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Uncovering molecular signatures and pathogenic pathways in myotonic dystrophy type 1 through bioinformatic analysis 通过生物信息学分析揭示1型强直性肌营养不良的分子特征和致病途径
IF 0.7 Q4 GENETICS & HEREDITY Pub Date : 2026-01-14 DOI: 10.1016/j.humgen.2026.201530
Ali Mahmoudi , Sercan Karav , Prashant Kesharwani , Amirhossein Sahebkar

Background

Myotonic dystrophy type 1 (DM1) is a genetic disorder caused by CTG repeat expansion in the DMPK gene, resulting in RNA toxicity and transcriptional dysregulation. Identifying molecular networks is crucial for finding therapeutic targets.

Methods

In this study, we examined gene expression profiles of fibroblasts from patients with DM1 and healthy individuals using the GSE173359 dataset. Protein-protein interaction (PPI) networks were created using STRING and Cytoscape. Functional enrichment analysis was conducted using KEGG, Reactome, and Gene Ontology. Additionally, miRNA-mRNA interactions were analyzed with TarBase, and drug-gene associations were explored for potential repurposing using DGIdb.

Results

A total of 358 DEGs were identified, with 182 upregulated and 176 downregulated genes. Hub genes such as Toll-Like Receptor 4 (TLR4), Vascular Cell Adhesion Molecule 1 (VCAM1), Matrix Metallopeptidase 1 (MMP1), Prostaglandin-Endoperoxide Synthase 2 (PTGS2), Secreted Phosphoprotein 1 (SPP1), and Fibroblast Growth Factor 13 (FGF13) were found to be associated with immune signaling and tissue remodeling. Enrichment analysis indicated significant activation of IL-17, TNF, and NF-κB signaling pathways, cytokine-cytokine receptor interactions, and extracellular matrix organization. Additionally, developmental processes involving HOX genes were enriched, suggesting abnormal morphogenetic signaling. miRNA analysis highlighted hsa-miR-15a-5p and hsa-miR-34a-5p as key regulators of multiple hub genes. Drug interaction analysis identified potential candidates like Eritoran (TLR4 inhibitor) and Etoricoxib (PTGS2 inhibitor) for further investigation.

Conclusion

This integrative bioinformatics approach offers new insights into the molecular pathology of DM1, emphasizing inflammation, Extracellular Matrix (ECM) remodeling, and developmental reprogramming as key processes. It also suggests potential miRNAs and repurposed drugs for future therapeutic approaches.
肌强直性营养不良1型(DM1)是一种由DMPK基因CTG重复扩增引起的遗传性疾病,导致RNA毒性和转录失调。识别分子网络对于寻找治疗靶点至关重要。方法在本研究中,我们使用GSE173359数据集检测DM1患者和健康个体成纤维细胞的基因表达谱。利用STRING和Cytoscape构建蛋白-蛋白相互作用(PPI)网络。使用KEGG、Reactome和Gene Ontology进行功能富集分析。此外,使用TarBase分析了miRNA-mRNA的相互作用,并使用DGIdb探索了药物-基因关联的潜在再利用。结果共鉴定出358个基因,其中上调182个,下调176个。中心基因如toll样受体4 (TLR4)、血管细胞粘附分子1 (VCAM1)、基质金属肽酶1 (MMP1)、前列腺素内过氧化物合成酶2 (PTGS2)、分泌磷酸化蛋白1 (SPP1)和成纤维细胞生长因子13 (FGF13)被发现与免疫信号传导和组织重塑相关。富集分析表明IL-17、TNF和NF-κB信号通路、细胞因子-细胞因子受体相互作用和细胞外基质组织显著活化。此外,涉及HOX基因的发育过程丰富,表明形态发生信号异常。miRNA分析强调hsa-miR-15a-5p和hsa-miR-34a-5p是多个枢纽基因的关键调节因子。药物相互作用分析确定了潜在的候选药物,如itoran (TLR4抑制剂)和Etoricoxib (PTGS2抑制剂),供进一步研究。结论该综合生物信息学方法为DM1的分子病理学提供了新的见解,强调炎症、细胞外基质(ECM)重塑和发育重编程是DM1的关键过程。它还为未来的治疗方法提供了潜在的mirna和重新利用的药物。
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引用次数: 0
Reciprocal regulation of miR-657 and IL-37 and its association with CTLA-4 dysregulation in Pediatric asthma: Diagnostic implications 儿童哮喘中miR-657和IL-37的相互调节及其与CTLA-4失调的关系:诊断意义
IF 0.7 Q4 GENETICS & HEREDITY Pub Date : 2026-01-14 DOI: 10.1016/j.humgen.2026.201532
Ghanyia Jasim Shanyoor , Rand Moushtaq Taleb , Rawan Ahmed Nijeeb , Hiba Muneer Abdel Hassan Al-Khafaji , Maryam Qasim Mohammed

Background

Asthma is a chronic inflammatory disease of the airways, in which dysregulation of immune mediators contributes to disease pathogenesis. Interleukin-37 (IL-37) and cytotoxic T-lymphocyte-associated protein 4 (CTLA-4) are key immunoregulatory molecules, while miR-657 has been implicated in modulating IL-37 expression in inflammatory conditions.

Objectives

This study aimed to assess the expression levels of IL-37, CTLA-4, and miR-657 in asthma patients compared with healthy individuals, and to evaluate their diagnostic relevance through Receiver Operating Characteristic (ROC) curve analysis and logistic regression, without the intention of developing a predictive model or examining molecular interactions among these parameters.

Methods

This study included 90 participants, comprising 45 asthma patients and 45 age- and sex-matched healthy controls. Peripheral blood samples were analyzed to measure total IgE (Rate Scattering Turbidimetric Method), IL-37 mRNA expression (qRT-PCR), miR-657 levels (qRT-PCR), and circulating CTLA-4 concentrations (ELISA). Statistical evaluation involved ROC curve analysis to assess diagnostic performance and logistic regression to determine associations with asthma risk.

Results

Compared with healthy controls, asthma patients exhibited significantly lower IL-37 expression (fold change: 0.82 ± 0.2 vs. 1.12 ± 0.4) and reduced serum CTLA-4 concentrations (45.67 ± 19.92 vs. 73.75 ± 26.11 ng/mL), whereas miR-657 expression was significantly increased (fold change: 1.59 ± 0.7 vs. 1.07 ± 0.3). ROC curve analysis demonstrated that IL-37 (AUC = 0.771), CTLA-4 (AUC = 0.807), and miR-657 (AUC = 0.763) possess promising diagnostic accuracy, with substantial sensitivity and specificity. Logistic regression analysis confirmed that decreased IL-37 (OR = 0.11) and CTLA-4 (OR = 0.96), as well as elevated miR-657 (OR = 9.74), were significantly associated with increased asthma risk (overall model AUC = 0.890), supporting their relevance as diagnostic indicators.

Conclusion

The reciprocal regulation of miR-657 and IL-37, alongside diminished CTLA-4, points to a disrupted immunoregulatory axis in asthma. Collectively, these findings highlight the potential utility of miR-657, IL-37, and CTLA-4 as diagnostic signatures for asthma, supporting their relevance in disease assessment and monitoring.
哮喘是一种气道慢性炎症性疾病,其中免疫介质的失调参与了疾病的发病机制。白细胞介素-37 (IL-37)和细胞毒性t淋巴细胞相关蛋白4 (CTLA-4)是关键的免疫调节分子,而miR-657参与调节炎症条件下IL-37的表达。目的本研究旨在评估IL-37、CTLA-4和miR-657在哮喘患者中的表达水平,并通过受试者工作特征(ROC)曲线分析和logistic回归评估其诊断相关性,而无意建立预测模型或检查这些参数之间的分子相互作用。方法本研究纳入90名受试者,包括45名哮喘患者和45名年龄和性别匹配的健康对照。分析外周血样本,测定总IgE(率散射浊度法)、IL-37 mRNA表达(qRT-PCR)、miR-657水平(qRT-PCR)和循环CTLA-4浓度(ELISA)。统计评价包括ROC曲线分析来评估诊断表现和逻辑回归来确定与哮喘风险的关系。结果与健康对照组相比,哮喘患者IL-37表达显著降低(倍数变化:0.82±0.2∶1.12±0.4),血清CTLA-4浓度显著降低(倍数变化:45.67±19.92∶73.75±26.11 ng/mL), miR-657表达显著升高(倍数变化:1.59±0.7∶1.07±0.3)。ROC曲线分析显示,IL-37 (AUC = 0.771)、CTLA-4 (AUC = 0.807)、miR-657 (AUC = 0.763)具有较好的诊断准确性,具有较高的敏感性和特异性。Logistic回归分析证实,IL-37 (OR = 0.11)和CTLA-4 (OR = 0.96)降低以及miR-657 (OR = 9.74)升高与哮喘风险增加显著相关(总模型AUC = 0.890),支持其作为诊断指标的相关性。结论miR-657和IL-37的相互调节,以及CTLA-4的减少,指向哮喘免疫调节轴的破坏。总的来说,这些发现强调了miR-657、IL-37和CTLA-4作为哮喘诊断特征的潜在效用,支持它们在疾病评估和监测中的相关性。
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引用次数: 0
Integrative transcriptomic profiling of differentially expressed genes to identify potential biomarkers and repurposable therapeutic candidates in idiopathic pulmonary fibrosis 差异表达基因的整合转录组学分析,以确定特发性肺纤维化的潜在生物标志物和可重新利用的治疗候选者
IF 0.7 Q4 GENETICS & HEREDITY Pub Date : 2026-01-13 DOI: 10.1016/j.humgen.2026.201533
Bhavsar Mauli Chirag , Potnuri Vishnu Priyanka , Subhashini
Idiopathic Pulmonary Fibrosis (IPF) is a chronic, progressive interstitial lung disease characterized by irreversible lung scarring with limited therapeutic options, poor prognosis, and high mortality rate. The present study aimed to elucidate the potential diagnostic biomarkers and therapeutic targets for IPF using an integrative bioinformatics and systems biology framework. Differential gene expression analysis of publicly available transcriptomic datasets (GSE199152 and GSE199949) identified key differentially expressed genes (DEGs) involved predominantly in extracellular matrix organization, immune regulation, and fibrotic signaling pathways. Construction of protein–protein interaction (PPI) networks followed by cytoHubba analysis identified five core hub genes (ITGA2, ITGB3, ITGA11, COL1A1, and COL1A2), whose diagnostic potential was evaluated in silico using receiver operating characteristic (ROC) curve analysis. To strengthen the robustness of these biomarker candidates, an independent external dataset (GSE92592) was used for validation, where all five hub genes demonstrated high AUC values, confirming their reproducible diagnostic potential across cohorts. Gene regulatory network analysis highlighted critical transcription factors (SP1, RELA, NFKB1) and microRNAs (miR-29c, miR-21, miR-155, miR-30a) regulating these hub genes, emphasizing the complex transcriptional and post-transcriptional regulation underlying IPF. In parallel, drug repurposing analysis through DrugBank data, ADMET profiling, and molecular docking identified favorable interactions between the hub proteins and both approved (Nintedanib, Pirfenidone) and investigational drugs (Omipalisib, Olitigaltin, Suplatast, Tipelukast). Notably, Omipalisib and Olitigaltin exhibited favorable binding affinities, hydrogen bond interactions, and pharmacokinetic properties, suggesting potential therapeutic value in IPF management. Collectively, this integrative transcriptomics approach provides novel insights into IPF pathogenesis and highlights potential biomarkers and therapeutic candidates that may be further validated experimentally.
特发性肺纤维化(IPF)是一种慢性进行性间质性肺疾病,其特征是不可逆的肺瘢痕形成,治疗选择有限,预后差,死亡率高。本研究旨在利用综合生物信息学和系统生物学框架阐明IPF的潜在诊断生物标志物和治疗靶点。对公开的转录组数据集(GSE199152和GSE199949)进行差异基因表达分析,确定了主要参与细胞外基质组织、免疫调节和纤维化信号通路的关键差异表达基因(deg)。构建蛋白-蛋白相互作用(PPI)网络并进行cytoHubba分析,鉴定出5个核心枢纽基因(ITGA2、ITGB3、ITGA11、COL1A1和COL1A2),并利用受试者工作特征(ROC)曲线分析对其诊断潜力进行计算机评估。为了加强这些候选生物标志物的稳健性,使用了一个独立的外部数据集(GSE92592)进行验证,其中所有五个中心基因都显示出高AUC值,证实了它们在队列中的可重复性诊断潜力。基因调控网络分析强调了关键转录因子(SP1、RELA、NFKB1)和调控这些枢纽基因的microrna (miR-29c、miR-21、miR-155、miR-30a),强调了IPF背后复杂的转录和转录后调控。与此同时,通过DrugBank数据、ADMET分析和分子对接进行的药物再利用分析发现,枢纽蛋白与已批准药物(尼达尼布、吡非尼酮)和研究药物(奥米帕利西布、奥利替高汀、Suplatast、Tipelukast)之间存在有利的相互作用。值得注意的是,Omipalisib和oligigaltin表现出良好的结合亲和力、氢键相互作用和药代动力学特性,这表明它们在IPF治疗中具有潜在的治疗价值。总的来说,这种整合转录组学方法为IPF的发病机制提供了新的见解,并强调了可能进一步实验验证的潜在生物标志物和治疗候选物。
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引用次数: 0
Genetic polymorphisms associated with type 2 diabetes in Morocco: A systematic literature review 遗传多态性与2型糖尿病在摩洛哥:系统的文献综述
IF 0.7 Q4 GENETICS & HEREDITY Pub Date : 2026-01-10 DOI: 10.1016/j.humgen.2026.201531
Atmane Ait baha , Zineb Kahli , Hind Idrissi Hassani , Mouna Habbane , Sofia Semlali , Otmane El Brini , Bouchra Benazzouz , Nawal El Ansari , Omar Akhouayri
This systematic literature review (SLR) investigated genetic polymorphisms associated with Type 2 Diabetes Mellitus (T2DM) in the Moroccan population by analyzing original research articles from multiple electronic databases, including PubMed, Scopus, ScienceDirect, Web of Science, and EBSCO. We identified studies that examined 52 genes and 90 single nucleotide polymorphisms. These polymorphisms are distributed across critical genes implicated in T2DM susceptibility. This review revealed several significant genetic associations, with TCF7L2 emerging as the gene most strongly associated with T2DM susceptibility in the Moroccan population. Other important genes identified included CYP11B2, FHL2, ADIPOQ, TNF-A, and IGF2BP2, which were associated with T2DM risk to varying degrees. The analysis revealed the involvement of multiple pathways, including inflammatory processes, insulin secretion, and glucose homeostasis in T2DM pathogenesis. These findings provide a comprehensive overview of the genetic architecture underlying T2DM in the Moroccan population, offering valuable insights for future research and the potential development of personalized therapeutic approaches. This review represents a significant step toward understanding population-specific genetic factors of T2DM and their implications for clinical practice.
本系统文献综述(SLR)通过分析来自多个电子数据库(包括PubMed、Scopus、ScienceDirect、Web of Science和EBSCO)的原始研究文章,调查了摩洛哥人群中与2型糖尿病(T2DM)相关的遗传多态性。我们鉴定了52个基因和90个单核苷酸多态性的研究。这些多态性分布在与T2DM易感性相关的关键基因中。这篇综述揭示了几个重要的遗传关联,其中TCF7L2是与摩洛哥人群中2型糖尿病易感性最密切相关的基因。其他鉴定的重要基因包括CYP11B2、FHL2、ADIPOQ、TNF-A和IGF2BP2,这些基因与T2DM风险有不同程度的关联。分析揭示了T2DM发病机制涉及多种途径,包括炎症过程、胰岛素分泌和葡萄糖稳态。这些发现为摩洛哥人群中T2DM的遗传结构提供了一个全面的概述,为未来的研究和个性化治疗方法的潜在发展提供了有价值的见解。这篇综述是了解2型糖尿病人群特异性遗传因素及其对临床实践意义的重要一步。
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引用次数: 0
Exploring non -coding RNAs contribution to neural tube defects 探索非编码rna在神经管缺陷中的作用
IF 0.7 Q4 GENETICS & HEREDITY Pub Date : 2026-01-05 DOI: 10.1016/j.humgen.2025.201528
Zahraa Isam Jameel
This review paper covers the diversified role of non-coding RNAs (ncRNAs) in the formation of neural tube defects (NTDs). NTDs are a group of serious birth defects that arise when the neural tube does not close normally during the early embryonic development. Although both genetic and environmental factors are known to cause neural tube defects (NTDs), the role of non-coding RNAs (ncRNAs) in the molecular mechanisms is becoming more evident. In this article, the different kinds of ncRNAs, such as microRNAs (miRNAs), long non-coding RNAs (lncRNAs), and circular RNAs (circRNAs), and their particular roles during neural tube closure will be discussed, focusing on their prospects as therapeutic targets for NTD prevention or treatment. Studies have revealed the role of specific microRNAs, such as members in the miR-17–92 and miR-100 clusters, in the regulation of essential processes, including the proliferation, differentiation, and death of neural precursor cells. The disruption of critical signaling, such as folate metabolism and planar cell polarity, affects these processes. Moreover, there has now become evidence on the role of lncRNAs and circRNAs in the interaction with chromatin-modification complexes, influencing the epigenetic profiles required during neural tube closure, and the regulation of gene expression through the ceRNA action. The developing embryo, whose ncRNA network has the disrupted ncRNA network, has an increased risk of developing the defects in the neural tubes. conclusion, NTD ncRNs represent an important area in the understanding and diagnosis of neural tube defects. The use of ncRNs, particularly some types of microRNs, long ncRNs, and circRNs, has proven that they are far from the “noise” transcribed in the genome. In fact, they play vital roles in the regulation of genes related to the closing of the neural tube. When ncRNs, including some microRNs, long ncRNs, and circRNs, malfunction, they disrupt vital signaling, resulting in an increased risk of the development of NTDs in the embryo. ncRNs link genetic risk and environment, contributing to the increased incidence that was unaccounted for. Future studies, therefore, shall focus on the use of ncRNs in the biomarkers needed in detecting the risk factors and risk of NTDs, the use of long ncRNs and circRNs, and the development of strategies in the prevention of congenital defects.
本文综述了非编码rna (ncRNAs)在神经管缺陷(NTDs)形成中的多种作用。ntd是一组严重的出生缺陷,当神经管在早期胚胎发育期间不能正常关闭时出现。虽然已知遗传和环境因素都可导致神经管缺陷(NTDs),但非编码rna (ncRNAs)在分子机制中的作用越来越明显。本文将讨论不同种类的ncRNAs,如microRNAs (miRNAs)、长链非编码rna (lncRNAs)和环状rna (circRNAs),以及它们在神经管闭合过程中的特殊作用,重点讨论它们作为NTD预防或治疗的治疗靶点的前景。研究揭示了特定的microrna,如miR-17-92和miR-100簇中的成员,在调节基本过程中的作用,包括神经前体细胞的增殖、分化和死亡。关键信号的破坏,如叶酸代谢和平面细胞极性,影响这些过程。此外,目前已有证据表明lncrna和circrna与染色质修饰复合物相互作用,影响神经管闭合过程中所需的表观遗传谱,并通过ceRNA作用调节基因表达。发育中的胚胎,其ncRNA网络有被破坏的ncRNA网络,在神经管中发生缺陷的风险增加。结论NTD ncrn是神经管缺损认识和诊断的重要领域。ncrn的使用,特别是某些类型的microrn、long ncrn和circrn,已经证明它们与基因组转录的“噪音”相去甚远。事实上,它们在调节与神经管闭合相关的基因中起着至关重要的作用。当ncrn,包括一些microrn、long ncrn和circrn发生故障时,它们会破坏生命信号,导致胚胎中ntd发育的风险增加。ncrn将遗传风险和环境联系起来,导致了未被解释的发病率增加。因此,未来的研究应侧重于ncrn在检测ntd危险因素和风险所需的生物标志物中的应用,长ncrn和环状ncrn的使用,以及先天性缺陷预防策略的制定。
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引用次数: 0
In utero gene therapy: Pioneering diagnostic and therapeutic technologies 子宫内基因治疗:开创性的诊断和治疗技术
IF 0.7 Q4 GENETICS & HEREDITY Pub Date : 2025-12-30 DOI: 10.1016/j.humgen.2025.201527
Shalmoli Seth , Malini Sen , Souvik Banerjee , Ritamay Sau , Somasree Ray
Advancements in prenatal imaging, molecular diagnostics, and genetic screening have transformed the management of congenital diseases, enabling early identification and treatment in utero. These innovations facilitate medical interventions before clinical symptoms arise, improving outcomes and reducing disease severity. Advanced genetic testing of blood, tissue, and other biological samples, combined with techniques such as fluorescence in situ hybridization and chromosomal microarray analysis, allows precise detection and classification of monogenic, mitochondrial, chromosomal, and multifactorial disorders. Emerging in utero therapies, particularly gene therapy, leverage the fetus's unique developmental properties to provide targeted and minimally invasive treatment for structural and genetic abnormalities. However, key challenges remain, such as ensuring biocompatibility and achieving efficient intracellular transgene delivery. Progress in viral and non-viral delivery systems and advancements in gene editing technologies have shown potential in overcoming these obstacles, paving the way for clinical translation. Nanotechnology further enhances these efforts by providing customizable, stable platforms for stage-specific and tissue-targeted interventions, broadening the scope of successful in utero treatments. Collectively, these advances in prenatal diagnostics and therapeutic strategies present an opportunity to address congenital disorders at their origin, significantly improving longterm health outcomes and quality of life by intervening at the earliest stages of development.
产前成像、分子诊断和遗传筛查方面的进步已经改变了先天性疾病的管理,能够在子宫内早期识别和治疗。这些创新有助于在临床症状出现之前进行医疗干预,改善结果并降低疾病严重程度。血液、组织和其他生物样本的先进基因检测,结合荧光原位杂交和染色体微阵列分析等技术,可以精确检测和分类单基因、线粒体、染色体和多因素疾病。新兴的子宫疗法,特别是基因疗法,利用胎儿独特的发育特性,为结构和遗传异常提供靶向和微创治疗。然而,关键的挑战仍然存在,如确保生物相容性和实现有效的细胞内转基因递送。病毒和非病毒传递系统的进展以及基因编辑技术的进步显示出克服这些障碍的潜力,为临床转化铺平了道路。纳米技术进一步加强了这些努力,为特定阶段和组织靶向干预提供了可定制的、稳定的平台,扩大了子宫内治疗成功的范围。总的来说,产前诊断和治疗战略方面的这些进展为从根源上解决先天性疾病提供了机会,通过在发育的早期阶段进行干预,显著改善长期健康结果和生活质量。
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引用次数: 0
The role of rs10414846, rs10421768, rs855791 and rs4820268 polymorphisms in iron-regulatory genes among Malaysian young adults rs10414846、rs10421768、rs855791和rs4820268多态性在马来西亚年轻人铁调控基因中的作用
IF 0.7 Q4 GENETICS & HEREDITY Pub Date : 2025-12-24 DOI: 10.1016/j.humgen.2025.201526
Jin-Rou Liew , Sing-Yan Looi , Keat-Wei Loo , Lai-Kuan Teh
Genetic variants involved in iron-regulatory pathways are important determinants of individual susceptibility to iron deficiency or anaemia. Genetic determinants including the hepcidin antimicrobial peptide (HAMP) and transmembrane serine protease 6 (TMPRSS6) genes play crucial roles in systemic iron regulation. This study investigated the relationship of four single nucleotide polymorphisms (SNPs) [HAMP rs10414846 (C > T), HAMP rs10421768 (A > G), TMPRSS6 rs855791 (A > G) and TMPRSS6 rs4820268 (G > A)] with haemoglobin (Hb), plasma hepcidin and serum iron levels among Malaysian young adults. A total of 183 unrelated participants aged 18 to 35 years were recruited. Genotyping was conducted using tetra-primer amplification refractory mutation system-polymerase chain reaction (Tetra-ARMS-PCR). Plasma hepcidin concentration and serum iron levels were detected using a human hepcidin ELISA kit and an iron colorimetric assay, respectively. Statistical analyses were performed with the Kruskal-Wallis and Mann-Whitney U tests, followed by general linear model (GLM) adjustments for covariates. Gene-gene interactions were analysed using the Pearson Chi-square (χ2) test. A significant difference was observed between TMPRSS6 rs855791 and plasma hepcidin concentration after adjustment (p = 0.039), where G allele carriers exhibited lower hepcidin concentration compared with AA homozygotes. No significant differences were observed for the other polymorphisms. Linkage disequilibrium (LD) analysis revealed strong intragenic correlations within HAMP and TMPRSS6, but no intergenic association. These findings highlighted TMPRSS6's regulatory role in iron homeostasis. This study provides the first population-specific evidence among Malaysian young adults, offering baseline genetic data to support future large-scale and personalised anaemia research.
参与铁调控途径的遗传变异是个体对缺铁或贫血易感性的重要决定因素。包括hepcidin抗菌肽(HAMP)和跨膜丝氨酸蛋白酶6 (TMPRSS6)基因在内的遗传决定因素在全身铁调控中起着至关重要的作用。本研究调查了马来西亚年轻人中四个单核苷酸多态性(snp) [HAMP rs10414846 (C >; T), HAMP rs10421768 (A >; G), TMPRSS6 rs855791 (A >; G)和TMPRSS6 rs4820268 (G >; A)]与血红蛋白(Hb),血浆hepcidin和血清铁水平的关系。总共招募了183名年龄在18到35岁之间的无血缘关系的参与者。采用四引物扩增难解突变系统-聚合酶链反应(tetrao - arms - pcr)进行基因分型。血浆hepcidin浓度和血清铁水平分别采用人hepcidin ELISA试剂盒和铁比色法检测。采用Kruskal-Wallis检验和Mann-Whitney U检验进行统计分析,然后对协变量进行一般线性模型(GLM)调整。采用Pearson χ2检验分析基因-基因相互作用。调整后的TMPRSS6 rs855791与血浆hepcidin浓度差异有统计学意义(p = 0.039),其中G等位基因携带者的hepcidin浓度低于AA纯合子。其他多态性无显著性差异。连锁不平衡(LD)分析显示,HAMP和TMPRSS6基因内相关性强,但基因间相关性不强。这些发现强调了TMPRSS6在铁稳态中的调节作用。这项研究在马来西亚年轻人中提供了第一个特定人群的证据,为支持未来大规模和个性化贫血研究提供了基线遗传数据。
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引用次数: 0
Promoter methylation signature of SLC16A11 gene reavels poor prognosis in head and neck squamous cell carcinoma SLC16A11基因启动子甲基化特征揭示头颈部鳞状细胞癌预后不良
IF 0.7 Q4 GENETICS & HEREDITY Pub Date : 2025-12-16 DOI: 10.1016/j.humgen.2025.201525
Sonali Awasthi , Tejulal Prasad Chaurasia , Narendra Verma , Satakshi Chaturvedi , Anuradha Kalani , Sudhir Kumar Awasthi , Pramod K. Yadav , Abhijeet Singh , Gyanendra Singh , Rajeev Mishra
Solute carrier (SLC) transporters, which are essential for transporting various metabolites such as carbohydrates, proteins, lipids, and nucleic acids, are often altered in tumor cells to meet their high energy demands. Given the critical role of the SLC transporters in driving metabolism these transporters represent a promising target for cancer therapies and the development of biomarkers to track tumor development and progression. The SLC gene family comprises 14 members, designated SLC16A1 to SLC16A14, which have been implicated in various types of cancer. Their diverse expression patterns are often associated with a poor prognosis across multiple cancers. However, the prognostic significance and mechanisms of the distinct members of the SLC16A gene family in human head and neck squamous cell carcinoma (HNSC) remain unclear. In this study, we explored the SLC16A family members in HNSC using various online genomic databases, including GEPIA2 and TIMER2, to assess the prognostic significance of SLC16A11. Our findings revealed that the expression of the SLC16A11 gene was significantly lower in HNSC tissues compared to normal tissues. We identified that hyper-methylation of the SLC16A11 promoter was associated with decreased expression levels and a poor prognosis in HNSCC, likely due to increased immune infiltration of various immune cells. This study emphasizes the potential of SLC16A11 as a prognostic marker for head and neck squamous cell carcinoma (HNSC) and identifies it as an epigenetically regulated tumor suppressor gene. Overall our research highlights need for further investigation into SLC16A11 as a key metabolic transporter and its potential application in HNSC therapeutics.
溶质载体(SLC)转运蛋白是运输碳水化合物、蛋白质、脂质和核酸等各种代谢物所必需的,在肿瘤细胞中经常发生改变以满足其高能量需求。鉴于SLC转运蛋白在驱动代谢中的关键作用,这些转运蛋白代表了癌症治疗和追踪肿瘤发生和进展的生物标志物的发展的有希望的靶标。SLC基因家族包括14个成员,从SLC16A1到SLC16A14,与多种类型的癌症有关。它们不同的表达模式通常与多种癌症的不良预后有关。然而,SLC16A基因家族不同成员在人头颈部鳞状细胞癌(HNSC)中的预后意义和机制尚不清楚。在这项研究中,我们利用各种在线基因组数据库,包括GEPIA2和TIMER2,探索了SLC16A家族成员在HNSC中,以评估SLC16A11的预后意义。我们的研究结果显示,SLC16A11基因在HNSC组织中的表达明显低于正常组织。我们发现SLC16A11启动子的超甲基化与HNSCC中表达水平降低和预后不良相关,可能是由于各种免疫细胞的免疫浸润增加。本研究强调了SLC16A11作为头颈部鳞状细胞癌(HNSC)预后标志物的潜力,并将其鉴定为一种表观遗传调控的肿瘤抑制基因。总之,我们的研究强调需要进一步研究SLC16A11作为一个关键的代谢转运蛋白及其在HNSC治疗中的潜在应用。
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引用次数: 0
Connection between epithelial-mesenchymal transition and cancer stem cells and the potential therapeutic strategies 上皮-间质转化与癌症干细胞的关系及潜在的治疗策略
IF 0.7 Q4 GENETICS & HEREDITY Pub Date : 2025-12-11 DOI: 10.1016/j.humgen.2025.201524
Jingxuan Xu , Jiaxin Geng , Jingyuan Ma , Yaofan Lu , Fuyuan Ma , Yuan Qin , Biao Huang
Cancer prevalence is on the rise globally. Early detection, targeted treatments, immunotherapies, and routine chemotherapies are vital for cancer management and patient survival extension, yet complete cancer eradication remains a significant challenge. The epithelial-to-mesenchymal transition (EMT) and cancer stem cells (CSCs) are central to cancer cell metastasis, apoptosis resistance, tumor relapse, and drug resistance. This review focuses on the molecular mechanisms of EMT and CSCs, their interdependencies, the implicated signaling cascades, and the function of microRNA (miRNA) in EMT and CSC initiation regulation. EMT can endow cancer cells with mesenchymal characteristics and the capacity to transition into a CSC state; notably, CSCs can also reinforce EMT progression through secreting cytokines like transforming growth factor-β (TGF-β), forming a reciprocal regulatory loop that sustains tumor aggressiveness. These processes are intricately linked to the TGF-β, Wnt, and Notch signaling pathways, as well as miRNA expression. Advancing cancer treatment modalities and pinpointing novel therapeutic targets necessitate deeper exploration of the EMT-CSC connection. Consequently, crafting therapeutic approaches that target EMT or CSCs holds promise for enhancing cancer treatment efficacy.
全球癌症患病率呈上升趋势。早期发现、靶向治疗、免疫治疗和常规化疗对癌症管理和延长患者生存至关重要,但完全根除癌症仍然是一个重大挑战。上皮-间质转化(EMT)和癌症干细胞(CSCs)是癌细胞转移、细胞凋亡抵抗、肿瘤复发和耐药的核心。本文就EMT和CSC的分子机制、相互依赖性、相关信号级联以及microRNA (miRNA)在EMT和CSC起始调控中的作用进行综述。EMT可以使癌细胞具有间充质特性,并具有向CSC状态转变的能力;值得注意的是,CSCs还可以通过分泌转化生长因子-β (TGF-β)等细胞因子来促进EMT的进展,形成一个维持肿瘤侵袭性的互惠调节回路。这些过程与TGF-β、Wnt和Notch信号通路以及miRNA表达有着复杂的联系。推进癌症治疗模式和确定新的治疗靶点需要对EMT-CSC连接进行更深入的探索。因此,制定针对EMT或CSCs的治疗方法有望提高癌症治疗效果。
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引用次数: 0
Hippo/YAP Signaling in cataract pathogenesis: Mechanistic insights and emerging therapeutic strategies 白内障发病机制中的Hippo/YAP信号:机制见解和新兴治疗策略
IF 0.7 Q4 GENETICS & HEREDITY Pub Date : 2025-12-08 DOI: 10.1016/j.humgen.2025.201522
Meraj Khan, Lokesh Verma
Cataracts represent a primary cause of visual impairment, arising from the opacification of the eye's crystalline lens. These can be categorized etiologically as congenital, age-related, or secondary, and clinically as cortical or nuclear, based on the location of the opacification. The Hippo/YAP signaling pathway is a fundamental cellular mechanism that governs lens epithelial cell (LEC) behavior, and its dysregulation is a key factor in cataract formation. Abnormalities in this pathway disrupt LEC proliferation and differentiation, leading to lens opacification. The effector protein YAP plays a crucial role in lens pathology, including posterior capsule opacification (PCO) and epithelial-mesenchymal transition (EMT). To address this, current research is exploring novel therapies that target the Hippo/YAP pathway to counteract these processes. These innovative approaches include using small molecule inhibitors, such as verteporfin, to disrupt YAP's function, as well as RNA-based therapies that target non-coding RNAs like lncRNA-MIAT to suppress LEC proliferation. Furthermore, gene-editing technologies like CRISPR/Cas9 are being explored to correct genetic defects associated with cataracts, such as mutations in GJA8. These molecularly targeted interventions represent a paradigm shift in cataract management, aiming to prevent the condition and improve patient outcomes. However, thorough validation is necessary to ensure their safety and efficacy for clinical application.
白内障是由眼睛晶状体混浊引起的,是视力受损的主要原因。根据混浊的位置,在病因学上可分为先天性、年龄相关性或继发性,在临床上可分为皮质性或核性。Hippo/YAP信号通路是控制晶状体上皮细胞(LEC)行为的基本细胞机制,其失调是白内障形成的关键因素。该通路的异常破坏LEC的增殖和分化,导致晶状体混浊。效应蛋白YAP在晶状体病理中起着至关重要的作用,包括后囊膜混浊(PCO)和上皮-间质转化(EMT)。为了解决这个问题,目前的研究正在探索针对Hippo/YAP通路的新疗法来抵消这些过程。这些创新的方法包括使用小分子抑制剂,如维替波芬,来破坏YAP的功能,以及靶向非编码rna(如lncRNA-MIAT)的基于rna的疗法来抑制LEC增殖。此外,人们正在探索CRISPR/Cas9等基因编辑技术,以纠正与白内障相关的遗传缺陷,例如GJA8突变。这些分子靶向干预措施代表了白内障管理的范式转变,旨在预防病情和改善患者的预后。然而,为了确保其临床应用的安全性和有效性,需要进行彻底的验证。
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引用次数: 0
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