首页 > 最新文献

Human Gene最新文献

英文 中文
Association of DVWA (rs7639618) gene polymorphisms with knee osteoarthritis susceptibility: An updated systematic review and meta-analysis DVWA (rs7639618)基因多态性与膝骨关节炎易感性的关联:一项最新的系统综述和荟萃分析
IF 0.7 Q4 GENETICS & HEREDITY Pub Date : 2025-11-28 DOI: 10.1016/j.humgen.2025.201519
Annamalai R , Venkatramanaiah C , Marimuthu Raja , Santhosh Kumar Yasam , Sujhithra A , Catherine Rexy , Vignesh Narasimman , D. Danis Vijay

Background & aim

Knee osteoarthritis (KOA)1 is a common degenerative joint disease characterized by progressive cartilage breakdown that leads to pain and reduced mobility. Although genetic predisposition including the double von Willebrand factor A (DVWA; rs7639618) gene polymorphism has been implicated in KOA, previous case–control studies have reported inconsistent findings. This updated meta-analysis aims to clarify the association between the DVWA (rs7639618) gene polymorphism and KOA susceptibility.

Materials & methods

A systematic search was performed in Pub Med, Web of Science, Science Direct, and Google Scholar for case–control studies published up to June 2025. Eligible studies reported genotype and allele distributions for rs7639618 in KOA cases and controls. Study quality was assessed using the Newcastle–Ottawa Scale (NOS).2 Odds ratios (ORs)3 with 95 % confidence intervals (CIs)4 were calculated under allele, recessive, dominant, and over-dominant models. Heterogeneity was evaluated using the Q test and I2 statistic, and random- or fixed-effects models were applied accordingly. Subgroup analyses were conducted by ethnicity, and publication bias was assessed with funnel plots and Egger's test. Sensitivity analysis was carried out by excluding each study.

Results

Thirteen studies comprising 7110 KOA cases and 6931 controls were included. Pooled analyses across all genetic models showed no statistically significant association between rs7639618 and KOA susceptibility. For the allele contrast model, the overall OR was 1.03 (95 % CI: 0.90–1.19); for the recessive model, OR was 1.06 (95 % CI: 0.90–1.25); for the dominant model, OR was 1.08 (95 % CI: 0.85–1.38); and for the over-dominant model, OR was 0.98 (95 % CI: 0.91–1.05). Subgroup analyses revealed no increased risk in either Asian or Caucasian populations. Sensitivity analysis confirmed the stability of the results, and no significant publication bias was detected.

Conclusion

The findings of this meta-analysis suggest that the DVWA (rs7639618) polymorphism is not significantly associated with KOA susceptibility in the overall population or within specific ethnic groups. Despite the rigorous methodology and comprehensive analysis, the presence of substantial heterogeneity in some genetic models underscores the need for further well-designed, large-scale studies across diverse populations.
膝关节骨关节炎(KOA)1是一种常见的退行性关节疾病,其特征是进行性软骨破裂,导致疼痛和活动能力降低。虽然包括双血管性血液病因子A (DVWA; rs7639618)基因多态性在内的遗传易感性与KOA有关,但先前的病例对照研究报告的结果不一致。这项更新的荟萃分析旨在阐明DVWA (rs7639618)基因多态性与KOA易感性之间的关系。材料&方法系统检索Pub Med、Web of Science、Science Direct和b谷歌Scholar,检索截至2025年6月发表的病例对照研究。符合条件的研究报告了rs7639618在KOA病例和对照组中的基因型和等位基因分布。采用纽卡斯尔-渥太华量表(NOS)评估研究质量在等位基因、隐性、显性和过显性模型下计算优势比(ORs)和95%置信区间(ci)。采用Q检验和I2统计量评估异质性,并相应采用随机或固定效应模型。按种族进行亚组分析,用漏斗图和Egger检验评估发表偏倚。通过排除每项研究进行敏感性分析。结果纳入13项研究,7110例KOA病例和6931例对照。所有遗传模型的汇总分析显示,rs7639618与KOA易感性之间没有统计学意义上的关联。对于等位基因对比模型,总体OR为1.03 (95% CI: 0.90-1.19);对于隐性模型,OR为1.06 (95% CI: 0.90-1.25);优势模型OR为1.08 (95% CI: 0.85-1.38);对于过优势模型,OR为0.98 (95% CI: 0.91-1.05)。亚组分析显示,无论是亚洲人还是高加索人,风险都没有增加。敏感性分析证实了结果的稳定性,未发现明显的发表偏倚。结论本荟萃分析结果提示,DVWA (rs7639618)多态性与KOA易感性在总体人群或特定族群中均无显著相关性。尽管有严格的方法和全面的分析,但在一些遗传模型中存在实质性的异质性,这强调了进一步在不同人群中进行精心设计的大规模研究的必要性。
{"title":"Association of DVWA (rs7639618) gene polymorphisms with knee osteoarthritis susceptibility: An updated systematic review and meta-analysis","authors":"Annamalai R ,&nbsp;Venkatramanaiah C ,&nbsp;Marimuthu Raja ,&nbsp;Santhosh Kumar Yasam ,&nbsp;Sujhithra A ,&nbsp;Catherine Rexy ,&nbsp;Vignesh Narasimman ,&nbsp;D. Danis Vijay","doi":"10.1016/j.humgen.2025.201519","DOIUrl":"10.1016/j.humgen.2025.201519","url":null,"abstract":"<div><h3>Background &amp; aim</h3><div>Knee osteoarthritis (KOA)<span><span><sup>1</sup></span></span> is a common degenerative joint disease characterized by progressive cartilage breakdown that leads to pain and reduced mobility. Although genetic predisposition including the double von Willebrand factor A (DVWA; rs7639618) gene polymorphism has been implicated in KOA, previous case–control studies have reported inconsistent findings. This updated meta-analysis aims to clarify the association between the DVWA (rs7639618) gene polymorphism and KOA susceptibility.</div></div><div><h3>Materials &amp; methods</h3><div>A systematic search was performed in Pub Med, Web of Science, Science Direct, and Google Scholar for case–control studies published up to June 2025. Eligible studies reported genotype and allele distributions for rs7639618 in KOA cases and controls. Study quality was assessed using the Newcastle–Ottawa Scale (NOS).<span><span><sup>2</sup></span></span> Odds ratios (ORs)<span><span><sup>3</sup></span></span> with 95 % confidence intervals (CIs)<span><span><sup>4</sup></span></span> were calculated under allele, recessive, dominant, and over-dominant models. Heterogeneity was evaluated using the Q test and I<sup>2</sup> statistic, and random- or fixed-effects models were applied accordingly. Subgroup analyses were conducted by ethnicity, and publication bias was assessed with funnel plots and Egger's test. Sensitivity analysis was carried out by excluding each study.</div></div><div><h3>Results</h3><div>Thirteen studies comprising 7110 KOA cases and 6931 controls were included. Pooled analyses across all genetic models showed no statistically significant association between rs7639618 and KOA susceptibility. For the allele contrast model, the overall OR was 1.03 (95 % CI: 0.90–1.19); for the recessive model, OR was 1.06 (95 % CI: 0.90–1.25); for the dominant model, OR was 1.08 (95 % CI: 0.85–1.38); and for the over-dominant model, OR was 0.98 (95 % CI: 0.91–1.05). Subgroup analyses revealed no increased risk in either Asian or Caucasian populations. Sensitivity analysis confirmed the stability of the results, and no significant publication bias was detected.</div></div><div><h3>Conclusion</h3><div>The findings of this meta-analysis suggest that the DVWA (rs7639618) polymorphism is not significantly associated with KOA susceptibility in the overall population or within specific ethnic groups. Despite the rigorous methodology and comprehensive analysis, the presence of substantial heterogeneity in some genetic models underscores the need for further well-designed, large-scale studies across diverse populations.</div></div>","PeriodicalId":29686,"journal":{"name":"Human Gene","volume":"47 ","pages":"Article 201519"},"PeriodicalIF":0.7,"publicationDate":"2025-11-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145681724","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comprehensive in silico and in vitro studies reveal the miR-30a/CALU axis as a potential therapeutic target in colorectal cancer 综合的计算机和体外研究表明,miR-30a/CALU轴是结直肠癌的潜在治疗靶点
IF 0.7 Q4 GENETICS & HEREDITY Pub Date : 2025-11-27 DOI: 10.1016/j.humgen.2025.201518
Parinaz Nasri Nasrabadi , Forouzandeh Mahjoubi , Gilles A. Robichaud , Fatemeh Masoumi , Alireza Zomorodipour
Colorectal cancer (CRC) progression involves complex molecular mechanisms that remain incompletely understood. This study investigated the expression and functional significance of calumenin (CALU) in CRC pathogenesis. Bioinformatic analyses revealed significant CALU upregulation in CRC compared to normal tissues, with expression increasing progressively from primary to metastatic tumors. Protein-protein interaction networks positioned CALU as a hub gene interacting with multiple cancer-associated proteins. Single-cell RNA sequencing revealed cell-type-specific CALU expression patterns, with the highest levels observed in tumor-derived colonic goblet cells, colonocytes, and fibroblasts. MicroRNA target prediction algorithms identified miR-30a as a potential CALU regulator, which we confirmed through luciferase reporter assays. In CRC tissues and cell lines, miR-30a expression was significantly downregulated and inversely correlated with CALU levels. Functionally, restoration of miR-30a expression in CRC cells suppressed CALU expression, inhibited proliferation, induced G0/G1 cell cycle arrest, promoted apoptosis, and reduced migration and invasion capabilities. These effects were rescued by CALU overexpression, confirming CALU as a functional target of miR-30a. Analysis of 50 paired clinical specimens supported these findings, with CALU upregulation and miR-30a downregulation correlating with poor differentiation and lymph node metastasis. Our findings introduce the miR-30a/CALU axis as a potential therapeutic target in CRC.
结直肠癌(CRC)的进展涉及复杂的分子机制仍未完全了解。本研究探讨calumenin (CALU)在结直肠癌发病中的表达及其功能意义。生物信息学分析显示,与正常组织相比,CRC中CALU显著上调,从原发性肿瘤到转移性肿瘤,CALU的表达逐渐增加。蛋白-蛋白相互作用网络将CALU定位为与多种癌症相关蛋白相互作用的枢纽基因。单细胞RNA测序揭示了细胞类型特异性的CALU表达模式,在肿瘤来源的结肠杯状细胞、结肠细胞和成纤维细胞中观察到最高水平。MicroRNA靶标预测算法确定miR-30a是潜在的CALU调节因子,我们通过荧光素酶报告基因检测证实了这一点。在结直肠癌组织和细胞系中,miR-30a的表达显著下调,并与CALU水平呈负相关。功能上,恢复CRC细胞中miR-30a表达可抑制CALU表达,抑制增殖,诱导G0/G1细胞周期阻滞,促进细胞凋亡,降低迁移和侵袭能力。这些效应被CALU过表达挽救,证实了CALU是miR-30a的功能靶点。对50个配对临床标本的分析支持了这些发现,CALU上调和miR-30a下调与分化不良和淋巴结转移相关。我们的研究结果将miR-30a/CALU轴作为CRC的潜在治疗靶点。
{"title":"Comprehensive in silico and in vitro studies reveal the miR-30a/CALU axis as a potential therapeutic target in colorectal cancer","authors":"Parinaz Nasri Nasrabadi ,&nbsp;Forouzandeh Mahjoubi ,&nbsp;Gilles A. Robichaud ,&nbsp;Fatemeh Masoumi ,&nbsp;Alireza Zomorodipour","doi":"10.1016/j.humgen.2025.201518","DOIUrl":"10.1016/j.humgen.2025.201518","url":null,"abstract":"<div><div>Colorectal cancer (CRC) progression involves complex molecular mechanisms that remain incompletely understood. This study investigated the expression and functional significance of calumenin (CALU) in CRC pathogenesis. Bioinformatic analyses revealed significant CALU upregulation in CRC compared to normal tissues, with expression increasing progressively from primary to metastatic tumors. Protein-protein interaction networks positioned CALU as a hub gene interacting with multiple cancer-associated proteins. Single-cell RNA sequencing revealed cell-type-specific CALU expression patterns, with the highest levels observed in tumor-derived colonic goblet cells, colonocytes, and fibroblasts. MicroRNA target prediction algorithms identified miR-30a as a potential CALU regulator, which we confirmed through luciferase reporter assays. In CRC tissues and cell lines, miR-30a expression was significantly downregulated and inversely correlated with CALU levels. Functionally, restoration of miR-30a expression in CRC cells suppressed CALU expression, inhibited proliferation, induced G0/G1 cell cycle arrest, promoted apoptosis, and reduced migration and invasion capabilities. These effects were rescued by CALU overexpression, confirming CALU as a functional target of miR-30a. Analysis of 50 paired clinical specimens supported these findings, with CALU upregulation and miR-30a downregulation correlating with poor differentiation and lymph node metastasis. Our findings introduce the miR-30a/CALU axis as a potential therapeutic target in CRC.</div></div>","PeriodicalId":29686,"journal":{"name":"Human Gene","volume":"47 ","pages":"Article 201518"},"PeriodicalIF":0.7,"publicationDate":"2025-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145616456","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Vitamin D receptor gene polymorphisms and the risk of autism spectrum disorder (ASD): A meta-analysis 维生素D受体基因多态性与自闭症谱系障碍(ASD)风险:一项荟萃分析
IF 0.7 Q4 GENETICS & HEREDITY Pub Date : 2025-11-26 DOI: 10.1016/j.humgen.2025.201517
Ghasem Fakourizad , Alireza Hatami , Saeed Aslani , Mohammad Masoud Eslami , Danyal Imani , Bahman Razi , Tannaz Jamialahmadi , Prashant Kesharwani , Amirhossein Sahebkar
Several investigations have noted to the potential link between Vitamin D Receptor (VDR) gene polymorphisms and autism spectrum disorder (ASD); however, the findings have been controversial. To find a convincing answer, we performed this meta-analysis to identify a reliable understanding for plausible association of VDR gene SNPs and risk of ASD susceptibility. A systematic search was performed to search for relevant studies assessing the association between the Cdx (rs11568820), TaqI (rs731236), FokI (rs2228570), ApaI (rs7975232), and BsmI (rs1544410) SNPs of the VDR gene and susceptibility to ASD released before January 2024. Odd Ratio (OR) and 95 % CI were used to show statistical relationship between the VDR gene SNPs and ASD. In the final analysis 14 studies containing 2023 ASD patients and 2008 healthy individuals were included. The comprehensive analysis revealed that the TaqI variant across all genotypes, and the FokI variant in recessive, allelic, and homozygote genetic models, were associated with an increased risk of ASD. According to the findings of this meta-analysis, TaqI and FokI SNPs play a role in predisposition to ASD; however, because of limitation in sample size and geographical distribution of included studies, findings should be interpreted cautiously.
一些研究已经注意到维生素D受体(VDR)基因多态性与自闭症谱系障碍(ASD)之间的潜在联系;然而,这些发现一直存在争议。为了找到一个令人信服的答案,我们进行了这项荟萃分析,以确定对VDR基因snp与ASD易感性风险之间的可信关联的可靠理解。系统检索2024年1月前发布的VDR基因Cdx (rs11568820)、TaqI (rs731236)、FokI (rs2228570)、ApaI (rs7975232)和BsmI (rs1544410) snp与ASD易感性相关性的相关研究。使用奇数比(OR)和95% CI显示VDR基因snp与ASD之间的统计学关系。在最后的分析中,包括2023名ASD患者和2008名健康个体的14项研究被纳入。综合分析显示,TaqI在所有基因型中的变异,以及FokI在隐性、等位基因和纯合子遗传模型中的变异与ASD风险增加有关。根据本荟萃分析的结果,TaqI和FokI snp在ASD易感性中起作用;然而,由于纳入研究的样本量和地理分布的限制,研究结果应谨慎解释。
{"title":"Vitamin D receptor gene polymorphisms and the risk of autism spectrum disorder (ASD): A meta-analysis","authors":"Ghasem Fakourizad ,&nbsp;Alireza Hatami ,&nbsp;Saeed Aslani ,&nbsp;Mohammad Masoud Eslami ,&nbsp;Danyal Imani ,&nbsp;Bahman Razi ,&nbsp;Tannaz Jamialahmadi ,&nbsp;Prashant Kesharwani ,&nbsp;Amirhossein Sahebkar","doi":"10.1016/j.humgen.2025.201517","DOIUrl":"10.1016/j.humgen.2025.201517","url":null,"abstract":"<div><div>Several investigations have noted to the potential link between <em>Vitamin D Receptor</em> (<em>VDR</em>) gene polymorphisms and autism spectrum disorder (ASD); however, the findings have been controversial. To find a convincing answer, we performed this meta-analysis to identify a reliable understanding for plausible association of <em>VDR</em> gene SNPs and risk of ASD susceptibility. A systematic search was performed to search for relevant studies assessing the association between the Cdx (rs11568820), TaqI (rs731236), <em>Fok</em>I (rs2228570), <em>Apa</em>I (rs7975232), and <em>Bsm</em>I (rs1544410) SNPs of the <em>VDR</em> gene and susceptibility to ASD released before January 2024. Odd Ratio (OR) and 95 % CI were used to show statistical relationship between the <em>VDR</em> gene SNPs and ASD. In the final analysis 14 studies containing 2023 ASD patients and 2008 healthy individuals were included. The comprehensive analysis revealed that the TaqI variant across all genotypes, and the <em>Fok</em>I variant in recessive, allelic, and homozygote genetic models, were associated with an increased risk of ASD. According to the findings of this meta-analysis, TaqI and FokI SNPs play a role in predisposition to ASD; however, because of limitation in sample size and geographical distribution of included studies, findings should be interpreted cautiously.</div></div>","PeriodicalId":29686,"journal":{"name":"Human Gene","volume":"47 ","pages":"Article 201517"},"PeriodicalIF":0.7,"publicationDate":"2025-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145616455","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Low GOPC mRNA expression is a novel candidate associated with increased risk of acute myeloid leukemia 低GOPC mRNA表达是一种与急性髓性白血病风险增加相关的新候选者
IF 0.7 Q4 GENETICS & HEREDITY Pub Date : 2025-11-24 DOI: 10.1016/j.humgen.2025.201516
Taisir A. Kadhim , Randa R. Ghamyes , Dhay A. Azeez , Mustafa A. Bashi , Ali A. Alsodani , Mohammed K. Al-Qayyim , Noor T. Kadhim , Rawan A. Nijeeb , Dhuha F.N. Bani-Wais , Ali H. Ad'hiah
Acute myeloid leukemia (AML) is a genetically heterogeneous malignant hematopoietic disorder, and research continues to update its genetic drivers. Golgi-associated PDZ and coiled-coil motif-containing (GOPC) is a signaling protein implicated in regulating cellular trafficking of transmembrane proteins. Recent research has shown that the gene encoding GOPC exhibits dysregulated expression in colorectal cancer. In AML, the significance of GOPC expression in disease risk and pathogenesis has not been explored. Therefore, a case-control study was conducted to evaluate GOPC mRNA expression in a cohort of 100 AML patients and 100 controls. GOPC expression was quantified using a reverse transcription-quantitative PCR-based fold change method (2–ΔCt). Statistical data management included receiver-operating characteristic (ROC) curve analysis, disease-risk assessment, and assessment of correlation with AML characteristics. Results revealed that GOPC expression levels (median [interquartile range: 25–75 %]) were significantly decreased in patients compared to controls (0.04 [0.02–0.14] vs. 0.73 [0.18–1.16]; probability <0.001). ROC curve analysis demonstrated the reliability of GOPC expression in distinguishing between AML patients and controls (area under the curve = 0.91; probability <0.001). Disease-risk assessment indicated that low GOPC expression was linked to a 16.15-fold increased risk of AML. GOPC expression was not affected by clinical and genetic characteristics of AML or chemotherapy and was not correlated with diagnostic laboratory criteria. In conclusion, GOPC mRNA expression was down-regulated in AML and was not affected by the patient's clinical, genetic, or laboratory characteristics. Low GOPC expression may be considered a potential risk factor for AML.
急性髓性白血病(AML)是一种遗传异质性的恶性造血疾病,其遗传驱动因素的研究不断更新。高尔基蛋白相关PDZ和含盘绕线圈基序(GOPC)是一种参与调节细胞跨膜蛋白运输的信号蛋白。最近的研究表明,编码GOPC的基因在结直肠癌中表达失调。在AML中,GOPC表达在疾病风险和发病机制中的意义尚未探讨。因此,我们进行了一项病例对照研究,以评估100名AML患者和100名对照者的GOPC mRNA表达。使用基于逆转录-定量pcr的折叠变化方法定量GOPC表达(2 -ΔCt)。统计资料管理包括受试者工作特征(ROC)曲线分析、疾病风险评估以及与AML特征的相关性评估。结果显示,与对照组相比,患者的GOPC表达水平(中位数[四分位数范围:25 - 75%])显著降低(0.04 [0.02-0.14]vs. 0.73[0.18-1.16];概率<;0.001)。ROC曲线分析证明了GOPC表达在区分AML患者和对照组中的可靠性(曲线下面积= 0.91;概率<;0.001)。疾病风险评估表明,低GOPC表达与AML风险增加16.15倍相关。GOPC的表达不受AML的临床和遗传特征或化疗的影响,也与诊断实验室标准无关。总之,AML中GOPC mRNA表达下调,不受患者临床、遗传或实验室特征的影响。低GOPC表达可能被认为是AML的潜在危险因素。
{"title":"Low GOPC mRNA expression is a novel candidate associated with increased risk of acute myeloid leukemia","authors":"Taisir A. Kadhim ,&nbsp;Randa R. Ghamyes ,&nbsp;Dhay A. Azeez ,&nbsp;Mustafa A. Bashi ,&nbsp;Ali A. Alsodani ,&nbsp;Mohammed K. Al-Qayyim ,&nbsp;Noor T. Kadhim ,&nbsp;Rawan A. Nijeeb ,&nbsp;Dhuha F.N. Bani-Wais ,&nbsp;Ali H. Ad'hiah","doi":"10.1016/j.humgen.2025.201516","DOIUrl":"10.1016/j.humgen.2025.201516","url":null,"abstract":"<div><div>Acute myeloid leukemia (AML) is a genetically heterogeneous malignant hematopoietic disorder, and research continues to update its genetic drivers. Golgi-associated PDZ and coiled-coil motif-containing (GOPC) is a signaling protein implicated in regulating cellular trafficking of transmembrane proteins. Recent research has shown that the gene encoding GOPC exhibits dysregulated expression in colorectal cancer. In AML, the significance of <em>GOPC</em> expression in disease risk and pathogenesis has not been explored. Therefore, a case-control study was conducted to evaluate <em>GOPC</em> mRNA expression in a cohort of 100 AML patients and 100 controls. <em>GOPC</em> expression was quantified using a reverse transcription-quantitative PCR-based fold change method (2<sup>–ΔCt</sup>). Statistical data management included receiver-operating characteristic (ROC) curve analysis, disease-risk assessment, and assessment of correlation with AML characteristics. Results revealed that <em>GOPC</em> expression levels (median [interquartile range: 25–75 %]) were significantly decreased in patients compared to controls (0.04 [0.02–0.14] vs. 0.73 [0.18–1.16]; probability &lt;0.001). ROC curve analysis demonstrated the reliability of <em>GOPC</em> expression in distinguishing between AML patients and controls (area under the curve = 0.91; probability &lt;0.001). Disease-risk assessment indicated that low <em>GOPC</em> expression was linked to a 16.15-fold increased risk of AML. <em>GOPC</em> expression was not affected by clinical and genetic characteristics of AML or chemotherapy and was not correlated with diagnostic laboratory criteria<em>.</em> In conclusion, <em>GOPC</em> mRNA expression was down-regulated in AML and was not affected by the patient's clinical, genetic, or laboratory characteristics. Low <em>GOPC</em> expression may be considered a potential risk factor for AML.</div></div>","PeriodicalId":29686,"journal":{"name":"Human Gene","volume":"47 ","pages":"Article 201516"},"PeriodicalIF":0.7,"publicationDate":"2025-11-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145616454","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Multi-dataset transcriptomic study reveals key regulatory pathways and drug targets in rheumatoid arthritis 多数据集转录组学研究揭示类风湿关节炎的关键调控途径和药物靶点
IF 0.7 Q4 GENETICS & HEREDITY Pub Date : 2025-11-22 DOI: 10.1016/j.humgen.2025.201515
Ali Babaei-Ghaghelestany , Somayeh Pashaei , Reza Khodarahmi , Maryam Mehrabi , Masomeh Mehrabi
Rheumatoid arthritis (RA) is a chronic autoimmune disorder characterized by persistent synovial inflammation, progressive joint destruction, and systemic complications. Despite significant advancements in RA research, the molecular mechanisms driving disease progression remain incompletely understood. This study employed an integrated bioinformatics approach to uncover differentially expressed genes (DEGs), key signaling pathways, and potential therapeutic targets in RA. Four publicly available microarray datasets (GSE56649, GSE93272, GSE110169, and GSE45291) from the NCBI Gene Expression Omnibus (GEO) were analyzed using the limma package in R with thresholds of |log2 fold change| > 0.1 and adjusted p-value <0.05. Common DEGs across datasets were identified by Venn diagram analysis and subjected to functional enrichment. Protein–protein interaction (PPI) networks were constructed using STRING and analyzed in Cytoscape with CytoHubba to extract hub genes. Clustering was performed with Gephi, and drug–gene interactions were explored using DGIdb. A total of 394 common DEGs were identified, significantly enriched in proteasome function, chromatin remodeling, oxidative phosphorylation, JAK-STAT signaling, and Th17 cell differentiation—pathways central to RA pathogenesis. Network analysis revealed ten hub genes (PSMA4, HSP90AA1, PSMD2, TRIM28, RBBP4, SIRT1, RPL35, HNRNPK, MAPK8, and PSMD10) as potential regulators in RA, implicated in inflammation, immune signaling, oxidative stress, and cartilage degradation. Among them, HSP90AA1, SIRT1, and MAPK8 showed particular relevance to RA through modulation of NF-κB, STAT3, and MAPK pathways. Drug–gene interaction analysis identified 21 small molecules targeting these hub genes, highlighting opportunities for drug repurposing. Collectively, these findings provide new insights into RA pathogenesis and highlight candidate biomarkers and therapeutic targets that may support earlier diagnosis and the development of novel targeted therapies.
类风湿性关节炎(RA)是一种慢性自身免疫性疾病,以持续滑膜炎症、进行性关节破坏和全身并发症为特征。尽管类风湿性关节炎的研究取得了重大进展,但驱动疾病进展的分子机制仍然不完全清楚。本研究采用综合生物信息学方法揭示RA的差异表达基因(DEGs)、关键信号通路和潜在治疗靶点。使用R中的limma软件包分析来自NCBI基因表达Omnibus (GEO)的四个公开的微阵列数据集(GSE56649, GSE93272, GSE110169和GSE45291),阈值为|log2 fold change| >; 0.1,调整p值<;0.05。通过维恩图分析确定了数据集之间的共同deg,并进行了功能富集。利用STRING构建蛋白-蛋白相互作用(PPI)网络,并在Cytoscape中使用CytoHubba进行分析,提取枢纽基因。使用Gephi进行聚类,使用DGIdb探索药物-基因相互作用。共鉴定出394个共同的DEGs,显著富集于蛋白酶体功能、染色质重塑、氧化磷酸化、JAK-STAT信号传导和Th17细胞分化途径,这些途径是RA发病的核心途径。网络分析显示,10个枢纽基因(PSMA4、HSP90AA1、PSMD2、TRIM28、RBBP4、SIRT1、RPL35、HNRNPK、MAPK8和PSMD10)是RA的潜在调节因子,涉及炎症、免疫信号、氧化应激和软骨降解。其中,HSP90AA1、SIRT1和MAPK8通过调节NF-κB、STAT3和MAPK通路与RA表现出特别的相关性。药物-基因相互作用分析确定了21个靶向这些中心基因的小分子,突出了药物再利用的机会。总的来说,这些发现为RA的发病机制提供了新的见解,并突出了候选生物标志物和治疗靶点,可能支持早期诊断和新型靶向治疗的开发。
{"title":"Multi-dataset transcriptomic study reveals key regulatory pathways and drug targets in rheumatoid arthritis","authors":"Ali Babaei-Ghaghelestany ,&nbsp;Somayeh Pashaei ,&nbsp;Reza Khodarahmi ,&nbsp;Maryam Mehrabi ,&nbsp;Masomeh Mehrabi","doi":"10.1016/j.humgen.2025.201515","DOIUrl":"10.1016/j.humgen.2025.201515","url":null,"abstract":"<div><div>Rheumatoid arthritis (RA) is a chronic autoimmune disorder characterized by persistent synovial inflammation, progressive joint destruction, and systemic complications. Despite significant advancements in RA research, the molecular mechanisms driving disease progression remain incompletely understood. This study employed an integrated bioinformatics approach to uncover differentially expressed genes (DEGs), key signaling pathways, and potential therapeutic targets in RA. Four publicly available microarray datasets (GSE56649, GSE93272, GSE110169, and GSE45291) from the NCBI Gene Expression Omnibus (GEO) were analyzed using the <em>limma</em> package in R with thresholds of |log2 fold change| &gt; 0.1 and adjusted <em>p</em>-value &lt;0.05. Common DEGs across datasets were identified by Venn diagram analysis and subjected to functional enrichment. Protein–protein interaction (PPI) networks were constructed using STRING and analyzed in Cytoscape with CytoHubba to extract hub genes. Clustering was performed with Gephi, and drug–gene interactions were explored using DGIdb. A total of 394 common DEGs were identified, significantly enriched in proteasome function, chromatin remodeling, oxidative phosphorylation, JAK-STAT signaling, and Th17 cell differentiation—pathways central to RA pathogenesis. Network analysis revealed ten hub genes (<em>PSMA4</em>, <em>HSP90AA1</em>, <em>PSMD2</em>, <em>TRIM28</em>, <em>RBBP4</em>, <em>SIRT1</em>, <em>RPL35</em>, <em>HNRNPK</em>, <em>MAPK8</em>, and <em>PSMD10</em>) as potential regulators in RA, implicated in inflammation, immune signaling, oxidative stress, and cartilage degradation. Among them, <em>HSP90AA1</em>, <em>SIRT1</em>, and <em>MAPK8</em> showed particular relevance to RA through modulation of NF-κB, STAT3, and MAPK pathways. Drug–gene interaction analysis identified 21 small molecules targeting these hub genes, highlighting opportunities for drug repurposing. Collectively, these findings provide new insights into RA pathogenesis and highlight candidate biomarkers and therapeutic targets that may support earlier diagnosis and the development of novel targeted therapies.</div></div>","PeriodicalId":29686,"journal":{"name":"Human Gene","volume":"47 ","pages":"Article 201515"},"PeriodicalIF":0.7,"publicationDate":"2025-11-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145616458","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Response to commentary on Livni & Skorecki, “Distinguishing between founder and host population mtDNA lineages in the Ashkenazi population” 对Livni & Skorecki的评论的回应,“区分德系犹太人的创始人群和宿主人群的mtDNA谱系”
IF 0.7 Q4 GENETICS & HEREDITY Pub Date : 2025-11-22 DOI: 10.1016/j.humgen.2025.201514
Joseph Livni , Karl Skorecki
This document is a response to Joseph Fiaith, Commentary on Livni & Skorecki, “Distinguishing between Founder and Host Population mtDNA Lineages in the Ashkenazi Population”. Human Gene 46. doi: 10.1016.
本文件是对Joseph Fiaith评论Livni & Skorecki,“区分德系犹太人的始祖族群和接纳族群mtDNA谱系”的回应。人类基因46。doi: 10.1016。
{"title":"Response to commentary on Livni & Skorecki, “Distinguishing between founder and host population mtDNA lineages in the Ashkenazi population”","authors":"Joseph Livni ,&nbsp;Karl Skorecki","doi":"10.1016/j.humgen.2025.201514","DOIUrl":"10.1016/j.humgen.2025.201514","url":null,"abstract":"<div><div>This document is a response to Joseph Fiaith, Commentary on Livni &amp; Skorecki, “Distinguishing between Founder and Host Population mtDNA Lineages in the Ashkenazi Population”. Human Gene 46. doi: 10.1016.</div></div>","PeriodicalId":29686,"journal":{"name":"Human Gene","volume":"47 ","pages":"Article 201514"},"PeriodicalIF":0.7,"publicationDate":"2025-11-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145681725","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Upregulation of long non-coding RNA LINC01614 in breast cancer and its association with clinicopathological features 长链非编码RNA LINC01614在乳腺癌中的表达上调及其与临床病理特征的关系
IF 0.7 Q4 GENETICS & HEREDITY Pub Date : 2025-11-19 DOI: 10.1016/j.humgen.2025.201501
Mohammad Reza Forouzesh Kia , Hajar Yaghoobi , Nooshafarin Shirani , Reza Eshraghi Samani
Epigenetic factors, such as regulatory RNAs, are among the most important drivers of breast cancer. Many of these non-coding RNAs are long non-coding RNAs (lncRNAs). Research has shown that numerous lncRNAs play a significant role in the development of breast cancer and can be categorized as either oncogenic or tumor suppressor. This study aims to identify the candidate lncRNAs relevant to breast cancer through bioinformatics studies and then investigate changes in their expression levels, specifically focusing on LINC01614 lncRNAs, in cancerous tissues in comparison to adjacent noncancerous tissues.

Method

In this study, gene expression data for 12,727 long non-coding RNAs (lncRNAs) were analyzed, consisting of 837 breast cancer samples and 105 normal samples, using the TANRIC database. To explore the potential biological functions of selective lncRNA, we identified its top 50 co-expressed genes using the lncHUB platform. This list of genes was subsequently subjected to comprehensive enrichment analysis, using the Enrichment Analysis Visualizer Appyter. Post-surgery patient samples were collected, and RNA was isolated and converted to cDNA for real-time quantitative PCR (RT-qPCR) to evaluate gene expression levels. Graph Pad Prism was employed for statistical evaluation of the data.

Result and discussion

Differential expression analysis revealed 64 lncRNAs, with LINC01614 showing the highest up-regulation (logFC of 2.34). Functional enrichment analysis of co-expressed genes revealed strong associations with key oncogenic pathways, including extracellular matrix organization, PI3K-AKT-mTOR signaling, and immune response processes. The analysis of long non-coding RNA LINC01614 indicated a significant 6.5-fold increase in cancer samples compared to normal tissues, suggesting its role in breast cancer development. Expression levels varied by tumor grade, with higher levels observed in grades 1 and 2 compared to grade 3, indicating its potential significance in tumor development. The study also explored the relationship between LINC01614 expression and PR-receptor status.

Conclusion

This study reveals the multifunctional role of LINC01614 in breast cancer pathogenesis. Its significant overexpression and involvement in diverse oncogenic processes highlight its potential as both a novel diagnostic biomarker and a promising therapeutic target. Further investigations are warranted to elucidate its precise mechanisms and clinical applicability.
表观遗传因素,如调控rna,是乳腺癌最重要的驱动因素之一。这些非编码rna中有许多是长链非编码rna (lncrna)。研究表明,许多lncrna在乳腺癌的发展中起着重要作用,可分为致癌和抑癌两类。本研究旨在通过生物信息学研究,确定与乳腺癌相关的候选lncrna,并研究其在癌组织中与邻近非癌组织相比表达水平的变化,重点关注LINC01614 lncrna。方法利用TANRIC数据库,分析837例乳腺癌样本和105例正常样本中12727种长链非编码rna (lncRNAs)的基因表达数据。为了探索选择性lncRNA的潜在生物学功能,我们使用lncHUB平台鉴定了其前50个共表达基因。随后使用富集分析可视化工具对该基因列表进行全面富集分析。收集术后患者标本,分离RNA转化为cDNA,进行实时定量PCR (RT-qPCR)检测基因表达水平。采用Graph Pad Prism对数据进行统计评价。差异表达分析共发现64个lncrna,其中LINC01614上调幅度最大(logFC为2.34)。共表达基因的功能富集分析显示,它们与细胞外基质组织、PI3K-AKT-mTOR信号传导和免疫反应过程等关键致癌途径密切相关。长链非编码RNA LINC01614的分析表明,与正常组织相比,癌症样本中的长链非编码RNA增加了6.5倍,表明其在乳腺癌发展中的作用。表达水平因肿瘤分级而异,1级和2级的表达水平高于3级,表明其在肿瘤发展中的潜在意义。本研究还探讨了LINC01614表达与pr受体状态的关系。结论揭示了LINC01614在乳腺癌发病中的多功能作用。其显著的过表达和参与多种致癌过程,突出了其作为一种新的诊断生物标志物和有希望的治疗靶点的潜力。需要进一步的研究来阐明其确切的机制和临床适用性。
{"title":"Upregulation of long non-coding RNA LINC01614 in breast cancer and its association with clinicopathological features","authors":"Mohammad Reza Forouzesh Kia ,&nbsp;Hajar Yaghoobi ,&nbsp;Nooshafarin Shirani ,&nbsp;Reza Eshraghi Samani","doi":"10.1016/j.humgen.2025.201501","DOIUrl":"10.1016/j.humgen.2025.201501","url":null,"abstract":"<div><div>Epigenetic factors, such as regulatory RNAs, are among the most important drivers of breast cancer. Many of these non-coding RNAs are long non-coding RNAs (lncRNAs). Research has shown that numerous lncRNAs play a significant role in the development of breast cancer and can be categorized as either oncogenic or tumor suppressor. This study aims to identify the candidate lncRNAs relevant to breast cancer through bioinformatics studies and then investigate changes in their expression levels, specifically focusing on LINC01614 lncRNAs, in cancerous tissues in comparison to adjacent noncancerous tissues.</div></div><div><h3>Method</h3><div>In this study, gene expression data for 12,727 long non-coding RNAs (lncRNAs) were analyzed, consisting of 837 breast cancer samples and 105 normal samples, using the TANRIC database. To explore the potential biological functions of selective lncRNA, we identified its top 50 co-expressed genes using the lncHUB platform. This list of genes was subsequently subjected to comprehensive enrichment analysis, using the Enrichment Analysis Visualizer Appyter. Post-surgery patient samples were collected, and RNA was isolated and converted to cDNA for real-time quantitative PCR (RT-qPCR) to evaluate gene expression levels. Graph Pad Prism was employed for statistical evaluation of the data.</div></div><div><h3>Result and discussion</h3><div>Differential expression analysis revealed 64 lncRNAs, with LINC01614 showing the highest up-regulation (logFC of 2.34). Functional enrichment analysis of co-expressed genes revealed strong associations with key oncogenic pathways, including extracellular matrix organization, PI3K-AKT-mTOR signaling, and immune response processes. The analysis of long non-coding RNA LINC01614 indicated a significant 6.5-fold increase in cancer samples compared to normal tissues, suggesting its role in breast cancer development. Expression levels varied by tumor grade, with higher levels observed in grades 1 and 2 compared to grade 3, indicating its potential significance in tumor development. The study also explored the relationship between LINC01614 expression and PR-receptor status.</div></div><div><h3>Conclusion</h3><div>This study reveals the multifunctional role of LINC01614 in breast cancer pathogenesis. Its significant overexpression and involvement in diverse oncogenic processes highlight its potential as both a novel diagnostic biomarker and a promising therapeutic target. Further investigations are warranted to elucidate its precise mechanisms and clinical applicability.</div></div>","PeriodicalId":29686,"journal":{"name":"Human Gene","volume":"47 ","pages":"Article 201501"},"PeriodicalIF":0.7,"publicationDate":"2025-11-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145681726","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Computational analysis of missense variants in MT-ND1 and MT-CO2 associated with breast cancer: A functional and structural impact 与乳腺癌相关的MT-ND1和MT-CO2错义变异的计算分析:功能和结构影响
IF 0.7 Q4 GENETICS & HEREDITY Pub Date : 2025-11-15 DOI: 10.1016/j.humgen.2025.201513
Rhuthuparna Malayil , Anjana Munshi , Sandeep Singh
This study explores the impact of genetic variations in two mitochondrial genes, MT-ND1 and MT-CO2 on breast cancer development. Through sequence- and structure-based bioinformatics analysis, an mt.7830 G > A (CGC > CAC) mutation in the MT-CO2 gene was identified in a 60-year-old woman as the most deleterious. This mutation leads to the substitution of a conserved arginine (R82) with histidine, potentially disrupting COX2 function. Publicly available databases highlight that arginine is the most frequently mutated amino acid in human cancers, with codons CGC, CGG, and CGT being the primary sites of substitution. The mt.7830 G > A mutation impairs oxidative phosphorylation (OXPHOS), potentially increasing reactive oxygen species (ROS) production and contributing to disease progression. Additionally, a potential genotoxic influence of arsenic on mitochondrial function cannot be excluded. The variant rs878897170 was identified in a single case. The results are best viewed as preliminary observations and confirmation in larger cohorts and experimental validation are essential to authenticate the findings of the current study.
本研究探讨了MT-ND1和MT-CO2两个线粒体基因的遗传变异对乳腺癌发展的影响。通过基于序列和结构的生物信息学分析,在一名60岁女性中鉴定出MT-CO2基因中的mt.7830 G > A (CGC >; CAC)突变是最有害的。这种突变导致保守的精氨酸(R82)被组氨酸取代,潜在地破坏了COX2的功能。公开的数据库强调精氨酸是人类癌症中最常见的突变氨基酸,密码子CGC、CGG和CGT是主要的替代位点。mt. 7830g >; A突变损害氧化磷酸化(OXPHOS),潜在地增加活性氧(ROS)的产生并促进疾病进展。此外,砷对线粒体功能的潜在遗传毒性影响也不能排除。变体rs878897170在一个案例中被识别出来。结果最好被视为初步观察结果,并在更大的队列中进行确认,实验验证对于验证当前研究的结果至关重要。
{"title":"Computational analysis of missense variants in MT-ND1 and MT-CO2 associated with breast cancer: A functional and structural impact","authors":"Rhuthuparna Malayil ,&nbsp;Anjana Munshi ,&nbsp;Sandeep Singh","doi":"10.1016/j.humgen.2025.201513","DOIUrl":"10.1016/j.humgen.2025.201513","url":null,"abstract":"<div><div>This study explores the impact of genetic variations in two mitochondrial genes, MT-ND1 and MT-CO2 on breast cancer development. Through sequence- and structure-based bioinformatics analysis, an mt.7830 G &gt; A (CGC &gt; CAC) mutation in the MT-CO2 gene was identified in a 60-year-old woman as the most deleterious. This mutation leads to the substitution of a conserved arginine (R82) with histidine, potentially disrupting COX2 function. Publicly available databases highlight that arginine is the most frequently mutated amino acid in human cancers, with codons CGC, CGG, and CGT being the primary sites of substitution. The mt.7830 G &gt; A mutation impairs oxidative phosphorylation (OXPHOS), potentially increasing reactive oxygen species (ROS) production and contributing to disease progression. Additionally, a potential genotoxic influence of arsenic on mitochondrial function cannot be excluded. The variant rs878897170 was identified in a single case. The results are best viewed as preliminary observations and confirmation in larger cohorts and experimental validation are essential to authenticate the findings of the current study.</div></div>","PeriodicalId":29686,"journal":{"name":"Human Gene","volume":"47 ","pages":"Article 201513"},"PeriodicalIF":0.7,"publicationDate":"2025-11-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145571143","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Study of the association between MAO-B and 5-HTTLPR polymorphism involved in serotonergic system with unsafe behaviors and personality traits MAO-B与5-羟色胺能系统5-HTTLPR多态性与不安全行为和人格特质的关系研究
IF 0.7 Q4 GENETICS & HEREDITY Pub Date : 2025-11-11 DOI: 10.1016/j.humgen.2025.201511
Zahra Alizadeh , Forough Shams , Vafa Feyzi , Ali Alboghobeish , Mostafa Pouyakian

Background

Unsafe behaviors are believed to be related to genetic differences of people. The present study aimed to the relationship between unsafe behaviors and personality traits with the polymorphism of the genes involved in serotonergic system.

Methods

Safety behavior sampling technique, the short form of NEO-five factor inventory (NEO-FFI) and demographic information questionnaire were respectively used. Blood samples were collected for genotyping of the serotonin transporter gene 5-HTTLPR and MAO-B polymorphisms.

Result

Participants getting high scores in neuroticism and low scores in agreeableness and those possessing 5-HTTLPR SS and LL genotypes, as well as the XAY genotype of MAO-B A644G polymorphism, were more involved in unsafe behaviors. There was a significant association between 5-HTTLPR polymorphism in serotonin transporter of LS and SS genotype and MAO-B polymorphism in MAO-B A644G gene of XGY genotype is higher compared to the other unsafe behaviors. However, those with 5-HTTLPR LS genotype, as well as the XGY genotype of MAO-B A644G polymorphism, achieved a great score regarding agreeableness.

Conclusion

Due to the role of hereditary differences in individuals' tendency to unsafe behaviors, the results of the present study can be considered in job design wherever the ethics code allows.
不安全行为被认为与人们的基因差异有关。本研究旨在从血清素能系统相关基因多态性的角度探讨不安全行为与人格特质的关系。方法分别采用安全行为抽样法、NEO-FFI简易量表和人口统计信息问卷。采集血样进行5-羟色胺转运体基因5-HTTLPR和MAO-B多态性的基因分型。结果神经质分高、亲和性分低、5-HTTLPR SS、LL基因型以及MAO-B A644G多态性的XAY基因型的被试参与不安全行为较多。LS和SS基因型血清素转运体5-HTTLPR多态性与XGY基因型MAO-B A644G基因MAO-B多态性之间存在显著相关性。而5-HTTLPR LS基因型和MAO-B A644G多态性的XGY基因型在亲和性方面得分较高。结论由于遗传差异对个体不安全行为倾向的影响,本研究的结果可以在任何道德规范允许的情况下用于职位设计。
{"title":"Study of the association between MAO-B and 5-HTTLPR polymorphism involved in serotonergic system with unsafe behaviors and personality traits","authors":"Zahra Alizadeh ,&nbsp;Forough Shams ,&nbsp;Vafa Feyzi ,&nbsp;Ali Alboghobeish ,&nbsp;Mostafa Pouyakian","doi":"10.1016/j.humgen.2025.201511","DOIUrl":"10.1016/j.humgen.2025.201511","url":null,"abstract":"<div><h3>Background</h3><div>Unsafe behaviors are believed to be related to genetic differences of people. The present study aimed to the relationship between unsafe behaviors and personality traits with the polymorphism of the genes involved in serotonergic system.</div></div><div><h3>Methods</h3><div>Safety behavior sampling technique, the short form of NEO-five factor inventory (NEO-FFI) and demographic information questionnaire were respectively used. Blood samples were collected for genotyping of the serotonin transporter gene <em>5-HTTLPR</em> and <em>MAO-B</em> polymorphisms.</div></div><div><h3>Result</h3><div>Participants getting high scores in neuroticism and low scores in agreeableness and those possessing 5-<em>HTTLPR</em> SS and LL genotypes, as well as the X<sub>A</sub>Y genotype of <em>MAO-B</em> A644G polymorphism, were more involved in unsafe behaviors. There was a significant association between <em>5-HTTLPR</em> polymorphism in serotonin transporter of LS and SS genotype and MAO-B polymorphism in <em>MAO-B</em> A644G gene of X<sub>G</sub>Y genotype is higher compared to the other unsafe behaviors. However, those with 5-<em>HTTLPR</em> LS genotype, as well as the X<sub>G</sub>Y genotype of <em>MAO-B</em> A644G polymorphism, achieved a great score regarding agreeableness.</div></div><div><h3>Conclusion</h3><div>Due to the role of hereditary differences in individuals' tendency to unsafe behaviors, the results of the present study can be considered in job design wherever the ethics code allows.</div></div>","PeriodicalId":29686,"journal":{"name":"Human Gene","volume":"47 ","pages":"Article 201511"},"PeriodicalIF":0.7,"publicationDate":"2025-11-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145532402","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Role of the translocon-associated protein (TRAP)/signal sequence receptor (SSR) complex in the pathogenesis of human diseases 转座子相关蛋白(TRAP)/信号序列受体(SSR)复合物在人类疾病发病机制中的作用
IF 0.7 Q4 GENETICS & HEREDITY Pub Date : 2025-11-07 DOI: 10.1016/j.humgen.2025.201510
Darshika Amarakoon, Seong-Ho Lee
The translocon-associated protein/signal sequence receptor (TRAP/SSR) complex, an integral membrane protein complex of the endoplasmic reticulum (ER), has emerged as a critical regulator of co-translational protein translocation, protein secretion, and cellular homeostasis. Despite its fundamental role, research on the TRAP/SSR complex in human diseases remains limited, focusing mainly on its involvement in cancer, diabetes, neurodegenerative and spinal disorders, and hepatitis B virus infection. This review summarizes recent advances in understanding TRAP/SSR function in disease pathogenesis, highlighting its pro-tumorigenic activity, regulation of insulin biosynthesis and secretion, and potential as a biomarker for early diagnosis of neurodegenerative and spine-related disorders. Furthermore, the TRAP/SSR complex facilitates the translocation and secretion of the hepatitis B e antigen, emphasizing its role in viral pathogenesis. However, substantial research gaps persist due to the novelty of this field, and the molecular mechanisms underlying TRAP/SSR-mediated disease regulation remain incompletely understood. Therefore, future investigations should aim to elucidate the mechanistic links between TRAP/SSR dysfunction and diverse pathological conditions, including metabolic, neurodegenerative, infectious, and malignant diseases. Defining disease-specific downstream effectors and interactions with ER stress pathways – particularly the unfolded protein response and ER-associated degradation – will be critical to clarifying its contribution to cellular homeostasis and disease progression. The development of targeted therapeutic strategies to modulate TRAP/SSR activity, supported by integrative multi-omics and structural biology approaches, may ultimately enable the translation of these insights into diagnostic and therapeutic applications.
经位点相关蛋白/信号序列受体(TRAP/SSR)复合物是内质网(ER)的完整膜蛋白复合物,已成为共翻译蛋白易位、蛋白分泌和细胞稳态的关键调节因子。尽管TRAP/SSR复合物具有基础作用,但对其在人类疾病中的研究仍然有限,主要集中在其与癌症、糖尿病、神经退行性疾病和脊柱疾病以及乙型肝炎病毒感染的关系上。本文综述了TRAP/SSR在疾病发病机制中的作用,重点介绍了其致瘤活性,胰岛素生物合成和分泌的调节,以及作为神经退行性疾病和脊柱相关疾病早期诊断的生物标志物的潜力。此外,TRAP/SSR复合物促进乙型肝炎e抗原的易位和分泌,强调其在病毒发病中的作用。然而,由于这一领域的新颖性,大量的研究空白仍然存在,并且TRAP/ ssr介导的疾病调节的分子机制仍然不完全清楚。因此,未来的研究应旨在阐明TRAP/SSR功能障碍与多种病理状况(包括代谢性、神经退行性、感染性和恶性疾病)之间的机制联系。明确疾病特异性下游效应物和内质网应激途径的相互作用——特别是未折叠蛋白反应和内质网相关降解——对于阐明其在细胞稳态和疾病进展中的作用至关重要。在综合多组学和结构生物学方法的支持下,开发靶向治疗策略来调节TRAP/SSR活性,最终可能使这些见解转化为诊断和治疗应用。
{"title":"Role of the translocon-associated protein (TRAP)/signal sequence receptor (SSR) complex in the pathogenesis of human diseases","authors":"Darshika Amarakoon,&nbsp;Seong-Ho Lee","doi":"10.1016/j.humgen.2025.201510","DOIUrl":"10.1016/j.humgen.2025.201510","url":null,"abstract":"<div><div>The translocon-associated protein/signal sequence receptor (TRAP/SSR) complex, an integral membrane protein complex of the endoplasmic reticulum (ER), has emerged as a critical regulator of co-translational protein translocation, protein secretion, and cellular homeostasis. Despite its fundamental role, research on the TRAP/SSR complex in human diseases remains limited, focusing mainly on its involvement in cancer, diabetes, neurodegenerative and spinal disorders, and hepatitis B virus infection. This review summarizes recent advances in understanding TRAP/SSR function in disease pathogenesis, highlighting its pro-tumorigenic activity, regulation of insulin biosynthesis and secretion, and potential as a biomarker for early diagnosis of neurodegenerative and spine-related disorders. Furthermore, the TRAP/SSR complex facilitates the translocation and secretion of the hepatitis B e antigen, emphasizing its role in viral pathogenesis. However, substantial research gaps persist due to the novelty of this field, and the molecular mechanisms underlying TRAP/SSR-mediated disease regulation remain incompletely understood. Therefore, future investigations should aim to elucidate the mechanistic links between TRAP/SSR dysfunction and diverse pathological conditions, including metabolic, neurodegenerative, infectious, and malignant diseases. Defining disease-specific downstream effectors and interactions with ER stress pathways – particularly the unfolded protein response and ER-associated degradation – will be critical to clarifying its contribution to cellular homeostasis and disease progression. The development of targeted therapeutic strategies to modulate TRAP/SSR activity, supported by integrative multi-omics and structural biology approaches, may ultimately enable the translation of these insights into diagnostic and therapeutic applications.</div></div>","PeriodicalId":29686,"journal":{"name":"Human Gene","volume":"46 ","pages":"Article 201510"},"PeriodicalIF":0.7,"publicationDate":"2025-11-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145519418","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Human Gene
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1