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Screening of one-bead one-compound cyclic peptide libraries using unpurified proteins from the wheat germ cell-free system to identify protein-protein interaction inhibitors 利用小麦无生殖细胞系统中未纯化的蛋白筛选单头单化合物环肽文库以鉴定蛋白质相互作用抑制剂。
IF 3 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-21 DOI: 10.1016/j.bmc.2025.118492
Miki Hasegawa , Akira Nozawa , Yoshihito Tanaka , Kohki Kido , Shinichi Terawaki , Chikako Takahashi , Yasumasa Matsumoto , Yuichi Onda , Kouhei Tanaka , Taro Kishimoto , Hiroshi Sato , Akihiro Takemiya , Tatsuya Sawasaki
Protein-protein interactions (PPIs) are recognized as both attractive and challenging therapeutic targets. Cyclic peptides are particularly well-suited for PPI inhibition due to their ability to effectively interfere with the extensive surface areas involved in these interactions. One-Bead One-Compound (OBOC) libraries have been widely utilized in affinity-based on-bead screening approaches to identify cyclic peptides targeting PPIs. However, a major bottleneck in OBOC library screening is the requirement for purified proteins to ensure screening accuracy. In this study, we present a novel screening platform that integrates an OBOC cyclic peptide library with crude bait proteins produced using a wheat germ cell-free system, eliminating the need for a purification step. This approach facilitates drug discovery for biologically relevant target proteins and those that are difficult to purify. To demonstrate the effectiveness of this method, we selected the p53-murine double minute 2 (MDM2) interaction as a model target and performed a large-scale on-bead binding assay using MDM2. The primary hits identified through this screening exhibited PPI inhibitory activity in the AlphaScreen assay, and docking simulations further verified their binding mode to MDM2. This method offers an efficient strategy for screening cyclic peptides against challenging drug targets, expanding opportunities for PPI-targeted drug discovery.
蛋白-蛋白相互作用(PPIs)被认为是既具有吸引力又具有挑战性的治疗靶点。环肽特别适合于PPI抑制,因为它们能够有效地干扰这些相互作用中涉及的广泛表面积。One-Bead - One-Compound (OBOC)文库已广泛应用于基于亲和的靶向PPIs的环肽筛选方法中。然而,OBOC文库筛选的主要瓶颈是对纯化蛋白的要求,以确保筛选的准确性。在这项研究中,我们提出了一种新的筛选平台,该平台将OBOC环肽库与小麦无生殖细胞系统产生的粗诱饵蛋白相结合,从而省去了纯化步骤。这种方法促进了生物相关靶蛋白和难以纯化的靶蛋白的药物发现。为了证明该方法的有效性,我们选择p53-小鼠双分钟2 (MDM2)相互作用作为模型靶点,并使用MDM2进行了大规模的头上结合实验。通过筛选确定的主要hit在alphasgreen实验中显示出PPI抑制活性,对接模拟进一步验证了它们与MDM2的结合模式。这种方法提供了一种有效的筛选环肽对抗挑战性药物靶点的策略,扩大了ppi靶向药物发现的机会。
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引用次数: 0
Polynitrogen-containing compounds as multi-target sEH/FAAH inhibitors: Structure-activity relationship and pharmacological studies 多含氮化合物作为多靶点sEH/FAAH抑制剂:构效关系及药理研究。
IF 3 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-20 DOI: 10.1016/j.bmc.2025.118495
Amanda Tsang , Cassandra Yuan , Manuel Berumen , Leah Duong , Karen Gomez , Shelby Seely , Alex Salgado , Adim Rai , Jo Vistosa , Edith Morales Munoz , Marcos E. Ortega , Christophe Morisseau , Bruce D. Hammock , Jake E. Zuckerman , Joseph Yount , Davin G. Piercey , Ram Kandasamy , Stevan Pecic
Both soluble epoxide hydrolase (sEH) and fatty acid amide hydrolase (FAAH) are involved in degradation of anti-inflammatory and antinociceptive lipids, thus inhibition of these enzymatic pathways represents a novel strategy in the discovery of non-opioid drugs for treating inflammatory pain. We previously discovered several multi-targeted designed ligands and described a pharmacophore necessary for inhibition of both sEH and FAAH. The potential for optimization on the left side of the pharmacophore led us to exploration of different heterocyclic moieties with the hope to keep strong inhibition potencies, but to increase the metabolic stability and solubility of new analogs. Eighteen analogs containing various substituted and unsubstituted pyrimidinyl-, quinoxalinyl- and tetrazolyl- rings are synthesized and tested for inhibition potency in human FAAH, and human, rat and mouse sEH. The structure-activity relationship study revealed quinoxalinyl- analog 4 m, the most potent dual inhibitor reported to date, with IC50 values of 2.9 nM in human FAAH and 0.7 nM, 39.1 nM and 0.3 nM in human, mouse and rat sEH, respectively. 4 m showed no binding to opioid and most serotonin receptors and was tested in the human, mouse and rat liver microsomes stability assays where it exhibited good and/or moderate clearance rates. Lastly, we evaluated 4 m in vivo in a wheel running assay to determine its effects on voluntary locomotor behavior. Both 4 m and the traditional opioid morphine exhibited significant depression of wheel running after intraperitoneal administration indicating that 4 m may produce undesirable behavioral effects, which will be the basis for future studies.
可溶性环氧化物水解酶(sEH)和脂肪酸酰胺水解酶(FAAH)都参与抗炎和抗疼痛脂质降解,因此抑制这些酶途径代表了发现治疗炎症性疼痛的非阿片类药物的新策略。我们之前发现了几个多靶向设计的配体,并描述了抑制sEH和FAAH所必需的药效团。左侧药效团的优化潜力促使我们探索不同的杂环部分,希望在保持强抑制效力的同时,增加新的类似物的代谢稳定性和溶解度。合成了18种含有不同取代和未取代嘧啶环、喹啉环和四唑基环的类似物,并测试了它们对人FAAH、人、大鼠和小鼠sEH的抑制能力。结构-活性关系研究显示,喹诺沙林基类似物4 m是迄今为止报道的最有效的双抑制剂,其在人FAAH中的IC50值为2.9 nM,在人、小鼠和大鼠sEH中的IC50值分别为0.7 nM、39.1 nM和0.3 nM。4 m显示不与阿片样物质和大多数5 -羟色胺受体结合,并在人、小鼠和大鼠肝微粒体稳定性试验中进行了测试,显示出良好和/或中等的清除率。最后,我们在轮式跑步实验中评估了体内4米,以确定其对自主运动行为的影响。4 m与传统阿片类吗啡腹腔内给药后均表现出明显的轮跑抑制作用,提示4 m可能产生不良的行为效应,这将为今后的研究奠定基础。
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引用次数: 0
Repurposing the USFDA-approved small molecules for their affinity against the colchicine binding site (CBS) in the tubulin: Corroborating the in-silico findings through biological assessment 重新利用fda批准的小分子对微管蛋白中秋水仙碱结合位点(CBS)的亲和力:通过生物学评估证实了计算机上的发现。
IF 3 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-20 DOI: 10.1016/j.bmc.2025.118488
Kumar Rohit, Bibekananda Sarkar
The microtubules are known to possess inimitable characteristics termed ‘exquisite dynamic behavior,’ which allows cells to maintain their shape and assist in cellular division. This exquisite dynamicity is lost in the case of cancer, and considering their pivotal role, they are considered as central drug targets in cancer chemotherapy. To target them, microtubule-targeting agents (MTAs) are unique small molecules that inhibit one of the seven unique druggable pockets of microtubules, impacting their dynamicity and leading to cell cycle arrest and apoptosis. In the present work, we employ a drug repurposing strategy to identify plausible leads targeting the colchicine binding site (CBS) from a pool of 2787 FDA-approved drugs. CBS is a unique and flexible druggable pocket site in microtubules that has been targeted for both cancer and non-cancer diseases. Additionally, the inhibition of this site is reported to reverse drug resistance and exhibit synergistic anti-inflammatory and anti-angiogenic properties, further enhancing the anticancer effects. The cumulative analysis led to the identification of Tafenoquine, a well-known antimalarial FDA-approved molecule, as a potential tubulin-targeting agent with predicted binding to the colchicine site. The in-silico analysis was further corroborated using in vitro investigation on breast (MCF-7 and MDA-MB-231), lung (A549), and colon (HCT-116) cancer cells. Tafenoquine was found to exert broad-spectrum antiproliferative effects, with greatest potency against MDA-MB-231 cells (IC₅₀ = 4.75 ± 0.18 μM), a model for aggressive and treatment-resistant triple-negative breast cancer (TNBC). Considering the tubulin polymerization assay, the identified hit was found to inhibit microtubule assembly (low Vmax) in a manner similar to colchicine, and exhibited a similar G2/M arrest, indicating a mode of inhibition similar to that of colchicine.
众所周知,微管具有被称为“精致动态行为”的独特特征,它允许细胞保持其形状并协助细胞分裂。这种微妙的动态在癌症的情况下失去了,考虑到它们的关键作用,它们被认为是癌症化疗的中心药物靶点。针对它们,微管靶向药物(mta)是一种独特的小分子,可以抑制7种独特的可药物微管口袋之一,影响其动力学并导致细胞周期阻滞和凋亡。在目前的工作中,我们采用了一种药物再利用策略,从2787种fda批准的药物中找出针对秋水仙碱结合位点(CBS)的合理线索。CBS是微管中独特而灵活的可药物口袋位点,已成为癌症和非癌症疾病的目标。此外,据报道,抑制该位点可以逆转耐药性,并表现出协同抗炎和抗血管生成特性,进一步增强抗癌作用。累积分析确定了Tafenoquine,这是一种著名的抗疟疾分子,已被fda批准,作为一种潜在的微管蛋白靶向剂,可以与秋水仙碱位点结合。通过对乳腺癌(MCF-7和MDA-MB-231)、肺癌(A549)和结肠癌(HCT-116)细胞的体外研究,进一步证实了计算机分析的结果。发现他非诺喹具有广谱抗增殖作用,对MDA-MB-231细胞(IC₅₀= 4.75±0.18 μM)的效力最大,这是一种侵袭性和治疗抵抗性三阴性乳腺癌(TNBC)的模型。考虑到微管蛋白聚合实验,鉴定的hit被发现以类似于秋水仙碱的方式抑制微管组装(低Vmax),并表现出类似的G2/M阻滞,表明抑制模式类似于秋水仙碱。
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引用次数: 0
FPhotocleavable PROTACs as tools for dynamic regulation of protein function 光可切割的PROTACs作为动态调节蛋白质功能的工具。
IF 3 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-19 DOI: 10.1016/j.bmc.2025.118491
Hanqiao Xu , Hidetomo Yokoo , Yosuke Demizu
Proteolysis-targeting chimeras (PROTACs) have emerged as valuable tools for targeted protein degradation. However, conventional designs generally lack mechanisms for temporal regulation. In this study, we explored photocleavable PROTACs incorporating a nitrobenzyl linker, aiming to achieve light-triggered inactivation of BET protein degradation. Docking simulations indicated that the linker did not disrupt the formation of the ternary complex, and LC–MS/MS analyses indicated that photocleavage occurred rapidly within cells. Cellular experiments demonstrated that the compounds promoted efficient degradation of the BET protein at low concentrations, and recovery assays with UV irradiation indicated that protein expression could be restored after transient depletion. These results suggest that photocleavable PROTACs offer a practical approach to controlling degradation with temporal precision and may provide useful chemical biology tools for investigating the dynamic functions of BET proteins.
靶向蛋白水解嵌合体(Proteolysis-targeting chimeras, PROTACs)已成为靶向蛋白降解的重要工具。然而,传统的设计通常缺乏时间调节机制。在这项研究中,我们探索了含有硝基苯连接剂的光可切割PROTACs,旨在实现光触发BET蛋白降解的失活。对接模拟表明,连接子不会破坏三元配合物的形成,LC-MS/MS分析表明,细胞内的光裂解发生迅速。细胞实验表明,这些化合物在低浓度下促进了BET蛋白的有效降解,紫外线照射下的恢复实验表明,在短暂耗尽后,蛋白质的表达可以恢复。这些结果表明,光可切割的PROTACs提供了一种具有时间精度的控制降解的实用方法,并可能为研究BET蛋白的动态功能提供有用的化学生物学工具。
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引用次数: 0
Versatile fluorescent homobifunctional crosslinkers: expedient synthesis and application to di-affibody constructs for specific HER2+ cancer cell recognition 多功能荧光同源双功能交联剂:方便的合成和应用于特异性HER2+癌细胞识别的二粘附体结构
IF 3 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-19 DOI: 10.1016/j.bmc.2025.118494
Eric Kaya, Fabienne Fasani, Carlo Pifferi, Catherine Grillon, Vincent Aucagne, Josef Hamacek
In this contribution we report on the design of new versatile fluorescent linkers (L1L3, L1N) suitable for the covalent assembly of specific recognition motifs to bind biologically relevant targets such as HER2 receptors. The central fluorescent molecular platform emits in red and represents a key building block for the synthesis of conjugates and their subsequent analyses. The presence of amino groups enables straightforward functionalization with bifunctional PEG linkers (NHS, MI) of variable length for further directional bioconjugation. To demonstrate the value of this approach, the linkers were conjugated with chemically synthesized affibodies (AfB, ZHER2:2891(M9Nle/D37E)), bearing a unique cysteine at N-terminal or C-terminal end. Indeed, this AfB binds the human epidermal growth factor receptor 2 (HER2), which is often overexpressed in different carcinomas, and it is therefore considered as a tumour marker in bioimaging and drug delivery systems. Seven AfB conjugates—three mono-AfBs (N1, N1N, C1) and four di-AfBs (N2, N3, C2, C3)—were obtained through MI-thiol conjugation. The binding of fluorescent mono- and di-affibody (AfB) constructs was evaluated using flow cytometry to demonstrate their ability to interact with the HER2-expressing SKOV3 cells in relation with their structural properties. All tested conjugates specifically bound to HER2 receptors present on SKOV3 cells with nanomolar affinities, and only small differences between constructs were detected. The presence of our fluorescent conjugates bound to the cell surface was visualized using confocal microscopy. In addition, the internalization mechanism of AfB constructs in SKOV3 cells was investigated due to the measurement of their fluorescence following trypsin treatment. In conclusion, our innovative synthetic approach with the integration of a versatile fluorescent platform offers new perspectives for monitoring molecular therapeutics inside cell and for tuning multivalent conjugates for cancer immunotherapy.
在这篇贡献中,我们报告了新的多功能荧光连接体(L1−L3, L1N)的设计,适合于特定识别基元的共价组装,以结合生物学相关靶标,如HER2受体。中央荧光分子平台发出红色,代表了共轭物合成及其后续分析的关键构建块。氨基的存在使得可变长度的双功能PEG连接物(NHS, MI)能够直接功能化,从而进一步进行定向生物偶联。为了证明这种方法的价值,将连接物与化学合成的粘附体(AfB, zh2:2891(M9Nle/D37E))偶联,在n端或c端具有独特的半胱氨酸。事实上,这种AfB结合人表皮生长因子受体2 (HER2), HER2在不同的癌症中经常过表达,因此它被认为是生物成像和药物输送系统中的肿瘤标志物。通过mi -硫醇偶联得到7个AfB偶联物,包括3个单AfB (N1, N1N, C1)和4个双AfB (N2, N3, C2, C3)。利用流式细胞术评估了荧光单和双粘附体(AfB)结构的结合,以证明它们与表达her2的SKOV3细胞相互作用的能力及其结构特性。所有测试的偶联物都以纳米摩尔亲和力特异性结合SKOV3细胞上的HER2受体,并且仅检测到构建物之间的微小差异。我们的荧光偶联物结合到细胞表面的存在是可视化使用共聚焦显微镜。此外,通过测量胰蛋白酶处理后SKOV3细胞的荧光,研究了AfB构建物在SKOV3细胞中的内化机制。总之,我们的创新合成方法与多功能荧光平台的整合为监测细胞内的分子治疗和调节癌症免疫治疗的多价偶联物提供了新的视角。
{"title":"Versatile fluorescent homobifunctional crosslinkers: expedient synthesis and application to di-affibody constructs for specific HER2+ cancer cell recognition","authors":"Eric Kaya,&nbsp;Fabienne Fasani,&nbsp;Carlo Pifferi,&nbsp;Catherine Grillon,&nbsp;Vincent Aucagne,&nbsp;Josef Hamacek","doi":"10.1016/j.bmc.2025.118494","DOIUrl":"10.1016/j.bmc.2025.118494","url":null,"abstract":"<div><div>In this contribution we report on the design of new versatile fluorescent linkers (<strong>L1</strong>−<strong>L3</strong>, <strong>L1</strong><sup><strong>N</strong></sup>) suitable for the covalent assembly of specific recognition motifs to bind biologically relevant targets such as HER2 receptors. The central fluorescent molecular platform emits in red and represents a key building block for the synthesis of conjugates and their subsequent analyses. The presence of amino groups enables straightforward functionalization with bifunctional PEG linkers (NHS, MI) of variable length for further directional bioconjugation. To demonstrate the value of this approach, the linkers were conjugated with chemically synthesized affibodies (AfB, Z<sub>HER2:2891</sub>(M9Nle/D37E)), bearing a unique cysteine at N-terminal or C-terminal end. Indeed, this AfB binds the human epidermal growth factor receptor 2 (HER2), which is often overexpressed in different carcinomas, and it is therefore considered as a tumour marker in bioimaging and drug delivery systems. Seven AfB conjugates—three mono-AfBs (<strong>N1</strong>, <strong>N1</strong><sup><strong>N</strong></sup>, <strong>C1</strong>) and four di-AfBs (<strong>N2</strong>, <strong>N3, C2, C3</strong>)—were obtained through MI-thiol conjugation. The binding of fluorescent mono- and di-affibody (AfB) constructs was evaluated using flow cytometry to demonstrate their ability to interact with the HER2-expressing SKOV3 cells in relation with their structural properties. All tested conjugates specifically bound to HER2 receptors present on SKOV3 cells with nanomolar affinities, and only small differences between constructs were detected. The presence of our fluorescent conjugates bound to the cell surface was visualized using confocal microscopy. In addition, the internalization mechanism of AfB constructs in SKOV3 cells was investigated due to the measurement of their fluorescence following trypsin treatment. In conclusion, our innovative synthetic approach with the integration of a versatile fluorescent platform offers new perspectives for monitoring molecular therapeutics inside cell and for tuning multivalent conjugates for cancer immunotherapy.</div></div>","PeriodicalId":255,"journal":{"name":"Bioorganic & Medicinal Chemistry","volume":"133 ","pages":"Article 118494"},"PeriodicalIF":3.0,"publicationDate":"2025-11-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145622401","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Investigation of the histone deacetylase inhibitor potential of phorbazole analogues 苯唑类药物组蛋白去乙酰化酶抑制剂潜力的研究
IF 3 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-19 DOI: 10.1016/j.bmc.2025.118489
Ida Amalie Nystad Reierth , Yngve Guttormsen , Jeanette H. Andersen , Espen H. Hansen , Ahmed Mossad Abdelhady , Manuel K. Langer , Bengt Erik Haug , Annette Bayer , Guillaume A. Petit
Histone deacetylases (HDACs) are enzymes that remove acyl groups from histones and other proteins. This process leads to condensation of DNA and subsequent downregulation in expression of specific genes altering the activity of essential cellular pathways and changing the cell's behaviour. As a result, HDACs have emerged as potential therapeutic targets to treat different forms of cancer. In this study we synthesized and investigated compounds built around a phorbazole scaffold to characterize their histone deacetylase inhibitor (HDACi) activity. Eighteen phorbazole analogues were tested against class I and II HDACs in cell lysate, seven showed moderate activity, of which, three had IC50 values below 50 μM. The five best candidates were evaluated more extensively against HDAC1-11 (except for HDAC10). The best candidate, compound 9, initially appeared to reduce the activity of HDAC9 and HDAC11 by more than 50 % at 10 μM concentration. The binding mode of compound 9 to HDACs was explored via computational docking, where two poses stood out. These were explored further by molecular dynamic simulation. We found that 9 likely binds HDAC9 with the pyrrole group buried in the active site and forming H-bonds with the backbone oxygen of one of the glycine residues lining the cavity. But neither of the poses explored offered convincing arguments to describe the mode of action of the phorbazole, especially when comparing 9 to other analogues tested in this study. Additional experiments found that 9 interfered with the cell lysate assays by inhibiting luciferase in a dose-dependent manner (IC50 < 1 μM) and by exhibiting autofluorescence when tested on purified HDAC proteins, thereby confounding the obtained results during both the pan-HDAC screening and the single point HDAC inhibition assay. To address this, we employed fluorophores with excitation and emission wavelengths outside of the emission range of 9 and found that the HDAC inhibition potential of 9 was weaker than first observed. Finally, Compound 9 was found to be very soluble in water (418 μM) and membrane permeable (>48 % flux). This study highlights the need for rigorous validation of results. In our case, two orthogonal testing methods were not sufficient to catch all the confounding factors involved in measurement of HDAC inhibition, and a third approach was required to identify the actual inhibition of 9 against HDAC9 and 11.
组蛋白去乙酰化酶(HDACs)是一种从组蛋白和其他蛋白质中去除酰基的酶。这一过程导致DNA的凝聚和随后特定基因表达的下调,改变了基本细胞途径的活性,改变了细胞的行为。因此,hdac已成为治疗不同形式癌症的潜在治疗靶点。在这项研究中,我们合成并研究了围绕苯唑支架构建的化合物,以表征其组蛋白去乙酰化酶抑制剂(HDACi)的活性。18种苯唑类类似物对细胞裂解液中I类和II类hdac具有抑制作用,其中7种具有中等活性,其中3种IC50值低于50 μM。对五个最佳候选药物进行了更广泛的HDAC1-11 (HDAC10除外)评估。最佳候选化合物9在10 μM浓度下,可使HDAC9和HDAC11的活性降低50%以上。通过计算对接探索化合物9与hdac的结合模式,其中有两个姿态比较突出。通过分子动力学模拟进一步探讨了这些问题。我们发现9很可能将HDAC9与埋在活性位点的吡咯基团结合,并与其中一个甘氨酸残基的主氧形成氢键。但这两种姿势都没有提供令人信服的论据来描述苯唑的作用模式,特别是当与本研究中测试的其他类似物进行比较时。其他实验发现,9以剂量依赖的方式抑制荧光素酶(IC50 < 1 μM),并在纯化的HDAC蛋白上表现出自身荧光,从而干扰细胞裂解物的测定,从而混淆了在泛HDAC筛选和单点HDAC抑制试验中获得的结果。为了解决这个问题,我们使用了激发和发射波长在9发射范围之外的荧光团,发现9的HDAC抑制电位比最初观察到的要弱。最后,化合物9可溶于水(418 μM),膜渗透性(>; 48%通量)。这项研究强调了对结果进行严格验证的必要性。在我们的案例中,两种正交试验方法不足以捕捉到测量HDAC抑制作用所涉及的所有混杂因素,需要第三种方法来确定9对HDAC9和11的实际抑制作用。
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引用次数: 0
The modulation of lipase from Candida rugosa activity by peptidomimetics 拟肽制剂对念珠菌脂肪酶活性的调节。
IF 3 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-15 DOI: 10.1016/j.bmc.2025.118490
Anna Brodzka, Anna Mazur, Dominik Koszelewski, Ryszard Ostaszewski
The library of selected peptidomimetics was synthesised via Passerini 3-component reaction. The SAR study of obtained α-acyloxy carboxamides for the catalytic activity of lipase from Candida rugosa was undertaken. The compounds were tested as potential CRL modulators on model 4-nitrophenol laurate hydrolysis reaction. Subsequently, three activators (EC50: 33–41 nM) and one inhibitor (IC50: 3.35 μM) were identified. The highest activity was observed in the presence of 1-((4-methoxybenzyl)amino)-1-oxo-3-phenylpropan-2-yl 2-phenylacetate, then the CRL was 2.3-fold more active than native enzyme, which was confirmed by kinetic parameters (Vmax). The best identified enhancer acts also as an activator of other bacteria lipases, however inhibits enzymes from other species – animal and plant. SAR studies revealed that the amide group has crucial impact on the activity of peptidomimetic. The replacement of substituent at para position in phenyl ring of benzyl amide moiety from methoxy group to hydrogen changes the action of modulator from enhancer to inhibitor. The best activator was also successfully used for enzymatic kinetic resolution of chiral epoxyester shortening the reaction time and increasing more than 10 times the enantioselectivity of this process.
通过雀形尼三组分反应合成了选定的拟肽物文库。对所得α-酰基羧胺对念珠菌脂肪酶的催化活性进行了SAR研究。对这些化合物作为模型4-硝基苯酚月桂酸酯水解反应的潜在CRL调节剂进行了测试。随后,鉴定出3种活化剂(EC50: 33-41 nM)和1种抑制剂(IC50: 3.35 μM)。在1-((4-甲氧基苄基)氨基)-1-氧-3-苯基丙烷-2-基苯基乙酸酯存在时,CRL活性最高,比天然酶活性高2.3倍,动力学参数(Vmax)证实了这一点。最好确定的增强剂也作为其他细菌脂肪酶的激活剂,但抑制其他物种-动物和植物的酶。SAR研究表明,酰胺基团对拟肽活性有重要影响。苯基酰胺部分苯基对位取代基由甲氧基置换为氢,使调节剂的作用由促进剂变为抑制剂。最佳活化剂还成功地用于手性环氧酯的酶解动力学,缩短了反应时间,使该工艺的对映选择性提高了10倍以上。
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引用次数: 0
Synthesis of Psidium meroterpenoids with anti-hepatocellular carcinoma activities 具有抗肝癌活性的Psidium - meroter萜类化合物的合成。
IF 3 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-14 DOI: 10.1016/j.bmc.2025.118481
Zhuo Wang , Chunngai Hui
Liver cancer presents as a significant human disease, and hepatocellular carcinoma appears as the most common form of liver cancer. Several therapeutic agents, such as sorafenib, are currently in Phase III clinical trials for the treatment of liver cancer. However, the development of potent and effective pharmaceuticals is undoubtedly crucial to managing the status of liver cancer and improving the quality of life of patients. Psidium meroterpenoids are natural products isolated from the leaves of Psidium guajava L., exhibiting potent cytotoxicity to hepatocellular carcinoma cell lines. Being synthetically accessible, Psidium meroterpenoids show tremendous potential as a therapeutic agent for hepatocellular carcinoma. This perspective outlines the biological profile, biosynthetic pathway, and chemical synthesis of Psidium meroterpenoids, as well as future directions and opportunities.
肝癌是一种重要的人类疾病,肝细胞癌是最常见的肝癌。几种治疗药物,如索拉非尼,目前正处于肝癌治疗的III期临床试验中。然而,开发有效的药物对于控制肝癌的病情和提高患者的生活质量无疑是至关重要的。番石榴叶子桃萜类化合物是从番石榴叶子桃叶中分离得到的天然产物,对肝癌细胞具有很强的细胞毒性。Psidium - meroterpenoids是一种易于合成的药物,作为肝细胞癌的治疗剂显示出巨大的潜力。本文概述了Psidium meroterpenoids的生物学概况、生物合成途径和化学合成,以及未来的发展方向和机遇。
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引用次数: 0
Novel oxadiazole analogs as anticancer agents: Design, synthesis, in vitro and in vivo biological evaluation, and computer studies of sphingosine kinase inhibitors 新型恶二唑类抗癌药物:鞘氨醇激酶抑制剂的设计、合成、体外和体内生物学评价及计算机研究
IF 3 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-14 DOI: 10.1016/j.bmc.2025.118487
Fuxun Huang , Xinmei Yang , Haiyang Wang , Xiujuan Shi , Xiaodong Zhao , Junru Liu , Yueyang Sun , Xingbo Song , Tong Li , Zhaoyang Li , Xi Qiu , Jingtong Feng , Yuanyuan Liu , Yuqi Gao , Yanling Mu , Zhengguo Cui , Peng Zhan , Bo Liu
Sphingosine kinases (SphKs) have emerged as novel therapeutic targets for treating cancer and inflammation via the SphK/S1P signaling pathway. However, the development of selective SphK inhibitors has been challenging because of their limited specificity. In this study, we used pharmacophore- and docking-based virtual screening to identify the lead compound DTD-8 (SphK1 IC₅₀ = 79 ± 0.73 μM) and then optimized the structure through structure-based drug design. Our newly synthesized 1,2,4-oxadiazole derivative, compound 22c, demonstrated selective inhibition against SphK2 (IC₅₀ = 2.24 ± 0.60 μM) over SphK1 (IC₅₀ = 64.20 ± 1.53 μM), representing 28-fold selectivity for SphK2. It also exhibited more potent anticancer activity against DU145 cells (IC₅₀ = 3.09 ± 0.67 μM) than cisplatin (IC₅₀ = 10.67 ± 1.00 μM) owing to its ability to induce S/G2 phase arrest and apoptosis.
In rats, Compound 22c showed favorable pharmacokinetic properties, including good metabolic stability (T₁/₂ = 19.6 h) and high plasma exposure (AUC₀–t = 1077.40 ng h/mL), along with promising in vivo tumor growth inhibition (TGI = 65.96 %). Given its moderate oral bioavailability (F = 54.88 %) and potent anticancer effects, 22c requires further investigation. These findings provide valuable insights for developing novel SphK2-targeted anticancer agents.
sphingosin激酶(SphKs)已成为通过SphK/S1P信号通路治疗癌症和炎症的新靶点。然而,选择性SphK抑制剂的开发一直具有挑战性,因为它们的特异性有限。在本研究中,我们使用基于药效团和对接的虚拟筛选方法鉴定了先导化合物DTD-8 (SphK1 IC₅₀= 79±0.73 μM),然后通过基于结构的药物设计对结构进行优化。我们新合成的1,2,4-二唑衍生物,化合物22c,对SphK2 (IC₅₀= 2.24±0.60 μM)的选择性抑制作用优于SphK1 (IC₅₀= 64.20±1.53 μM),对SphK2的选择性为28倍。由于其诱导S/G2期阻滞和细胞凋亡的能力,它对DU145细胞(IC₅₀= 3.09±0.67 μM)的抗癌活性也比顺铂(IC₅₀= 10.67±1.00 μM)更强。在大鼠中,化合物22c表现出良好的药代动力学特性,包括良好的代谢稳定性(T₁/ 2 = 19.6 h)和高血浆暴露(AUC 0 -t = 1077.40 ng h/mL),以及有希望的体内肿瘤生长抑制(TGI = 65.96%)。鉴于其中等的口服生物利用度(F = 54.88%)和有效的抗癌作用,22c需要进一步的研究。这些发现为开发新的sphk2靶向抗癌药物提供了有价值的见解。
{"title":"Novel oxadiazole analogs as anticancer agents: Design, synthesis, in vitro and in vivo biological evaluation, and computer studies of sphingosine kinase inhibitors","authors":"Fuxun Huang ,&nbsp;Xinmei Yang ,&nbsp;Haiyang Wang ,&nbsp;Xiujuan Shi ,&nbsp;Xiaodong Zhao ,&nbsp;Junru Liu ,&nbsp;Yueyang Sun ,&nbsp;Xingbo Song ,&nbsp;Tong Li ,&nbsp;Zhaoyang Li ,&nbsp;Xi Qiu ,&nbsp;Jingtong Feng ,&nbsp;Yuanyuan Liu ,&nbsp;Yuqi Gao ,&nbsp;Yanling Mu ,&nbsp;Zhengguo Cui ,&nbsp;Peng Zhan ,&nbsp;Bo Liu","doi":"10.1016/j.bmc.2025.118487","DOIUrl":"10.1016/j.bmc.2025.118487","url":null,"abstract":"<div><div>Sphingosine kinases (SphKs) have emerged as novel therapeutic targets for treating cancer and inflammation <em>via</em> the SphK/S1P signaling pathway. However, the development of selective SphK inhibitors has been challenging because of their limited specificity. In this study, we used pharmacophore- and docking-based virtual screening to identify the lead compound <strong>DTD-8</strong> (SphK1 IC₅₀ = 79 ± 0.73 μM) and then optimized the structure through structure-based drug design. Our newly synthesized 1,2,4-oxadiazole derivative, compound <strong>22c</strong>, demonstrated selective inhibition against SphK2 (IC₅₀ = 2.24 ± 0.60 μM) over SphK1 (IC₅₀ = 64.20 ± 1.53 μM), representing 28-fold selectivity for SphK2. It also exhibited more potent anticancer activity against DU145 cells (IC₅₀ = 3.09 ± 0.67 μM) than cisplatin (IC₅₀ = 10.67 ± 1.00 μM) owing to its ability to induce S/G2 phase arrest and apoptosis.</div><div>In rats, Compound <strong>22c</strong> showed favorable pharmacokinetic properties, including good metabolic stability (T₁<sub>/</sub>₂ = 19.6 h) and high plasma exposure (AUC₀–<em>t</em> = 1077.40 ng h/mL), along with promising <em>in vivo</em> tumor growth inhibition (TGI = 65.96 %). Given its moderate oral bioavailability (F = 54.88 %) and potent anticancer effects, <strong>22c</strong> requires further investigation. These findings provide valuable insights for developing novel SphK2-targeted anticancer agents.</div></div>","PeriodicalId":255,"journal":{"name":"Bioorganic & Medicinal Chemistry","volume":"133 ","pages":"Article 118487"},"PeriodicalIF":3.0,"publicationDate":"2025-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145578652","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Exogenous/endogenous stimuli-responsive antitumor prodrugs advance precision chemotherapy 外源性/内源性刺激应答性抗肿瘤前药推进精准化疗。
IF 3 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-14 DOI: 10.1016/j.bmc.2025.118485
Luo Wang , Jingao Li , Xuanwei Zeng , Qinyue Lu , Yifeng Wang , Zulhumar Anwar , Li Xue , Heli Fan , Huabing Sun
Precision chemotherapy aims to selectively target cancer cells while sparing healthy cells, thereby addressing a major challenge in traditional chemotherapy, off-target toxicity. Stimuli-responsive antitumor prodrugs leverage exogenous or endogenous triggers for targeted drug activation, which represents a significant advancement in this field. Exogenous stimuli, such as light, ionizing radiation, and ultrasound, usually offer spatiotemporal precision at tumor sites to minimize systemic side effects. Similarly, endogenous stimuli, including hypoxia, acidic pH, the overexpression of specific enzymes, and elevated levels of reactive oxygen species (ROS) and glutathione (GSH), exploit the unique tumor microenvironment to facilitate selective activation. These prodrugs undergo specific chemical or enzymatic reactions in response to their respective triggers, releasing active therapeutic agents at desired sites. This review provides an overall analysis of recent advances in both exogenous and endogenous stimuli-responsive prodrugs, with a focus on their design principles, activation mechanisms, and therapeutic efficacy. By highlighting these emerging strategies, we aim to underscore the potential of stimuli-responsive prodrugs to enhance therapeutic efficacy and safety, paving the way for precision chemotherapy.
精确化疗旨在选择性地靶向癌细胞,同时保留健康细胞,从而解决传统化疗的主要挑战,脱靶毒性。刺激反应性抗肿瘤前药利用外源性或内源性触发器进行靶向药物激活,这代表了该领域的重大进展。外源性刺激,如光、电离辐射和超声,通常提供肿瘤部位的时空精度,以尽量减少全身副作用。同样,内源性刺激,包括缺氧、酸性pH、特定酶的过度表达、活性氧(ROS)和谷胱甘肽(GSH)水平升高,利用独特的肿瘤微环境促进选择性激活。这些前药经过特定的化学或酶反应,以响应各自的触发因素,在所需的部位释放活性治疗剂。本文综述了外源性和内源性刺激反应性前药的最新进展,重点介绍了它们的设计原理、激活机制和治疗效果。通过强调这些新兴策略,我们旨在强调刺激反应性前药在提高治疗疗效和安全性方面的潜力,为精确化疗铺平道路。
{"title":"Exogenous/endogenous stimuli-responsive antitumor prodrugs advance precision chemotherapy","authors":"Luo Wang ,&nbsp;Jingao Li ,&nbsp;Xuanwei Zeng ,&nbsp;Qinyue Lu ,&nbsp;Yifeng Wang ,&nbsp;Zulhumar Anwar ,&nbsp;Li Xue ,&nbsp;Heli Fan ,&nbsp;Huabing Sun","doi":"10.1016/j.bmc.2025.118485","DOIUrl":"10.1016/j.bmc.2025.118485","url":null,"abstract":"<div><div>Precision chemotherapy aims to selectively target cancer cells while sparing healthy cells, thereby addressing a major challenge in traditional chemotherapy, off-target toxicity. Stimuli-responsive antitumor prodrugs leverage exogenous or endogenous triggers for targeted drug activation, which represents a significant advancement in this field. Exogenous stimuli, such as light, ionizing radiation, and ultrasound, usually offer spatiotemporal precision at tumor sites to minimize systemic side effects. Similarly, endogenous stimuli, including hypoxia, acidic pH, the overexpression of specific enzymes, and elevated levels of reactive oxygen species (ROS) and glutathione (GSH), exploit the unique tumor microenvironment to facilitate selective activation. These prodrugs undergo specific chemical or enzymatic reactions in response to their respective triggers, releasing active therapeutic agents at desired sites. This review provides an overall analysis of recent advances in both exogenous and endogenous stimuli-responsive prodrugs, with a focus on their design principles, activation mechanisms, and therapeutic efficacy. By highlighting these emerging strategies, we aim to underscore the potential of stimuli-responsive prodrugs to enhance therapeutic efficacy and safety, paving the way for precision chemotherapy.</div></div>","PeriodicalId":255,"journal":{"name":"Bioorganic & Medicinal Chemistry","volume":"132 ","pages":"Article 118485"},"PeriodicalIF":3.0,"publicationDate":"2025-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145547488","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Bioorganic & Medicinal Chemistry
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