would like to share our experience managing the ongoing Many Speech Analysis project (https://many-speech-analyses.github.io) and offer tips and logistic solutions to minimise the resource overhead required for such type of projects. We will also discuss which steps in the process didn't go as expected and how on hindsight we wished we approached them.   More specifically we will discuss the following aspects:   Overall design of the study in five phases: recruitment, teams' analyses, analyses peer-review, meta-analysis and write-up. Preparation of a Registered Report and process of getting an In Principle Acceptance prior to the beginning of the first phase (recruitment). Preparation and management of a project-wide OSF repository using the R package osfr, and integration with GitHub. Logistics of recruitment and team creation with social media, Eventbrite and Google Sheets. Development of questionnaires to gather background information on the recruited analysts and to collect reports on the the teams' analyses. General project management with GitHub projects, issues and GitHub actions.
随着近年来以“许多分析师”项目形式的大型科学合作项目的增加,研究项目管理已迅速从中小型协调转向大规模规划。项目协调人面临着前所未有的挑战,这使得“许多分析师”项目耗时耗力。通过这张海报,我们想分享我们管理正在进行的多语音分析项目(https://many-speech-analyses.github.io)的经验,并提供建议和物流解决方案,以尽量减少此类项目所需的资源开销。我们还将讨论过程中的哪些步骤没有按照预期进行,以及事后我们希望如何解决这些问题。更具体地说,我们将讨论以下方面:研究的总体设计分为五个阶段:招聘,团队分析,分析同行评审,元分析和书面报告。在第一阶段(招聘)开始之前,准备注册报告和获得原则上接受的过程。使用R包osfr准备和管理项目范围的OSF存储库,并与GitHub集成。通过社交媒体、Eventbrite和Google Sheets进行招聘和团队创建的后勤工作。编制调查问卷,收集有关所聘分析员的背景资料,并收集有关各小组分析的报告。一般项目管理与GitHub项目,问题和GitHub的行动。
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引用次数: 0
How Does Open Research Impact Student Outcomes? A Big Team Science Review and Evidence Synthesis 开放研究如何影响学生的学习成绩?大团队科学评论和证据综合
Pub Date : 2022-07-26 DOI: 10.2218/eorc.2022.7001
Madeleine Pownall
In this talk, I will provide a summary of a large-scale review of how embedding open and reproducible scholarship may impact student outcomes across educational contexts. This project aimed to reduce barriers to embed open and reproducible scholarship into research training, by reviewing, synthesising, and clearly articulating how embedding such an approach can confer benefits for students. We provide the first comprehensive review of how integrating open and reproducible science into teaching and learning impacts students, using a large-scale, collaborative, Big Team Science approach. This project focused on interdisciplinary undergraduate and postgraduate students, on an international level. In the talk, I will describe the key findings of the review and also reflect upon the value of employing Big Team Science approaches to the study of open pedagogy.
在这次演讲中,我将提供一个关于在教育背景下嵌入开放和可复制的奖学金如何影响学生成绩的大规模回顾的总结。该项目旨在通过审查、综合和清楚地阐明嵌入这种方法如何为学生带来好处,减少将开放和可复制的学术融入研究培训的障碍。我们提供了第一个全面的审查,如何将开放和可复制的科学融入教学和学习影响学生,使用大规模,协作,大团队科学方法。该项目主要面向国际水平的跨学科本科生和研究生。在演讲中,我将描述综述的主要发现,并反思采用大团队科学方法研究开放教学法的价值。
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引用次数: 0
FAIRification as a Team Sport 成为一项团队运动
Pub Date : 2022-07-26 DOI: 10.2218/eorc.2022.7006
Susanna-Assunta Sansone
The FAIR Principles have succeeded to unit stakeholders world-wide behind a common concept: good data management under common standards. However, putting FAIR into practice is still work in progress and it "takes a village".   I will provide an overview of two community-driven resources, the FAIRsharing (https://fairsharing.org) and the FAIR Cookbook (https://faircookbook.elixir-europe.org), as examples of what we need to turn FAIR into reality. Both resources will also contribute to the UKRN ecosystem.
公平原则成功地将世界各地的利益相关者团结在一个共同的概念背后:在共同标准下进行良好的数据管理。然而,将公平付诸实践仍在进行中,它“需要一个村庄”。我将提供两个社区驱动资源的概述,FAIRsharing (https://fairsharing.org)和FAIR Cookbook (https://faircookbook.elixir-europe.org),作为我们需要将FAIR变为现实的例子。这两种资源也将为UKRN生态系统做出贡献。
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引用次数: 0
tidyqpcr
Pub Date : 2022-07-26 DOI: 10.2218/eorc.2022.7008
Samuel Haynes, Edward W. J. Wallace
Software is intended to be a tool used to complete tasks efficiently. However, the intent is not always matched by the execution as users may become frustrated with design idiosyncrasies or suboptimal implementations. In order to support reproducibility and the user experience, research software needs to be rewarded on its usability and documentation as well as  its functionality. Quality documentation needs to cover design decisions, functionality, and how to contribute to the software. Here we describe our work to tackle the reproducibility crisis in qPCR analysis by creating the open-source software package tidyqpcr. We also introduced the extensive infrastructure available for creating software documentation in the R programming language.  Quantitative polymerase chain reaction (qPCR) is a fundamental technique in molecular biology to detect and quantify DNA and RNA. However, the ubiquitous use of qPCR across research disciplines has led to inconsistencies in implementation and reporting, leading to a reproducibility crisis and the publication of the Minimum Information in a Quantitative PCR experiment (MIQE) guidelines. In addition, each stage of a qPCR experiment can be customised to extract a wide variety of information from numerous biological processes. Developing versatile and reliable software built with best-practices and thorough documentation would promote reproducible qPCR analysis across diverse disciplines. tidyqpcr is an open source software package for user-friendly qPCR analysis using the tidyverse suite of R packages. tidyqpcr offers a consistent user interface and structure for qPCR analysis, within the tidyverse paradigm of spreadsheet-like rectangular data frames and generic functions that build up complex analyses in a series of simple steps. tidyqpcr focuses on experimental design in microwell plates, and relative quantification using changes in quantification cycle (∆Cq). tidyqpcr has been improved in response to software review from the rOpenSci non-profit initiative, which co-ordinates with the Journal of Open Source Software. Overall, tidyqpcr empowers scientists to conduct reproducible, flexible, and best-practice compliant quantitative PCR analysis.
软件是用来有效地完成任务的工具。然而,意图并不总是与执行相匹配,因为用户可能会对设计特性或次优实现感到沮丧。为了支持可重复性和用户体验,研究软件需要在其可用性和文档以及功能上得到奖励。高质量的文档需要涵盖设计决策、功能以及如何对软件做出贡献。在这里,我们通过创建开源软件包tidyqpcr来描述我们的工作,以解决qPCR分析中的可重复性危机。我们还介绍了可用于用R编程语言创建软件文档的广泛基础结构。定量聚合酶链反应(qPCR)是分子生物学中检测和定量DNA和RNA的一项基本技术。然而,qPCR在各个研究学科中的普遍使用导致了实施和报告的不一致性,导致了可重复性危机和定量PCR实验(MIQE)指南的发布。此外,qPCR实验的每个阶段都可以定制,以从众多生物过程中提取各种各样的信息。开发具有最佳实践和完整文档的通用且可靠的软件将促进跨不同学科的可重复qPCR分析。tidyqpcr是一个开源软件包,用于用户友好的qPCR分析,使用tidyverse套件的R包。tidyqpcr为qPCR分析提供了一致的用户界面和结构,在电子表格样的矩形数据框架和通用函数范例中,通过一系列简单的步骤构建复杂的分析。tidyqpcr侧重于在微孔板上进行实验设计,并利用定量周期变化(∆Cq)进行相对定量。tidyqpcr已经得到了改进,以响应来自rOpenSci非营利倡议的软件审查,该倡议与开源软件杂志协调。总的来说,tidyqpcr使科学家能够进行可重复的,灵活的,符合最佳实践的定量PCR分析。
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引用次数: 1
Open Research in the Classroom 课堂上的开放式研究
Pub Date : 2022-07-26 DOI: 10.2218/eorc.2022.7000
Emma Wilson
Open research practices can benefit students, researchers, and the research community by improving the quality, transparency, and accessibility of research findings. Many groups such as the Edinburgh Open Research Initiative (EORI) and the Framework for Open and Reproducible Research Training (FORRT) aim to promote the integration of open research practices into university curriculums. Senior year high school pupils preparing to study STEM (Science, Technology, Engineering and Maths) of Social Sciences subjects at university will often conduct their first research project as part of an Advanced Higher course, Nuffield Research Placement, or CREST Award. We have recently received funding to develop resources aimed at introducing S4-S6 Scottish High School pupils to open research practices. Already there is keen interest from Scottish Schools Education Research Centre (SSERC), who run Nuffield Research Placements in Scotland, to make these resources available to all pupils completing placements. We are currently looking for a small group of UoE students (undergraduate or postgraduate) to assist in developing two short animation scripts on open research topics and an interactive activity. Students will be reimbursed for contributing to the project. Students should be knowledgeable on open research topics (although you don’t have to be an expert!). Science communication experience is not required, although we will encourage all student volunteers to sign up to the STEM Ambassadors programme. We are not able to use our funding to reimburse staff members, but UoE staff are more than welcome to register their interest in our project and help out with developing or assuring the quality of our resources. This project is funded by alumni and friends of the University of Edinburgh through the Student Experience Grant scheme.
通过提高研究成果的质量、透明度和可及性,开放研究实践可以使学生、研究人员和研究团体受益。爱丁堡开放研究计划(EORI)和开放和可复制研究培训框架(FORRT)等许多组织的目标是促进将开放研究实践整合到大学课程中。准备在大学学习STEM(科学,技术,工程和数学)社会科学学科的高中高年级学生通常会进行他们的第一个研究项目,作为高级高等课程,纳菲尔德研究实习或CREST奖的一部分。我们最近收到了一笔资金,用于开发资源,旨在向苏格兰高中S4-S6年级的学生介绍开放式研究实践。负责苏格兰纳菲尔德研究实习的苏格兰学校教育研究中心(SSERC)已经对将这些资源提供给所有完成实习的学生产生了浓厚的兴趣。我们目前正在寻找一小群UoE学生(本科生或研究生),以协助开发两个关于开放研究主题的动画短片脚本和一个互动活动。学生对项目的贡献将得到补偿。学生应该对公开的研究课题有所了解(尽管你不必成为专家!)虽然我们鼓励所有学生志愿者报名参加STEM大使计划,但不需要有科学传播经验。我们不能用我们的资金来偿还员工,但UoE员工非常欢迎他们对我们的项目感兴趣,并帮助开发或确保我们资源的质量。该项目由爱丁堡大学的校友和朋友通过学生体验资助计划资助。
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引用次数: 0
Open Science in Experimental Autism Research: A Replication Study of Information Transfer Within and Between Autistic and Non-Autistic People 开放科学在自闭症实验研究中的应用:自闭症与非自闭症人群内部和之间信息传递的复制研究
Pub Date : 2022-07-26 DOI: 10.2218/eorc.2022.6940
Catherine J. Crompton, D. Ropar, N. Sasson, M. Lages, S. Fletcher‐Watson
Information sharing depends on successful communication. Because autism is clinically defined by social communication deficits, autistic people may be expected to be less effective at sharing information, particularly with one another.  In 2020, we published a paper indicating that it is the mismatch between autistic and non-autistic people, rather than autism itself, that degrades information sharing. We used an experimental diffusion chain methodology to examine information transfer in groups of autistic people, groups of non-autistic people, and mixed groups of autistic and non-autistic people. The first participant in each group was told a story which they recounted to a second participant, who recounted it to the third participant and so on, along a “diffusion chain” of eight participants (n = 72). Retention of details within the mixed chain showed a significantly steeper decline than the autistic and mixed chains, which did not significantly differ from each other.  These results challenge the diagnostic criterion of inherent social deficits in autism, demonstrate that autistic social behaviour can include effective communication and social interaction, and suggest that social difficulties in autism are contextual rather than absolute. Although these findings have profound implications for practitioners, educators, clinicians and psychologists, pushing for dramatic change in policy and practice is premature without a replication establishing these effects as robust and meaningful. Importantly, a failure to replicate would still yield novel insights into interactions between autistic and non-autistic people that could be applied to practice across services.  We are embarking on an open-science replication of this study in a larger (n = 324) and more diverse sample, across three international sites, to determine whether these findings are replicable in new samples. We hypothesise that we will replicate the original finding, showing that social interactions are facilitated in an autistic group of participants.  Our increased sample size will allow for the identification of moderating demographic factors, and potential communicative mechanisms that facilitate or impede interaction between and within diagnostic groups. Additionally, we will explore whether informing participants of the diagnostic status of participants in their chain affects information transfer and rapport, and whether transfer differs for fictional and factual information.  This study was funded as part of an Open Science Initiative; our protocols will be pre-registered on the Open Science Framework, and we have a Registered Report currently under review. It is the first Open Science endeavour of this team, and we look forward to the opportunity to discuss this work with the Edinburgh Open Science community. We will present a short summary of the results from the first study and a detailed account of the planned replication, drawn from our Registered Report (currently unde
信息共享取决于成功的沟通。因为孤独症在临床上被定义为社会沟通缺陷,所以孤独症患者可能在分享信息方面效率较低,尤其是与他人之间。2020年,我们发表了一篇论文,指出是自闭症患者和非自闭症患者之间的不匹配,而不是自闭症本身,降低了信息共享。我们使用了一种实验扩散链方法来研究自闭症人群、非自闭症人群以及自闭症和非自闭症人群混合群体中的信息传递。每组的第一名参与者都被告知一个故事,他们将这个故事讲述给第二名参与者,第二名参与者再将这个故事讲述给第三名参与者,以此类推,形成一条由8名参与者组成的“传播链”(n = 72)。混合链内细节保留的下降幅度明显大于自闭链和混合链,两者之间无显著差异。这些结果挑战了自闭症固有社会缺陷的诊断标准,表明自闭症的社会行为可以包括有效的沟通和社会互动,并表明自闭症的社会困难是情境性的,而不是绝对的。尽管这些发现对从业人员、教育工作者、临床医生和心理学家具有深远的影响,但在没有重复证明这些影响是强有力和有意义的情况下,推动政策和实践的巨大变化还为时过早。重要的是,复制失败仍然会对自闭症患者和非自闭症患者之间的相互作用产生新的见解,这些见解可以应用于跨服务的实践。我们正着手在三个国际站点的更大(n = 324)和更多样化的样本中进行这项研究的开放科学复制,以确定这些发现是否可在新样本中复制。我们假设我们将复制最初的发现,表明自闭症参与者群体的社会互动更容易。我们增加的样本量将允许确定适度的人口因素,以及促进或阻碍诊断组之间和组内互动的潜在沟通机制。此外,我们将探讨告知参与者其链中参与者的诊断状态是否会影响信息传递和融洽,以及虚构和真实信息的传递是否不同。这项研究是作为开放科学倡议的一部分资助的;我们的协议将在开放科学框架上预先注册,我们目前正在审查一份注册报告。这是该团队的第一个开放科学项目,我们期待有机会与爱丁堡开放科学社区讨论这项工作。我们将简要总结第一项研究的结果,并详细介绍计划复制的情况,这些内容摘自我们的注册报告(目前正在《自然-人类行为》杂志上进行审查)。
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引用次数: 1
Open Access, Data Management and Emerging Challenges to International Research 开放存取,数据管理和国际研究的新挑战
Pub Date : 2022-07-26 DOI: 10.2218/eorc.2022.7337
G. McLachlan
The University of Edinburgh’s current position regarding Open Access and Data management – including the introduction of our new policies. As well as the University’s general approach to supporting Open Research and Open Science. Then give his view on the emerging challenges regarding international research, especially the increased administrative research burden and restrictions on the free use of international research data caused by recent legislation and pending legislation (such as the National Security Investment Act) as well as continued effects from BREXIT. Finally covering his recent discussions and work with our new UK Information Commissioner as well as the Scottish government on these subjects.
爱丁堡大学目前关于开放获取和数据管理的立场-包括我们新政策的引入。以及大学支持开放研究和开放科学的一般方法。然后,他对国际研究面临的新挑战发表了自己的看法,特别是最近立法和即将立法(如《国家安全投资法》)造成的行政研究负担增加,国际研究数据的自由使用受到限制,以及英国退欧的持续影响。最后介绍了他最近的讨论,并与我们的新英国信息专员以及苏格兰政府就这些问题进行了合作。
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引用次数: 0
Scottish Universities Open Access Press 苏格兰大学开放获取出版社
Pub Date : 2022-07-26 DOI: 10.2218/eorc.2022.6967
Dominique Walker
18 academic libraries across Scotland, through SCURL (Scottish Confederation of University and Research Libraries), are collaborating to develop a not-for-profit open access publishing platform that is owned and managed by the participating libraries.  The aim of the Scottish Universities Open Access Press (SUOAP) is to provide a straightforward and cost-effective OA publication route for academics across Scottish HEIs, in response to changes in funder policies and Plan S. By publishing research open access, the SUOAP aims to raise the global visibility and usage of research at Scottish HEIs, increasing the high impact of Scottish HEI research outputs across all disciplines. In this talk, Dominique Walker, the Publishing Officer for SUOAP, will set out the background to the project, discussing how SCURL’s experience of delivering cooperative developments for Scottish HEIs provided the foundation and the framework for creating a collaborative OA press. It will also look at where the development of the Press has reached so far, with the establishment of an online platform and formation of a diverse Editorial Board constituting academics from across the 18 institutions. It will also discuss the next steps, including plans to open a call for monograph proposals. Overall the talk aims to show how Libraries and HEIs can work together to provide open access to research, providing alternative routes for publication and delivering a mutually beneficial outcome for the sector in Scotland.
通过苏格兰大学和研究型图书馆联合会(SCURL),苏格兰的18家学术图书馆正在合作开发一个非盈利的开放获取出版平台,该平台由参与的图书馆拥有和管理。苏格兰大学开放获取出版社(SUOAP)的目标是为苏格兰高等院校的学者提供一个直接和具有成本效益的开放获取出版途径,以响应资助者政策和s计划的变化。通过出版研究开放获取,SUOAP旨在提高苏格兰高等院校研究的全球知名度和使用率,增加苏格兰高等院校研究成果在所有学科的高影响力。在本次演讲中,SUOAP的出版官员Dominique Walker将阐述该项目的背景,讨论SCURL为苏格兰高等教育机构提供合作开发的经验如何为创建协作式OA出版社提供基础和框架。它还将研究新闻界的发展到目前为止取得了什么成就,建立了一个在线平台,并组建了一个由来自18个机构的学者组成的多元化编辑委员会。它还将讨论接下来的步骤,包括开放专题论文征集的计划。总的来说,这次演讲的目的是展示图书馆和高等教育机构如何共同努力,提供对研究的开放获取,为出版提供替代途径,并为苏格兰的部门提供互利的结果。
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引用次数: 0
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Edinburgh Open Research
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