Pub Date : 2012-08-15DOI: 10.1007/978-3-642-31927-3_16
Kary A. C. S. Ocaña, Daniel de Oliveira, Felipe Horta, Jonas Dias, Eduardo S. Ogasawara, M. Mattoso
{"title":"Exploring Molecular Evolution Reconstruction Using a Parallel Cloud Based Scientific Workflow","authors":"Kary A. C. S. Ocaña, Daniel de Oliveira, Felipe Horta, Jonas Dias, Eduardo S. Ogasawara, M. Mattoso","doi":"10.1007/978-3-642-31927-3_16","DOIUrl":"https://doi.org/10.1007/978-3-642-31927-3_16","url":null,"abstract":"","PeriodicalId":249082,"journal":{"name":"Brazilian Symposium on Bioinformatics","volume":"20 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2012-08-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"127282897","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2012-08-15DOI: 10.1007/978-3-642-31927-3_4
A. Matroud, C. Tuffley, D. Bryant, M. Hendy
{"title":"A Comparison of Three Heuristic Methods for Solving the Parsing Problem for Tandem Repeats","authors":"A. Matroud, C. Tuffley, D. Bryant, M. Hendy","doi":"10.1007/978-3-642-31927-3_4","DOIUrl":"https://doi.org/10.1007/978-3-642-31927-3_4","url":null,"abstract":"","PeriodicalId":249082,"journal":{"name":"Brazilian Symposium on Bioinformatics","volume":"3 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2012-08-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"121339054","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2012-08-15DOI: 10.1007/978-3-642-31927-3_5
R. Lorenz, S. Bernhart, Fabian Externbrink, Jing Qin, C. H. Z. Siederdissen, F. Amman, I. Hofacker, P. Stadler
{"title":"RNA Folding Algorithms with G-Quadruplexes","authors":"R. Lorenz, S. Bernhart, Fabian Externbrink, Jing Qin, C. H. Z. Siederdissen, F. Amman, I. Hofacker, P. Stadler","doi":"10.1007/978-3-642-31927-3_5","DOIUrl":"https://doi.org/10.1007/978-3-642-31927-3_5","url":null,"abstract":"","PeriodicalId":249082,"journal":{"name":"Brazilian Symposium on Bioinformatics","volume":"140 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2012-08-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"114891287","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2012-08-15DOI: 10.1007/978-3-642-31927-3_3
Gustavo Rodrigues Galvão, Zanoni Dias
{"title":"On the Approximation Ratio of Algorithms for Sorting by Transpositions without Using Cycle Graphs","authors":"Gustavo Rodrigues Galvão, Zanoni Dias","doi":"10.1007/978-3-642-31927-3_3","DOIUrl":"https://doi.org/10.1007/978-3-642-31927-3_3","url":null,"abstract":"","PeriodicalId":249082,"journal":{"name":"Brazilian Symposium on Bioinformatics","volume":"51 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2012-08-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123836175","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2012-08-15DOI: 10.1007/978-3-642-31927-3_7
Halian Vilela, Tainá Raiol, A. Maranhão, M. E. Walter, M. Brigido
{"title":"A Bioconductor Based Workflow for Z-DNA Region Detection and Biological Inference","authors":"Halian Vilela, Tainá Raiol, A. Maranhão, M. E. Walter, M. Brigido","doi":"10.1007/978-3-642-31927-3_7","DOIUrl":"https://doi.org/10.1007/978-3-642-31927-3_7","url":null,"abstract":"","PeriodicalId":249082,"journal":{"name":"Brazilian Symposium on Bioinformatics","volume":"70 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2012-08-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"125534877","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2012-08-15DOI: 10.1007/978-3-642-31927-3_11
P. Jaskowiak, R. Campello, Ivan G. Costa
{"title":"Evaluating Correlation Coefficients for Clustering Gene Expression Profiles of Cancer","authors":"P. Jaskowiak, R. Campello, Ivan G. Costa","doi":"10.1007/978-3-642-31927-3_11","DOIUrl":"https://doi.org/10.1007/978-3-642-31927-3_11","url":null,"abstract":"","PeriodicalId":249082,"journal":{"name":"Brazilian Symposium on Bioinformatics","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2012-08-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129304579","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2012-08-15DOI: 10.1007/978-3-642-31927-3_14
Ana T. Winck, C. Quevedo, K. Machado, O. N. Souza, D. Ruiz
{"title":"A Comparative Analysis of Public Ligand Databases Based on Molecular Descriptors","authors":"Ana T. Winck, C. Quevedo, K. Machado, O. N. Souza, D. Ruiz","doi":"10.1007/978-3-642-31927-3_14","DOIUrl":"https://doi.org/10.1007/978-3-642-31927-3_14","url":null,"abstract":"","PeriodicalId":249082,"journal":{"name":"Brazilian Symposium on Bioinformatics","volume":"49 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2012-08-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123027829","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2012-08-15DOI: 10.1007/978-3-642-31927-3_12
Rogério S. Rosa, Rafael H. S. Santos, K. Guimaraes
{"title":"Associating Genotype Sequence Properties to Haplotype Inference Errors","authors":"Rogério S. Rosa, Rafael H. S. Santos, K. Guimaraes","doi":"10.1007/978-3-642-31927-3_12","DOIUrl":"https://doi.org/10.1007/978-3-642-31927-3_12","url":null,"abstract":"","PeriodicalId":249082,"journal":{"name":"Brazilian Symposium on Bioinformatics","volume":"48 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2012-08-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"127955731","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2012-08-15DOI: 10.1007/978-3-642-31927-3_10
E. Gusmão, C. Dieterich, Ivan G. Costa
{"title":"Prediction of Transcription Factor Binding Sites by Integrating DNase Digestion and Histone Modification","authors":"E. Gusmão, C. Dieterich, Ivan G. Costa","doi":"10.1007/978-3-642-31927-3_10","DOIUrl":"https://doi.org/10.1007/978-3-642-31927-3_10","url":null,"abstract":"","PeriodicalId":249082,"journal":{"name":"Brazilian Symposium on Bioinformatics","volume":"24 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2012-08-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115718155","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2012-08-15DOI: 10.1007/978-3-642-31927-3_13
Sérgio Lifschitz, C. J. Viana, Cristian Tristão, M. Catanho, W. Degrave, A. B. Miranda, Márcia Bezerra, T. Otto
{"title":"Design and Implementation of ProteinWorldDB","authors":"Sérgio Lifschitz, C. J. Viana, Cristian Tristão, M. Catanho, W. Degrave, A. B. Miranda, Márcia Bezerra, T. Otto","doi":"10.1007/978-3-642-31927-3_13","DOIUrl":"https://doi.org/10.1007/978-3-642-31927-3_13","url":null,"abstract":"","PeriodicalId":249082,"journal":{"name":"Brazilian Symposium on Bioinformatics","volume":"15 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2012-08-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128747342","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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