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A Comprehensive Analysis and Prediction of Sub-Cellular Localization of Human Nuclear Receptors 人核受体亚细胞定位的综合分析与预测
Pub Date : 2018-06-04 DOI: 10.11131/2018/101324
Samatha Mathew, Keshav Thakur, Sudhir Kumar, A. Yende, Shashi Singh, A. K. Dash, R. Tyagi
The Nuclear Receptor (NR) superfamily comprises of conserved ligand-modulated intracellular transcription factors which in the presence of their cognate ligands activate a plethora of signaling networks, thereby commencing their respective transcription functions. All NRs are nuclear when liganded or active. However, their localization may differ between nucleus and cytoplasm when unliganded or inactive. NRs control a majority of physiological processes in body ranging from metabolism to reproduction and development. Hitherto, in case of humans, 48 NRs have been identified which are localized either in cytosolic, nuclear or both compartments of the cell. Sub-cellular localization of proteins has great relevance in relation to their function. However, specific sub-cellular localization patterns of human NRs are clouded with ambiguity and are mostly ridden with controversy, with only a few of them being well-studied and established under specific physiological conditions. In the present study, we attempted to bridge the gap and attempted to draw conclusions in relation to sub-cellular localization of human NRs based on published experimental data and by in-silico prediction methods. This comprehensive analysis may not only be useful to draw conclusions on their control of physiological processes but may also open new avenues towards understanding of the molecular basis of NR-mediated diseases attributed to their mislocalization and malfunctioning.
核受体(NR)超家族由保守的配体调节的细胞内转录因子组成,这些因子在其同源配体存在的情况下激活过多的信号网络,从而开始其各自的转录功能。所有NRs在连接物或活性时都是核的。然而,当未发光或无活性时,它们在细胞核和细胞质之间的定位可能不同。NRs控制着身体从新陈代谢到繁殖和发育的大部分生理过程。到目前为止,在人类的情况下,已经鉴定出48个NRs,它们定位在细胞的胞质、细胞核或两个隔室中。蛋白质的亚细胞定位与其功能密切相关。然而,人类NRs的特定亚细胞定位模式充满了模糊性,并且大多充满了争议,只有少数NRs在特定的生理条件下得到了很好的研究和建立。在本研究中,我们试图弥合这一差距,并试图根据已发表的实验数据和计算机预测方法,得出与人类NRs亚细胞定位有关的结论。这种全面的分析不仅有助于得出关于它们对生理过程的控制的结论,而且可能为理解NR介导的疾病的分子基础开辟新的途径,这些疾病归因于它们的定位错误和功能失调。
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引用次数: 4
Biphasic hCAR Inhibition-Activation by Two Aminoazo Liver Carcinogens 双相hCAR抑制-两种氨基偶氮肝癌物质的激活
Pub Date : 2018-02-28 DOI: 10.11131/2018/101321
K. Bogen
Detailed dose-response data recently archived by the National Center for Biotechnology Information (NCBI) identified 853 human CAR (hCAR) agonists by quantitative high-throughput screening (qHTS) assays applied to >9,000 chemicals tested at ≥14 concentrations using n = 3–48 replicates. By re-examining NCBI data on 746 agonists with replicate data sets each satisfying additional quality criteria, ∼95% had average values of agonist-specific Hill-model slopes estimated by NCBI that exceed 1 (i.e., exhibited an overall sublinear low-dose dose-response), and two unambiguously biphasic hCAR inhibitor-agonists were identified, 4-aminoazobenzene (n = 37) and ortho-aminoazotoluene (n = 3), both of which also cause rodent liver tumors. Although evidently rare among hCAR agonists, such biphasic responses add to evidence that nuclear receptors can exhibit complex patterns of low-dose response, consistent with previous observations and theoretical predictions for endpoints governed by ultrasensitive molecular switches. The pronounced biphasic hCAR response pattern observed for 4-aminoazobenzene is particularly noteworthy insofar as it was identified with statistical power that exceeds that of most if not all other receptor-mediated biphasic cellular responses to any single-chemical exposure reported to date.
美国国家生物技术信息中心(NCBI)最近存档的详细剂量反应数据通过定量高通量筛选(qHTS)分析确定了853种人类CAR(hCAR)激动剂,该分析应用于9000多种化学物质,在≥14个浓度下进行测试,使用n=3-48个重复。通过重新检查746种激动剂的NCBI数据,每个数据集都满足额外的质量标准,~95%的激动剂特异性Hill模型斜率的平均值超过1(即,表现出总体亚线性低剂量剂量反应),并确定了两种明确的双相hCAR抑制剂激动剂,4-氨基偶氮苯(n=37)和邻氨基偶氮甲苯(n=3),这两种物质也会引起啮齿动物的肝肿瘤。尽管在hCAR激动剂中明显罕见,但这种双相反应增加了核受体可以表现出复杂的低剂量反应模式的证据,这与之前对超灵敏分子开关控制的终点的观察和理论预测一致。对4-氨基偶氮苯观察到的明显的双相hCAR反应模式特别值得注意,因为它的统计能力超过了迄今为止报道的任何单一化学暴露的大多数(如果不是所有的话)其他受体介导的双相细胞反应。
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引用次数: 2
The Role of Glucocorticoid Receptors in Podocytes and Nephrotic Syndrome. 糖皮质激素受体在足细胞和肾病综合征中的作用。
Pub Date : 2018-01-01 Epub Date: 2018-04-24 DOI: 10.11131/2018/101323
Xuan Zhao, Daw-Yang Hwang, Hung-Ying Kao

Glucocorticoid receptor (GC), a founding member of the nuclear hormone receptor superfamily, is a glucocorticoid-activated transcription factor that regulates gene expression and controls the development and homeostasis of human podocytes. Synthetic glucocorticoids are the standard treatment regimens for proteinuria (protein in the urine) and nephrotic syndrome (NS) caused by kidney diseases. These include minimal change disease (MCD), focal segmental glomerulosclerosis (FSGS), membranous nephropathy (MN) and immunoglobulin A nephropathy (IgAN) or subsequent complications due to diabetes mellitus or HIV infection. However, unwanted side effects and steroid-resistance remain major issues for their long-term use. Furthermore, the mechanism by which glucocorticoids elicit their renoprotective activity in podocyte and glomeruli is poorly understood. Podocytes are highly differentiated epithelial cells that contribute to the integrity of kidney glomerular filtration barrier. Injury or loss of podocytes leads to proteinuria and nephrotic syndrome. Recent studies in multiple experimental models have begun to explore the mechanism of GC action in podocytes. This review will discuss progress in our understanding of the role of glucocorticoid receptor and glucocorticoids in podocyte physiology and their renoprotective activity in nephrotic syndrome.

糖皮质激素受体(Glucocorticoid receptor, GC)是核激素受体超家族的创始成员,是一种糖皮质激素激活的转录因子,调节基因表达,控制人足细胞的发育和稳态。合成糖皮质激素是由肾脏疾病引起的蛋白尿(尿中的蛋白质)和肾病综合征(NS)的标准治疗方案。这些疾病包括微小改变病(MCD)、局灶节段性肾小球硬化(FSGS)、膜性肾病(MN)和免疫球蛋白A肾病(IgAN)或糖尿病或HIV感染引起的后续并发症。然而,副作用和类固醇耐药性仍然是长期使用的主要问题。此外,糖皮质激素在足细胞和肾小球中引发其肾保护活性的机制尚不清楚。足细胞是高度分化的上皮细胞,有助于肾小球滤过屏障的完整性。足细胞损伤或丢失可导致蛋白尿和肾病综合征。近年来,多种实验模型的研究开始探讨GC在足细胞中的作用机制。本文就糖皮质激素受体和糖皮质激素在肾病综合征足细胞生理学中的作用及其肾保护作用的研究进展进行综述。
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引用次数: 9
Glucocorticoid Receptor and Adipocyte Biology. 糖皮质激素受体与脂肪细胞生物学。
Pub Date : 2018-01-01 DOI: 10.32527/2018/101373
Rebecca A Lee, Charles A Harris, Jen-Chywan Wang

Glucocorticoids are steroid hormones that play a key role in metabolic adaptations during stress, such as fasting and starvation, in order to maintain plasma glucose levels. Excess and chronic glucocorticoid exposure, however, causes metabolic syndrome including insulin resistance, dyslipidemia, and hyperglycemia. Studies in animal models of metabolic disorders frequently demonstrate that suppressing glucocorticoid signaling improves insulin sensitivity and metabolic profiles. Glucocorticoids convey their signals through an intracellular glucocorticoid receptor (GR), which is a transcriptional regulator. The adipocyte is one cell type that contributes to whole body metabolic homeostasis under the influence of GR. Glucocorticoids' functions on adipose tissues are complex. Depending on various physiological or pathophysiological states as well as distinct fat depots, glucocorticoids can either increase or decrease lipid storage in adipose tissues. In rodents, glucocorticoids have been shown to reduce the thermogenic activity of brown adipocytes. However, in human acute glucocorticoid exposure, glucocorticoids act to promote thermogenesis. In this article, we will review the recent studies on the mechanisms underlying the complex metabolic functions of GR in adipocytes. These include studies of the metabolic outcomes of adipocyte specific GR knockout mice and identification of novel GR primary target genes that mediate glucocorticoid action in adipocytes.

糖皮质激素是一种类固醇激素,在压力下(如禁食和饥饿)的代谢适应中发挥关键作用,以维持血糖水平。然而,过量和慢性糖皮质激素暴露会导致代谢综合征,包括胰岛素抵抗、血脂异常和高血糖症。代谢紊乱动物模型的研究经常表明,抑制糖皮质激素信号可以改善胰岛素敏感性和代谢谱。糖皮质激素通过细胞内糖皮质激素受体(GR)传递信号,GR是一种转录调节因子。脂肪细胞是GR影响下参与全身代谢稳态的一种细胞类型,糖皮质激素对脂肪组织的作用是复杂的。根据不同的生理或病理生理状态以及不同的脂肪储存,糖皮质激素可以增加或减少脂肪组织中的脂质储存。在啮齿类动物中,糖皮质激素已被证明可以降低棕色脂肪细胞的产热活性。然而,在人类急性糖皮质激素暴露中,糖皮质激素的作用是促进产热。本文将对GR在脂肪细胞中复杂代谢功能的机制进行综述。这些研究包括对脂肪细胞特异性GR敲除小鼠的代谢结果的研究,以及在脂肪细胞中介导糖皮质激素作用的新型GR主要靶基因的鉴定。
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引用次数: 52
Structural and Dynamic Elucidation of a Non-acid PPARγ Partial Agonist: SR1988. 非酸性PPARγ部分激动剂SR1988的结构和动力学解析。
Pub Date : 2018-01-01 DOI: 10.11131/2018/101350
Rebecca L Frkic, Benjamin S Chua, Youseung Shin, Bruce D Pascal, Scott J Novick, Theodore M Kamenecka, Patrick R Griffin, John B Bruning

Targeting peroxisome proliferator-activated receptor γ (PPARγ) by synthetic compounds has been shown to elicit insulin sensitising properties in type 2 diabetics. Treatment with a class of these compounds, the thiazolidinediones (TZDs), has shown adverse side effects such as weight gain, fluid retention, and congestive heart failure. This is due to their full agonist properties on the receptor, where a number of genes are upregulated beyond normal physiological levels. Lessened transactivation of PPARγ by partial agonists has proved beneficial in terms of reducing side effects, while still maintaining insulin sensitising properties. However, some partial agonists have been associated with unfavourable pharmacokinetic profiles due to their acidic moieties, often causing partitioning to the liver. Here we present SR1988, a new partial agonist with favourable non-acid chemical properties. We used a combination of X-ray crystallography and hydrogen/deuterium exchange (HDX) to elucidate the structural basis for reduced activation of PPARγ by SR1988. This structural analysis reveals a mechanism that decreases stabilisation of the AF2 coactivator binding surface by the ligand.

合成化合物靶向过氧化物酶体增殖物激活受体γ (PPARγ)已被证明可引起2型糖尿病患者的胰岛素增敏特性。用一类这类化合物,噻唑烷二酮类(TZDs)治疗,已显示出不良副作用,如体重增加、液体潴留和充血性心力衰竭。这是由于它们在受体上的完全激动剂特性,其中许多基因被上调超过正常的生理水平。部分激动剂减少PPARγ的转激活已被证明在减少副作用方面是有益的,同时仍保持胰岛素致敏特性。然而,一些部分激动剂由于其酸性部分而与不利的药代动力学特征相关,通常导致肝脏分区。在这里,我们提出了SR1988,一种新的部分激动剂,具有良好的非酸性化学性质。我们使用x射线晶体学和氢/氘交换(HDX)的组合来阐明SR1988降低PPARγ活化的结构基础。这种结构分析揭示了一种机制,降低了配体对AF2辅激活剂结合表面的稳定性。
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引用次数: 5
Regulation of Microbiota by Vitamin D Receptor: A Nuclear Weapon in Metabolic Diseases. 维生素 D 受体对微生物群的调节:代谢性疾病中的核武器
Pub Date : 2018-01-01 Epub Date: 2018-08-09 DOI: 10.11131/2018/101377
Danika Bakke, Ishita Chatterjee, Annika Agrawal, Yang Dai, Jun Sun

Metabolic syndrome is a multi-faceted disease. The microbiota, as a newly discovered organ, contributes to the pathogenesis and progression of metabolic syndrome. Recent studies have demonstrated that nuclear receptors play critical roles in metabolic diseases. In the current review, we discuss the general role of the microbiome in health and metabolic syndrome. We summarize the functions of the nuclear receptor vitamin D receptor (VDR) in metabolism. The focus of this review is the novel roles of vitamin D/VDR signaling in regulating inflammation and the microbiome, especially in obesity. Furthermore, we extend our discussion of potential gut-liver axis mediated by VDR signaling and microbiota in obesity. Finally, we discuss the potential clinical application of probiotics and fecal microbiota transplantation in prevention and treatment of metabolic syndrome. Insights into nuclear receptors in metabolism and metabolic diseases will allow us to develop new strategies for fighting metabolic diseases.

代谢综合征是一种多方面的疾病。微生物群作为一个新发现的器官,对代谢综合征的发病和发展起着重要作用。最近的研究表明,核受体在代谢性疾病中发挥着关键作用。在本综述中,我们讨论了微生物组在健康和代谢综合征中的一般作用。我们总结了核受体维生素 D 受体(VDR)在新陈代谢中的功能。本综述的重点是维生素 D/VDR 信号在调节炎症和微生物组方面的新作用,尤其是在肥胖症中的作用。此外,我们还探讨了肥胖症中由 VDR 信号和微生物群介导的潜在肠肝轴。最后,我们讨论了益生菌和粪便微生物群移植在预防和治疗代谢综合征中的潜在临床应用。对新陈代谢和代谢性疾病中核受体的深入了解将使我们能够开发出对抗代谢性疾病的新策略。
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引用次数: 0
The Nuclear Receptor Field: A Historical Overview and Future Challenges. 核受体领域:历史回顾与未来挑战。
Pub Date : 2018-01-01 Epub Date: 2018-07-26 DOI: 10.11131/2018/101320
Gisela I Mazaira, Nadia R Zgajnar, Cecilia M Lotufo, Cristina Daneri-Becerra, Jeffrey C Sivils, Olga B Soto, Marc B Cox, Mario D Galigniana

In this article we summarize the birth of the field of nuclear receptors, the discovery of untransformed and transformed isoforms of ligand-binding macromolecules, the discovery of the three-domain structure of the receptors, and the properties of the Hsp90-based heterocomplex responsible for the overall structure of the oligomeric receptor and many aspects of the biological effects. The discovery and properties of the subfamily of receptors called orphan receptors is also outlined. Novel molecular aspects of the mechanism of action of nuclear receptors and challenges to resolve in the near future are discussed.

在这篇文章中,我们总结了核受体领域的诞生、配体结合大分子的非转化型和转化型异构体的发现、受体三域结构的发现,以及基于 Hsp90 的异质复合体的特性,该复合体负责寡聚受体的整体结构和生物效应的许多方面。此外,还概述了被称为孤儿受体的受体亚家族的发现和特性。还讨论了核受体作用机制的新分子方面以及在不久的将来要解决的挑战。
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引用次数: 0
PPARs: Key Regulators of Airway Inflammation and Potential Therapeutic Targets in Asthma. PPARs:哮喘气道炎症的关键调节因子和潜在的治疗靶点。
Pub Date : 2018-01-01 Epub Date: 2017-12-11 DOI: 10.11131/2018/101306
Asoka Banno, Aravind T Reddy, Sowmya P Lakshmi, Raju C Reddy

Asthma affects approximately 300 million people worldwide, significantly impacting quality of life and healthcare costs. While current therapies are effective in controlling many patients' symptoms, a large number continue to experience exacerbations or treatment-related adverse effects. Alternative therapies are thus urgently needed. Accumulating evidence has shown that the peroxisome proliferator-activated receptor (PPAR) family of nuclear hormone receptors, comprising PPARα, PPARβ/δ, and PPARγ, is involved in asthma pathogenesis and that ligand-induced activation of these receptors suppresses asthma pathology. PPAR agonists exert their anti-inflammatory effects primarily by suppressing pro-inflammatory mediators and antagonizing the pro-inflammatory functions of various cell types relevant to asthma pathophysiology. Experimental findings strongly support the potential clinical benefits of PPAR agonists in the treatment of asthma. We review current literature, highlighting PPARs' key role in asthma pathogenesis and their agonists' therapeutic potential. With additional research and rigorous clinical studies, PPARs may become attractive therapeutic targets in this disease.

哮喘影响全球约3亿人,严重影响生活质量和医疗保健成本。虽然目前的治疗方法在控制许多患者的症状方面是有效的,但大量患者继续经历病情恶化或与治疗相关的不良反应。因此,迫切需要替代疗法。越来越多的证据表明,核激素受体的过氧化物酶体增殖物激活受体(PPAR)家族,包括PPARα、PPARβ/δ和PPARγ,参与哮喘的发病机制,并且配体诱导这些受体的激活抑制哮喘病理。PPAR激动剂主要通过抑制促炎介质和拮抗与哮喘病理生理相关的各种细胞类型的促炎功能来发挥其抗炎作用。实验结果强烈支持PPAR激动剂治疗哮喘的潜在临床益处。我们回顾了目前的文献,强调ppar在哮喘发病机制中的关键作用及其激动剂的治疗潜力。随着进一步的研究和严格的临床研究,ppar可能成为这种疾病的有吸引力的治疗靶点。
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引用次数: 57
Non-Mammalian Nuclear Receptors: From Evolution to Human Disease. 非哺乳动物核受体:从进化到人类疾病。
Pub Date : 2018-01-01 DOI: 10.11131/2018/101366
Chris R Gissendanner, William S Baldwin, Marcel J M Schaaf
In 1964, Ulrich Clever published a landmark paper on the actions of 20-hydroxyecdysone (20E), the hormone that regulates molting and metamorphosis in insects. Based on the puffing activity of Chironomus tentans salivary gland polytene chromosomes, Clever was able to establish a pattern of gene activation in response to 20E A decade later, Michael Ashburner, utiliz-ing Drosophila melanogaster salivary gland polytene chromosomes, established a formalized model (the “Ashburner Model”) where 20E, bound to its receptor, activates a set of primary (“early”) target genes. The products of these genes, in turn, repress their own expression, and activate the transcription of secondary (“late”) target genes that control metamorphosis [2]. Subsequently, it was shown that the receptor for 20E, EcR, was an insect member of the nuclear receptor superfamily, and EcR, along with its heterodimer partner Usp (homolog of RXR), bind 20E and activate a set of early target genes at the onset of metamorphosis 4]. Additionally, many of the early gene products were also nuclear receptors that regulated the transcription of the secondary late genes Thus, the fruit fly as an invertebrate model system for studying nuclear receptor signaling was established. The regulation of metamorphosis, in association with powerful fruit fly genetics, became an important system for deciphering the mechanisms of nuclear receptor action, and subsequent studies demonstrated the utility that
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引用次数: 0
PPARδ, a Potential Therapeutic Target for Heart Disease. PPARδ,心脏病的潜在治疗靶点。
Pub Date : 2018-01-01 Epub Date: 2018-10-30 DOI: 10.32527/2018/101375
Qinglin Yang, Qinqiang Long

The nuclear receptor peroxisome proliferator-activated receptor δ (PPARδ) can transcriptionally regulate target genes. PPARδ exerts essential regulatory functions in the heart, which requires constant energy supply. PPARδ plays a key role in energy metabolism, controlling not only fatty acid (FA) and glucose oxidation, but also redox homeostasis, mitochondrial biogenesis, inflammation, and cardiomyocyte proliferation. PPARδ signaling is impaired in the heart under various pathological conditions, such as pathological cardiac hypertrophy, myocardial ischemia/reperfusion, doxorubicin cardiotoxicity and diabetic cardiomyopathy. PPARδ deficiency in the heart leads to cardiac dysfunction, myocardial lipid accumulation, cardiac hypertrophy/remodeling and heart failure. This article provides an up-today overview of this research area and discusses the role of PPARδ in the heart in light of the complex mechanisms of its transcriptional regulation and its potential as a translatable therapeutic target for the treatment of cardiac disorders.

核受体过氧化物酶体增殖激活受体δ(PPARδ)可以转录调节靶基因。PPARδ 在需要持续能量供应的心脏中发挥着重要的调节功能。PPARδ 在能量代谢中发挥关键作用,不仅控制脂肪酸(FA)和葡萄糖氧化,还控制氧化还原平衡、线粒体生物生成、炎症和心肌细胞增殖。在各种病理情况下,如病理性心肌肥厚、心肌缺血/再灌注、多柔比星心脏毒性和糖尿病心肌病等,心脏中的 PPARδ 信号都会受损。心脏中 PPARδ 的缺乏会导致心脏功能障碍、心肌脂质堆积、心脏肥大/重塑和心力衰竭。本文概述了这一研究领域的最新进展,并根据 PPARδ 转录调控的复杂机制及其作为治疗心脏疾病的可转化治疗靶点的潜力,讨论了 PPARδ 在心脏中的作用。
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引用次数: 0
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Nuclear Receptor Research
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