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Research progress of flavonoids targeting estrogen receptor in the treatment of breast cancer
IF 3.3 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-07 DOI: 10.1016/j.bmc.2025.118106
Jianling Long , Pengju Ye , Weixi Yuan , Qixian Yang , Zhe Wang , Hongxiang Xiao , Zhizhong Xie , Xiaoyong Lei , Xiaoyan Yang , Xiangping Deng , Guotao Tang
Breast cancer (BC) stands as the most prevalent malignancy among women. Targeting the estrogen receptor (ER) or ER pathway is one of the important approaches for ER+ BC treatment. As a class of phytoestrogens, flavonoids possess notable anti-tumor properties and hold immense potential in regulating ER signaling. In this review, we reported the recent advances in both in vitro and in vivo studies of flavonoids and their synthetic derivatives targeting the ER signaling pathway, including the target and mechanism of action of these molecules, as well as their structure–activity relationship. Based on the available literature, the beneficial effects of flavonoids as ER targeting agents are promising but they require further in vitro and in vivo studies to enable its translation from bench to bedside. This review will provide valuable guidance and insights for the future development of drugs targeting the ER pathway.
{"title":"Research progress of flavonoids targeting estrogen receptor in the treatment of breast cancer","authors":"Jianling Long ,&nbsp;Pengju Ye ,&nbsp;Weixi Yuan ,&nbsp;Qixian Yang ,&nbsp;Zhe Wang ,&nbsp;Hongxiang Xiao ,&nbsp;Zhizhong Xie ,&nbsp;Xiaoyong Lei ,&nbsp;Xiaoyan Yang ,&nbsp;Xiangping Deng ,&nbsp;Guotao Tang","doi":"10.1016/j.bmc.2025.118106","DOIUrl":"10.1016/j.bmc.2025.118106","url":null,"abstract":"<div><div>Breast cancer (BC) stands as the most prevalent malignancy among women. Targeting the estrogen receptor (ER) or ER pathway is one of the important approaches for ER<sup>+</sup> BC treatment. As a class of phytoestrogens, flavonoids possess notable anti-tumor properties and hold immense potential in regulating ER signaling. In this review, we reported the recent advances in both <em>in vitro</em> and <em>in vivo</em> studies of flavonoids and their synthetic derivatives targeting the ER signaling pathway, including the target and mechanism of action of these molecules, as well as their structure–activity relationship. Based on the available literature, the beneficial effects of flavonoids as ER targeting agents are promising but they require further <em>in vitro</em> and <em>in vivo</em> studies to enable its translation from bench to bedside. This review will provide valuable guidance and insights for the future development of drugs targeting the ER pathway.</div></div>","PeriodicalId":255,"journal":{"name":"Bioorganic & Medicinal Chemistry","volume":"120 ","pages":"Article 118106"},"PeriodicalIF":3.3,"publicationDate":"2025-02-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143378045","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Rational design and synthesis of pyrazole derivatives as potential SARS-CoV-2 Mpro inhibitors: An integrated approach merging combinatorial chemistry, molecular docking, and deep learning
IF 3.3 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-03 DOI: 10.1016/j.bmc.2025.118095
Arthur Antunes Ferrarezi , João Vítor Perez de Souza , Bernard Maigret , Érika Seki Kioshima , Sidnei Moura , Arildo José Braz de Oliveira , Fernanda Andreia Rosa , Regina Aparecida Correia Gonçalves
The global impact of SARS-CoV-2 has highlighted the urgent need for novel antiviral therapies. This study integrates combinatorial chemistry, molecular docking, and deep learning to design, evaluate and synthesize new pyrazole derivatives as potential inhibitors of the SARS-CoV-2 main protease (Mpro). A library of over 60,000 pyrazole-based structures was generated through scaffold decoration to enhance chemical diversity. Virtual screening employed molecular docking (ChemPLP scoring) and deep learning (DeepPurpose), with consensus ranking to identify top candidates. Binding free energy calculations refined the selection, revealing critical structural features such as tryptamine and N-phenyl fragments for Mpro binding. High-temperature solvent-free amidation allowed the synthesis of a selected derivative. Final compounds demonstrated favorable drug-likeness properties based on Lipinski’s and Veber’s rules. This work highlights the integration of computational and synthetic strategies to accelerate the discovery of Mpro inhibitors and provides a framework for future antiviral development.
{"title":"Rational design and synthesis of pyrazole derivatives as potential SARS-CoV-2 Mpro inhibitors: An integrated approach merging combinatorial chemistry, molecular docking, and deep learning","authors":"Arthur Antunes Ferrarezi ,&nbsp;João Vítor Perez de Souza ,&nbsp;Bernard Maigret ,&nbsp;Érika Seki Kioshima ,&nbsp;Sidnei Moura ,&nbsp;Arildo José Braz de Oliveira ,&nbsp;Fernanda Andreia Rosa ,&nbsp;Regina Aparecida Correia Gonçalves","doi":"10.1016/j.bmc.2025.118095","DOIUrl":"10.1016/j.bmc.2025.118095","url":null,"abstract":"<div><div>The global impact of SARS-CoV-2 has highlighted the urgent need for novel antiviral therapies. This study integrates combinatorial chemistry, molecular docking, and deep learning to design, evaluate and synthesize new pyrazole derivatives as potential inhibitors of the SARS-CoV-2 main protease (M<sup>pro</sup>). A library of over 60,000 pyrazole-based structures was generated through scaffold decoration to enhance chemical diversity. Virtual screening employed molecular docking (ChemPLP scoring) and deep learning (DeepPurpose), with consensus ranking to identify top candidates. Binding free energy calculations refined the selection, revealing critical structural features such as tryptamine and <em>N</em>-phenyl fragments for M<sup>pro</sup> binding. High-temperature solvent-free amidation allowed the synthesis of a selected derivative. Final compounds demonstrated favorable drug-likeness properties based on Lipinski’s and Veber’s rules. This work highlights the integration of computational and synthetic strategies to accelerate the discovery of M<sup>pro</sup> inhibitors and provides a framework for future antiviral development.</div></div>","PeriodicalId":255,"journal":{"name":"Bioorganic & Medicinal Chemistry","volume":"120 ","pages":"Article 118095"},"PeriodicalIF":3.3,"publicationDate":"2025-02-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143372381","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Design, Synthesis and Biological Evaluation of 2-Phenyl Indole Analogues of OXi8006 as Colchicine Site Inhibitors of Tubulin Polymerization and Vascular Disrupting Agents OXi8006 的 2-苯基吲哚类似物作为秋水仙碱位点管蛋白聚合抑制剂和血管破坏剂的设计、合成和生物学评价。
IF 3.3 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-01 DOI: 10.1016/j.bmc.2024.117981
Rebecca Vairin , Caleb Tamminga , Zhe Shi , Christian Borchardt , Jayaram Jambulapati , Ruoli Bai , Hashini Wanniarachchi , Lorena Bueno , Ernest Hamel , Ralph P. Mason , Mary Lynn Trawick , Kevin G. Pinney
Inhibitors of tubulin polymerization represent a promising therapeutic approach for the treatment of solid tumors. Molecules that bind to the colchicine site are of interest as they can function with a dual mechanism of action as both potent antiproliferative agents and tumor-selective vascular disrupting agents (VDAs). One such example is a 2-aryl-3-aroyl-indole molecule (OXi8006) from our laboratory that demonstrates potent inhibition of tubulin polymerization and strong antiproliferative activity (cytotoxicity) against a variety of human cancer cell lines. A water-soluble prodrug OXi8007, synthesized from OXi8006, demonstrates in vivo disruption of tumor-associated microvessels in several tumor types (mouse models). The molecular framework of OXi8006 inspired a series of fourteen new 2-aryl-3-aroyl-indole analogues that incorporated various functional group modifications on both the indole core and the aroyl ring. Electron withdrawing and donating groups at the mono-substituted 3′ position and the di-substituted 3′,5′ positions were all accommodated while maintaining inhibition of tubulin polymerization (IC50 < 5 μM), with several analogues demonstrating activity comparable to OXi8006 and the benchmark natural product combretastatin A-4 (CA4). Preliminary structure–activity relationship (SAR) studies were further enhanced by molecular docking to predict possible colchicine site interactions. Two analogues (KGP366 and KGP369) previously synthesized in our laboratory were re-synthesized using a somewhat modified route to increase synthetic efficiency and were subsequently converted to their corresponding water-soluble phosphate prodrug salts to evaluate their efficacy as VDAs. Administration of the prodrug salt (KGP415) of KGP369 caused significant reduction in bioluminescence signal from an orthotopic kidney tumor (RENCA-luc) in BALB/c mice, indicative of VDA activity. Collectively, these new functionalized indole-based analogues have extended SAR knowledge related to the colchicine binding site, and the most biologically active analogues hold promise for continued development as pre-clinical candidates for cancer therapy.
微管蛋白聚合抑制剂是治疗实体瘤的一种很有前途的治疗方法。与秋水仙碱位点结合的分子具有双重作用机制,既可以作为有效的抗增殖剂,也可以作为肿瘤选择性血管破坏剂(VDAs)。其中一个例子是我们实验室的2-芳基-3-芳基-吲哚分子(ox8006),它显示出对微管蛋白聚合的有效抑制和对多种人类癌细胞系的强抗增殖活性(细胞毒性)。由氧化8006合成的水溶性前药氧化8007,在几种肿瘤类型(小鼠模型)中显示出肿瘤相关微血管的体内破坏。氧化8006的分子框架激发了一系列14个新的2-芳基-3-芳基-吲哚类似物,这些类似物在吲哚核心和芳基环上结合了不同的官能团修饰。单取代3′位和双取代3′、5′位的吸电子和给电子基团均被容纳,同时保持对微管蛋白聚合的抑制作用(IC50)
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引用次数: 0
Charge-neutralized polyethylenimine-lipid nanoparticles for gene transfer to human embryonic stem cells 用于人胚胎干细胞基因转移的电荷中和聚乙烯亚胺脂纳米颗粒。
IF 3.3 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-01 DOI: 10.1016/j.bmc.2024.118008
Guoqing Feng , Yang Bai , Pengyu Huang , Yuan Liu , Qingbin Yang , Bowen Li , Qing Yuan , Niansong Qian , Bin Zheng
Gene delivery is fundamentally crucial for the genetic manipulation of stem cells. Here, we present a straightforward approach to create a library of charge-neutralized polyethylenimine (PEI)-lipid nanoparticles designed for stem cell transfection. These lipid nanoparticles were formulated using small, branched PEI and lipidic anhydrides. Remarkably, over 15% of the lipid nanoparticles demonstrated high transfection efficiency across various cell types, surpassing the efficiency of both Lipofectamine 2000 and FuGENE HD. A structure–activity analysis indicated that the length and ratio of hydrophobic alkyl substitutions were critical parameters for efficient gene delivery. Notably, the transfection efficiency was higher than that of the original cation PEI. Our optimized PEI-lipid system enabled highly effective plasmid DNA delivery and successfully co-transferred two plasmid DNAs into difficult-to-transfect human embryonic stem cells (hESCs), facilitating optogenetic manipulation within these cells.
基因传递对于干细胞的基因操作至关重要。在这里,我们提出了一种直接的方法来创建一个用于干细胞转染的电荷中和聚乙烯亚胺(PEI)脂质纳米颗粒库。这些脂质纳米颗粒是用小的,支化的PEI和脂质酸酐配制的。值得注意的是,超过15%的脂质纳米颗粒在各种细胞类型中表现出较高的转染效率,超过了Lipofectamine 2000和FuGENE HD的效率。结构-活性分析表明,疏水烷基取代的长度和比例是有效传递基因的关键参数。值得注意的是,转染效率高于原阳离子PEI。我们优化的pei -脂质系统实现了高效的质粒DNA传递,并成功地将两个质粒DNA共转移到难以转染的人胚胎干细胞(hESCs)中,促进了这些细胞内的光遗传学操作。
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引用次数: 0
Potential COX-2 inhibitors modulating NF-κB/MAPK signaling pathways: Design, synthesis and evaluation of anti-inflammatory activity of Pterostilbene-carboxylic acid derivatives with an oxime ether moiety 调节NF-κB/MAPK信号通路的潜在COX-2抑制剂:含肟醚片段的紫光二苯乙烯-羧酸衍生物的设计、合成和抗炎活性评价
IF 3.3 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-01 DOI: 10.1016/j.bmc.2024.118022
Peng Luo , Taotao Chen , Shaoling Huang , Feng Peng , Yunhou Huang , Weigao Pan
In this work, a series of novel Pterostilbene–oxime ether–carboxylic acid (POC) derivatives (d1–d10, e1–e10 and 113) were designed, synthesized, and characterized by spectroscopic techniques. In order to further determine the absolute configuration of these compounds, one of them, compound d3, was investigated by X-ray single crystal diffraction method. d3 had a triclinic crystal with P-1 space group, and its CHCH and CHN was confirmed as E configuration. A strong hydrogen bond was formed between the hydrogen atom in CHCH moiety and the nitrogen atom in CHN moiety, which was a vital factor in the formation and stability of E configuration in the CHCH and CHN. The safety and anti-inflammatory activities of compounds (d1–d10, e1–e10 and 113) in vitro were evaluated. At 20 μM, compounds (d1–d10, e1–e10 and 113 were non-toxic and exhibited weak to strong inhibitory effects on the LPS-induced NO release. Among them, five compounds (1, 2, 7, 8 and 9) showed excellent anti-inflammatory effects with IC50 (NO) values ranging from 9.87 to 19.78 μM, as well as strong COX-2 inhibitory abilities with IC50 (COX-2) values ranging from 85.44 to 140.88 nM. Moreover, there was a rough positive correlation between their anti-inflammatory properties and the COX-2 inhibitory abilities. Compounds (1, 2, 7, 8 and 9) smoothly docked with COX-2 protein (PDB ID: 5KIR) to form stable complexes with strong hydrogen bonds, with an affinity range of −8.3 to −9.9 kcal/mol. SAR indicated that the amidation of POC at R2 position was more favorable for enhancing the compound’s biological actives than esterification. In addition, the 4-fluobenzyl substitution at R2 position of the oxime ether moiety can obviously enhance the activity of above amide derivates. Introducing acyl groups (CO(CH2)nCH3, n = 2, 4 and 6) into NH(CH2)3OH group to form ester chain is disadvantageous for activity enhancing, moreover, the longer the carbon chain, the poorer the activity. The strongest COX-2 inhibitor (IC50 (COX-2) = 85.44 ± 3.88 nM), compound 7, exerted as anti-inflammatory activities (IC50 (NO) = 9.87 ± 1.38 μM) by down-regulating the expression of COX-2 and iNOS, and modulating NF-κB/MAPK signaling pathways.
本文设计、合成了一系列新型的紫光二苯乙烯-肟醚-羧酸(POC)衍生物(d1-d10、e1-e10和1-13),并用光谱技术对其进行了表征。为了进一步确定这些化合物的绝对构型,用x射线单晶衍射法对其中的化合物d3进行了研究。d3具有一个具有P-1空间基团的三斜晶体,其CHCH和CHN被确认为E构型。CHCH片段中的氢原子与CHN片段中的氮原子之间形成了强氢键,这是CHCH和CHN中E构型形成和稳定的重要因素。对化合物d1-d10、e1-e10和1-13的体外安全性和抗炎活性进行了评价。在20 μM下,化合物(d1-d10、e1-e10和1-13)对lps诱导的NO释放具有弱到强的抑制作用。其中,化合物1、2、7、8、9表现出较好的抗炎作用,IC50 (NO)值在9.87 ~ 19.78 μM之间,抑制COX-2的能力较强,IC50 (COX-2)值在85.44 ~ 140.88 nM之间。此外,它们的抗炎特性与COX-2抑制能力之间存在大致的正相关。化合物(1、2、7、8和9)与COX-2蛋白(PDB ID: 5KIR)顺利对接,形成具有强氢键的稳定配合物,亲和范围为-8.3 ~ -9.9 kcal/mol。SAR结果表明,在R2位点对POC进行酰胺化处理比酯化处理更有利于提高化合物的生物活性。此外,肟醚部分R2位置的4-氟苯取代可以明显提高上述酰胺衍生物的活性。在NH(CH2)3OH基团中引入酰基(CO(CH2)nCH3, n = 2、4和6)形成酯链不利于活性增强,且碳链越长活性越差。最强的COX-2抑制剂化合物7 (IC50 (COX-2) = 85.44±3.88 nM)通过下调COX-2和iNOS的表达,调节NF-κB/MAPK信号通路发挥抗炎作用(IC50 (NO) = 9.87±1.38 μM)。
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引用次数: 0
Synthesis and in vitro evaluation of novel compounds and discovery of a promising iodine-125 radioligand for purinergic P2X7 receptor (P2X7R) 嘌呤能P2X7受体(P2X7R)新化合物的合成和体外评价及有前途的碘-125放射性配体的发现。
IF 3.3 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-01 DOI: 10.1016/j.bmc.2024.118054
Lin Qiu , Jinzhi Wang , Manju Tewari , Derek T. Rensing , Terrance M. Egan , Joel S. Perlmutter , Zhude Tu
The purinergic P2X ligand-gated ion channel 7 receptor (P2X7R) plays a critical role in various inflammatory processes and other diseases. Fast determination of compounds P2X7R binding potency and discovery of a promise PET radiotracer for imaging P2X7R require a P2X7R suitable radioligand for radioactive competitive binding assay. Herein, we designed and synthesized thirteen new P2X7R ligands and determined the in vitro binding potency. The fluorescence screening assay identified the iodide compound 1c with high potency and specificity toward P2X7R with an IC50 of 0.25 ± 0.05 nM. Therefore, 1c was 125I-labeled to afford [125I]1c with a good radiochemical yield (44 ± 12 %, n = 3) and high radiochemical purity (>95 %). Radioligand saturation binding assay showed that [125I]1c specifically bound to human P2X7R with high affinity (Kd = 1.68 nM and Bmax = 94 fmol/mg). A radioactive high throughput binding assay using [125I]1c for our new compounds demonstrated that the imidazole compounds 1b, 1c, and 1d exhibited high inhibition for >70 %, while the analogues of GSK314181A exhibited low inhibition for <35 %. In addition, our radioligand competitive binding assays using [125I]1c demonstrated that 1b, 1c, and 1d have high potency with IC50 values of 7.91 ± 0.22, 7.06 ± 1.68, and 7.16 ± 0.41 nM toward P2X7R, respectively.Together, compounds 1b, 1c, and 1d are highly potent for P2X7R, and [125I]1c has great potential to be a radioligand for screening P2X7R binding potency of the new compounds and investigating the P2X7R expression in animal models of human disease.
嘌呤能P2X配体门控离子通道7受体(P2X7R)在多种炎症过程和其他疾病中起关键作用。快速测定化合物P2X7R的结合能力和发现一种有希望的PET放射性示踪剂来成像P2X7R,需要一种适合P2X7R的放射性配体来进行放射性竞争结合试验。本文设计并合成了13个新的P2X7R配体,并测定了它们的体外结合能力。荧光筛选鉴定出对P2X7R具有高效和特异性的碘化化合物1c, IC50为0.25±0.05 nM。因此,对1c进行125I标记,以获得具有良好放射化学产率(44±12%,n = 3)和高放射化学纯度(> 95%)的[125I]1c。放射性配体饱和结合实验表明,[125I]1c与人P2X7R具有高亲和力(Kd = 1.68 nM, Bmax = 94 fmol/mg)。用[125I]1c对我们的新化合物进行放射性高通量结合实验表明,咪唑类化合物1b、1c和1d对bbb70 %具有高抑制作用,而GSK314181A类似物对125I]1c的抑制作用较低,表明1b、1c和1d对P2X7R的IC50值分别为7.91±0.22、7.06±1.68和7.16±0.41 nM。化合物1b、1c和1d对P2X7R具有很强的活性,[125I]1c极有可能成为筛选新化合物的P2X7R结合能力和研究P2X7R在人类疾病动物模型中的表达的放射配体。
{"title":"Synthesis and in vitro evaluation of novel compounds and discovery of a promising iodine-125 radioligand for purinergic P2X7 receptor (P2X7R)","authors":"Lin Qiu ,&nbsp;Jinzhi Wang ,&nbsp;Manju Tewari ,&nbsp;Derek T. Rensing ,&nbsp;Terrance M. Egan ,&nbsp;Joel S. Perlmutter ,&nbsp;Zhude Tu","doi":"10.1016/j.bmc.2024.118054","DOIUrl":"10.1016/j.bmc.2024.118054","url":null,"abstract":"<div><div>The purinergic P2X ligand-gated ion channel 7 receptor (P2X7R) plays a critical role in various inflammatory processes and other diseases. Fast determination of compounds P2X7R binding potency and discovery of a promise PET radiotracer for imaging P2X7R require a P2X7R suitable radioligand for radioactive competitive binding assay. Herein, we designed and synthesized thirteen new P2X7R ligands and determined the <em>in vitro</em> binding potency. The fluorescence screening assay identified the iodide compound <strong>1c</strong> with high potency and specificity toward P2X7R with an IC<sub>50</sub> of 0.25 ± 0.05 nM. Therefore, <strong>1c</strong> was <sup>125</sup>I-labeled to afford [<sup>125</sup>I]<strong>1c</strong> with a good radiochemical yield (44 ± 12 %, n = 3) and high radiochemical purity (&gt;95 %). Radioligand saturation binding assay showed that [<sup>125</sup>I]<strong>1c</strong> specifically bound to human P2X7R with high affinity (K<sub>d</sub> = 1.68 nM and B<sub>max</sub> = 94 fmol/mg). A radioactive high throughput binding assay using [<sup>125</sup>I]<strong>1c</strong> for our new compounds demonstrated that the imidazole compounds <strong>1b</strong>, <strong>1c</strong>, and <strong>1d</strong> exhibited high inhibition for &gt;70 %, while the analogues of <strong>GSK314181A</strong> exhibited low inhibition for &lt;35 %. In addition, our radioligand competitive binding assays using [<sup>125</sup>I]<strong>1c</strong> demonstrated that <strong>1b</strong>, <strong>1c</strong>, and <strong>1d</strong> have high potency with IC<sub>50</sub> values of 7.91 ± 0.22, 7.06 ± 1.68, and 7.16 ± 0.41 nM toward P2X7R, respectively.Together, compounds <strong>1b</strong>, <strong>1c</strong>, and <strong>1d</strong> are highly potent for P2X7R, and [<sup>125</sup>I]<strong>1c</strong> has great potential to be a radioligand for screening P2X7R binding potency of the new compounds and investigating the P2X7R expression in animal models of human disease.</div></div>","PeriodicalId":255,"journal":{"name":"Bioorganic & Medicinal Chemistry","volume":"118 ","pages":"Article 118054"},"PeriodicalIF":3.3,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142908824","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Synthetic glycol-split heparin tri- and tetrasaccharides provide new insights into structural peculiarities for antiheparanase activity 合成乙二醇分裂肝素三糖和四糖为抗肝素酶活性的结构特性提供了新的见解。
IF 3.3 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-01 DOI: 10.1016/j.bmc.2024.118052
Minghong Ni , Michela Parafioriti , Emiliano Esposito , Margherita Danzi , Ornela Cano , Laura Muzi , Yasmin Kayal , Vito Ferro , Israel Vlodavsky , Stefano Elli , Annamaria Naggi , Maurice Petitou , Marco Guerrini
Heparanase is the only known endo-β-glucuronidase able to cleave heparan sulfate, participating in degradation and remodelling of the extracellular matrix. Heparanase upregulation promotes tumor growth and metastasis, therefore, its inhibition is a target for anticancer therapies. Heparan sulfate mimetics bearing glycol-split (gs) units are one of the most promising class of heparanase inhibitors. Herein we describe a total synthesis of two trisaccharides (MeO-GlcNS6S-IdoA/GlcA-GlcNS6S-OMe) differing in epimeric uronic acid residues and one tetrasaccharide (MeO-IdoA-GlcNS6S-IdoA-GlcNS6S-OMe), together with their corresponding glycol-split versions, prepared by periodate oxidation and further modified either via reduction or Pinnick oxidation to obtain gs or tricarboxylated saccharides. An intermediate imine was observed during periodate oxidation, which causes formation of byproducts. Evaluation of the heparanase inhibitory activity showed that the glycol-split trisaccharides were more potent than their intact uronic acid congeners. The binding interactions of the glycol-split trisaccharides with heparanase were investigated by a combined STD NMR and molecular docking approach, with good agreement obtained between the STD NMR experimental data, docking calculations and the in vitro activity results, helping to rationalize the observed inhibition data.
肝素酶是唯一已知的能够裂解硫酸肝素,参与细胞外基质降解和重塑的内切β-葡萄糖醛酸酶。肝素酶上调可促进肿瘤生长和转移,因此抑制肝素酶是抗癌治疗的靶点。含有乙二醇分裂(gs)单元的硫酸乙酰肝素模拟物是最有前途的一类肝素酶抑制剂。在这里,我们描述了两种三糖(MeO-GlcNS6S-IdoA/GlcA-GlcNS6S-OMe)和一种四糖(MeO-IdoA-GlcNS6S-IdoA-GlcNS6S-OMe)的全合成,以及它们相应的乙二醇分裂版本,通过高酸盐氧化制备,并进一步通过还原或Pinnick氧化修饰得到gs或三羧基化糖。在高碘酸盐氧化过程中观察到一种中间亚胺,它引起副产物的形成。肝素酶抑制活性的评价表明,乙二醇分裂三糖比其完整的醛酸同系物更有效。采用STD NMR和分子对接相结合的方法研究了二醇分裂三糖与肝素酶的结合作用,STD NMR实验数据、对接计算结果与体外活性结果吻合较好,有助于理顺观察到的抑制数据。
{"title":"Synthetic glycol-split heparin tri- and tetrasaccharides provide new insights into structural peculiarities for antiheparanase activity","authors":"Minghong Ni ,&nbsp;Michela Parafioriti ,&nbsp;Emiliano Esposito ,&nbsp;Margherita Danzi ,&nbsp;Ornela Cano ,&nbsp;Laura Muzi ,&nbsp;Yasmin Kayal ,&nbsp;Vito Ferro ,&nbsp;Israel Vlodavsky ,&nbsp;Stefano Elli ,&nbsp;Annamaria Naggi ,&nbsp;Maurice Petitou ,&nbsp;Marco Guerrini","doi":"10.1016/j.bmc.2024.118052","DOIUrl":"10.1016/j.bmc.2024.118052","url":null,"abstract":"<div><div>Heparanase is the only known <em>endo</em>-β-glucuronidase able to cleave heparan sulfate, participating in degradation and remodelling of the extracellular matrix. Heparanase upregulation promotes tumor growth and metastasis, therefore, its inhibition is a target for anticancer therapies. Heparan sulfate mimetics bearing glycol-split (gs) units are one of the most promising class of heparanase inhibitors. Herein we describe a total synthesis of two trisaccharides (MeO-GlcNS6S-IdoA/GlcA-GlcNS6S-OMe) differing in epimeric uronic acid residues and one tetrasaccharide (MeO-IdoA-GlcNS6S-IdoA-GlcNS6S-OMe), together with their corresponding glycol-split versions, prepared by periodate oxidation and further modified either via reduction or Pinnick oxidation to obtain gs or tricarboxylated saccharides. An intermediate imine was observed during periodate oxidation, which causes formation of byproducts. Evaluation of the heparanase inhibitory activity showed that the glycol-split trisaccharides were more potent than their intact uronic acid congeners. The binding interactions of the glycol-split trisaccharides with heparanase were investigated by a combined STD NMR and molecular docking approach, with good agreement obtained between the STD NMR experimental data, docking calculations and the in vitro activity results, helping to rationalize the observed inhibition data<strong>.</strong></div></div>","PeriodicalId":255,"journal":{"name":"Bioorganic & Medicinal Chemistry","volume":"118 ","pages":"Article 118052"},"PeriodicalIF":3.3,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142913157","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Tc-99m labeled PSMA-617 as a potential SPECT radiotracer for prostate cancer diagnostics: Complexation optimization and its in vitro/vivo evaluation Tc-99m标记PSMA-617作为前列腺癌诊断的潜在SPECT放射示踪剂:络合优化及其体外/体内评价
IF 3.3 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-01 DOI: 10.1016/j.bmc.2024.118058
Kalapaphuk Tachatumvitoon , Charasphat Preuksarattanawut , Thititip Tippayamontri , Piyachai Khomein
Technetium-99m (Tc-99m) is the most employed radionuclide in nuclear imaging diagnostics worldwide for many diseases. The ideal physiochemical properties of Tc-99m (such as half-life and pure gamma energy) make it favorable for Single Photon Emission Computed Tomography (SPECT). In this study, we aim to expand the utilization of Tc-99m radiopharmaceutical toward prostate cancer diagnostics which is currently no FDA approved products and has been intensively examined for a potential candidate. The new formulation for Tc-99m complexation with PSMA-617, a current ligand for radionuclide therapy of prostate cancer with lutetium-177 (Lu-177), has been investigated. Co-complexation with citrate was utilized to improve the labeling efficiency by over 97 %. The stability of the new radiopharmaceutical was in vitro evaluated confirming that the Tc-99m labeled PSMA-617 remained stable for over a single half-life of Tc-99m in normal saline solution and in human serum. The in vivo study in the LNCaP xenografted mouse model confirmed a high selectivity of the new tracer toward prostate cancer.
锝-99m (Tc-99m)是世界上许多疾病的核成像诊断中使用最多的放射性核素。Tc-99m理想的物理化学性质(如半衰期和纯γ能量)使其有利于单光子发射计算机断层扫描(SPECT)。在本研究中,我们的目标是扩大Tc-99m放射性药物在前列腺癌诊断中的应用,Tc-99m目前还没有获得FDA批准的产品,并且已经在为潜在的候选产品进行深入研究。研究了Tc-99m与PSMA-617络合的新配方,PSMA-617是目前用镥-177 (Lu-177)治疗前列腺癌的配体。利用与柠檬酸盐的共络合使标记效率提高97%以上。新的放射性药物的稳定性进行了体外评估,确认Tc-99m标记的PSMA-617在正常生理盐水溶液和人血清中保持稳定超过Tc-99m的单个半衰期。在LNCaP异种移植小鼠模型的体内研究证实了这种新型示踪剂对前列腺癌的高选择性。
{"title":"Tc-99m labeled PSMA-617 as a potential SPECT radiotracer for prostate cancer diagnostics: Complexation optimization and its in vitro/vivo evaluation","authors":"Kalapaphuk Tachatumvitoon ,&nbsp;Charasphat Preuksarattanawut ,&nbsp;Thititip Tippayamontri ,&nbsp;Piyachai Khomein","doi":"10.1016/j.bmc.2024.118058","DOIUrl":"10.1016/j.bmc.2024.118058","url":null,"abstract":"<div><div>Technetium-99m (Tc-99m) is the most employed radionuclide in nuclear imaging diagnostics worldwide for many diseases. The ideal physiochemical properties of Tc-99m (such as half-life and pure gamma energy) make it favorable for Single Photon Emission Computed Tomography (SPECT). In this study, we aim to expand the utilization of Tc-99m radiopharmaceutical toward prostate cancer diagnostics which is currently no FDA approved products and has been intensively examined for a potential candidate. The new formulation for Tc-99m complexation with PSMA-617, a current ligand for radionuclide therapy of prostate cancer with lutetium-177 (Lu-177), has been investigated. Co-complexation with citrate was utilized to improve the labeling efficiency by over 97 %. The stability of the new radiopharmaceutical was in vitro evaluated confirming that the Tc-99m labeled PSMA-617 remained stable for over a single half-life of Tc-99m in normal saline solution and in human serum. The in vivo study in the LNCaP xenografted mouse model confirmed a high selectivity of the new tracer toward prostate cancer.</div></div>","PeriodicalId":255,"journal":{"name":"Bioorganic & Medicinal Chemistry","volume":"118 ","pages":"Article 118058"},"PeriodicalIF":3.3,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142925862","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Discovery of novel xanthohumol C derivatives regulating XRCC2 transcription and expression for the treatment of colorectal cancer 发现调节XRCC2转录和表达的新型黄腐酚C衍生物用于治疗结直肠癌。
IF 3.3 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-01 DOI: 10.1016/j.bmc.2024.118048
Qianqian Zhu , Mengying Wang , Yan Wang , Bin Li , Jiahao Zheng , Yina Hu , Changgui Shi , Dalong Wang , Di Cao , Zhiguo Liu , Xiaohui Zheng , Kun Wang
X-ray repair cross-complementing 2 (XRCC2), a critical protein in homologous recombination (HR), plays a significant role in the occurrence, progression, and drug resistance of colorectal cancer (CRC). In this study, a series of xanthohumol C derivatives were synthesized, and their anticancer activity was evaluated. The results revealed that A33 demonstrated the potent anticancer activity and effectively inhibited the proliferation of CRC cells in vitro. Mechanistic investigations revealed that A33 suppressed the transcription and expression of XRCC2, resulting in cell cycle delay and the accumulation of DNA damage, ultimately leading to cell proliferation inhibition. Furthermore, A33 displayed high safety, favorable bioavailability (F = 37.51 %), and potent tumor growth inhibition in vivo, which highlighting its potential as a candidate for the development of novel anti-CRC therapies.
x射线修复交叉互补2 (XRCC2)是同源重组(homologous recombination, HR)中的关键蛋白,在结直肠癌(colorectal cancer, CRC)的发生、发展和耐药过程中起着重要作用。本研究合成了一系列黄腐酚C衍生物,并对其抗癌活性进行了评价。结果表明,A33具有较强的抗肿瘤活性,能有效抑制结直肠癌细胞的体外增殖。机制研究表明,A33抑制XRCC2的转录和表达,导致细胞周期延迟和DNA损伤积累,最终导致细胞增殖抑制。此外,A33在体内表现出高安全性、良好的生物利用度(F = 37.51%)和有效的肿瘤生长抑制作用,这突出了其作为开发新型抗crc治疗方法的候选药物的潜力。
{"title":"Discovery of novel xanthohumol C derivatives regulating XRCC2 transcription and expression for the treatment of colorectal cancer","authors":"Qianqian Zhu ,&nbsp;Mengying Wang ,&nbsp;Yan Wang ,&nbsp;Bin Li ,&nbsp;Jiahao Zheng ,&nbsp;Yina Hu ,&nbsp;Changgui Shi ,&nbsp;Dalong Wang ,&nbsp;Di Cao ,&nbsp;Zhiguo Liu ,&nbsp;Xiaohui Zheng ,&nbsp;Kun Wang","doi":"10.1016/j.bmc.2024.118048","DOIUrl":"10.1016/j.bmc.2024.118048","url":null,"abstract":"<div><div>X-ray repair cross-complementing 2 (XRCC2), a critical protein in homologous recombination (HR), plays a significant role in the occurrence, progression, and drug resistance of colorectal cancer (CRC). In this study, a series of xanthohumol C derivatives were synthesized, and their anticancer activity was evaluated. The results revealed that <strong>A33</strong> demonstrated the potent anticancer activity and effectively inhibited the proliferation of CRC cells <em>in vitro</em>. Mechanistic investigations revealed that <strong>A33</strong> suppressed the transcription and expression of XRCC2, resulting in cell cycle delay and the accumulation of DNA damage, ultimately leading to cell proliferation inhibition. Furthermore, <strong>A33</strong> displayed high safety, favorable bioavailability (<em>F</em> = 37.51 %), and potent tumor growth inhibition <em>in vivo</em>, which highlighting its potential as a candidate for the development of novel anti-CRC therapies.</div></div>","PeriodicalId":255,"journal":{"name":"Bioorganic & Medicinal Chemistry","volume":"118 ","pages":"Article 118048"},"PeriodicalIF":3.3,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142890848","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
An overview of GPX4-targeting TPDs for cancer therapy gpx4靶向tpd在癌症治疗中的应用综述
IF 3.3 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-01 DOI: 10.1016/j.bmc.2024.118046
Xiaojuan Yang , Liqiang Wu , Shaohong Xu
Ferroptosis is a newly identified form of regulated, non-apoptotic cell death caused by iron-dependent phospholipid peroxidation. Glutathione peroxidase 4 (GPX4) inactivation-induced ferroptosis is an efficient antitumor treatment. Currently, several GPX4 inhibitors have been identified. However, these inhibitors exhibit low selectivity and poor pharmacokinetic properties that preclude their clinical use. Targeted protein degradation (TPD) is an efficient strategy for discovering drugs and has unique advantages over target protein inhibition. Given GPX4′s antitumor effects and the potential of TPD, researchers have explored GPX4-targeting TPDs, which outperform conventional inhibitors in several aspects, such as increased selectivity, strong anti-proliferative effects, overcoming drug resistance, and enhancing drug-like properties. In this review, we comprehensively summarize the progress in GPX4-targeting TPDs. In addition, we reviewed the changes and challenges related to the development of GPX4-targeting TPDs for cancer therapy.
铁凋亡是一种新发现的由铁依赖性磷脂过氧化引起的受调节的非凋亡细胞死亡形式。谷胱甘肽过氧化物酶4 (GPX4)失活诱导铁下垂是一种有效的抗肿瘤治疗方法。目前,已经确定了几种GPX4抑制剂。然而,这些抑制剂表现出低选择性和较差的药代动力学特性,妨碍了它们的临床应用。靶向蛋白降解(Targeted protein degradation, TPD)是一种有效的药物发现策略,与靶向蛋白抑制相比具有独特的优势。鉴于GPX4的抗肿瘤作用和TPD的潜力,研究人员已经探索了以GPX4为靶点的TPD,其在选择性增加、抗增殖作用强、克服耐药和增强药物样特性等方面优于传统抑制剂。本文就gpx4靶向tpd的研究进展进行综述。此外,我们还回顾了gpx4靶向tpd在癌症治疗中的发展变化和挑战。
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引用次数: 0
期刊
Bioorganic & Medicinal Chemistry
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