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2015 International Conference on Advanced Computer Science and Information Systems (ICACSIS)最新文献

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Development of travel speed detection method in welding simulator using augmented reality 基于增强现实技术的焊接模拟器行走速度检测方法的开发
A. Baskoro, Irwan Haryanto
This paper explains about travel speed detection method that can be applied as the welding simulator using augmented reality. In welding process, the travel speed is an important parameter that influences the welding quality. In the future, this simulator can be used in welder training with a relatively low cost. This method uses ARToolkit, OpenGL library, and Autodesk 3Ds Max software for building the simulator. This method is the development of welding simulator that will show the deviation and accuracy of moving marker detection. This method uses differences in distance of the coordinate per unit time algorithm, taken from the amount of frames per second (FPS) of a camera. After this method was successfully built, the measurement data is taken to analyze the accuracy and the number of error in speed detection by the simulator from the actual speed with different light intensity parameter. The result is that the error in speed detection is not too large, so this simulator was successfully built and it can be developed further to get more sophisticated features on welding process in the future.
本文介绍了一种基于增强现实技术的焊接模拟器的速度检测方法。在焊接过程中,移动速度是影响焊接质量的一个重要参数。未来,该模拟器可用于焊工培训,成本相对较低。该方法使用ARToolkit, OpenGL库和Autodesk 3Ds Max软件来构建模拟器。该方法是焊接模拟器的发展,将显示移动标记检测的偏差和准确性。该方法使用单位时间内坐标距离的差异算法,从相机的每秒帧数(FPS)中提取。该方法建立成功后,利用测量数据,从不同光强参数下的实际速度出发,分析了模拟器速度检测的精度和误差数。结果表明,该仿真器的速度检测误差不太大,为今后进一步开发该仿真器以获得更复杂的焊接工艺特征打下了基础。
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引用次数: 3
Landmark analysis of leaf shape using dynamic threshold polygonal approximation 基于动态阈值多边形逼近的叶片形状特征分析
W. W. Kalengkongan, B. P. Silalahi, Y. Herdiyeni, S. Douady
This research proposes a method to extract landmark of leaf shape using dynamic threshold polygonal approximation. Landmark-based shape analysis is the core of geometric morphometric and has been used as a quantitative tool in evolutionary and developmental biology. Also, this analysis has been used by botanist and taxonomist to discriminate species. In this research, the polygonal approximation is used to select the best points that can represent the leaf shape variability. We used a dynamic threshold as the control parameter of fitting a series of line segment over a digital curve of leaf shape. This research focuses on seven leaf shape, i.e., cordate, eliptic, lanceolate, obovate, obriculate, ovate and reniform. Experimental results show dynamic polygonal approximation shows can be used to find the important points of leaf shape. This research is promising for discriminating species of plants.
提出了一种基于动态阈值多边形逼近的叶片形状特征提取方法。基于地标的形状分析是几何形态计量学的核心,已被用作进化和发育生物学的定量工具。此外,该分析还被植物学家和分类学家用于物种鉴别。在本研究中,采用多边形近似法选择最能代表叶片形状变异的点。我们使用动态阈值作为控制参数,在叶片形状的数字曲线上拟合一系列线段。本研究以心形、椭圆形、披针形、倒卵形、倒柔形、卵形和肾形七种叶形为重点。实验结果表明,动态多边形近似法可以找到叶片形状的关键点。这项研究对植物种类的鉴别具有重要意义。
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引用次数: 2
Clustering protein-protein interaction network of TP53 tumor suppressor protein using Markov clustering algorithm 基于马尔可夫聚类算法的TP53肿瘤抑制蛋白聚类蛋白相互作用网络
Thia Sabel Permata, A. Bustamam
The formation and proliferation of tumor cells occurs if a special protein that regulates cell division experience any changing on their function, gene expression or both of them. One of the tumor suppressor proteins that plays a significant role in controlling the cell cycle is the TP53 protein. In most of the genetic changes in the tumor, it found that mutant of TP53 is a high risk factor for cancer. Therefore, it is important to conduct studies on clustering protein-protein interactions (PPI) network of TP53. PPI networks are generally presented in the graph network with proteins as vertices and interactions as edges. Markov clustering (MCL) algorithm is a graph clustering method which based on a simulation of stochastic flow on a graph. In implementation, we applied MCL process using the Python programming language. The clustering datasets are the PPI of TP53 obtained from the STRING database. MCL algorithm consists of three main operations such as expansion, inflation, and prune. We conduct the clustering simulation using different parameter of expansion, inflation and the multiplier factor of identity matrix. As the results we found the MCL algorithm is proven to produce robust cluster with TP53 protein as a centroid for each clustering results.
如果调节细胞分裂的一种特殊蛋白质的功能、基因表达或两者发生变化,就会发生肿瘤细胞的形成和增殖。在控制细胞周期中起重要作用的肿瘤抑制蛋白之一是TP53蛋白。在大多数肿瘤的遗传变化中,发现TP53突变是癌症的高危因素。因此,对TP53的聚类蛋白-蛋白相互作用(PPI)网络进行研究具有重要意义。PPI网络通常在图网络中以蛋白质为顶点,相互作用为边。马尔可夫聚类(MCL)算法是一种基于在图上模拟随机流的图聚类方法。在实现中,我们使用Python编程语言应用MCL进程。聚类数据集为从STRING数据库中获得的TP53的PPI。MCL算法主要包括展开、膨胀和剪枝三种操作。采用不同的膨胀、膨胀参数和单位矩阵乘数因子进行聚类仿真。结果发现,MCL算法被证明可以产生以TP53蛋白为中心的鲁棒聚类。
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引用次数: 15
Tandem repeats analysis in DNA sequences based on improved Burrows-Wheeler transform 基于改进Burrows-Wheeler变换的DNA序列串联重复序列分析
P. Ochieng, Taufik Djatna, W. Kusuma
The enormous amount of short reads generated by the new DNA sequencing technologies call for the development of fast and accurate read alignment programs. A first generation of hash table-based methods has been developed, including Mapping and Assembly with Quality (MAQ), which is accurate, feature rich and fast enough to align short reads from a single individual. However, MAQ does not support gapped alignment for single-end reads, which makes it unsuitable for alignment of longer reads where indels may occur frequently. The speed of MAQ is also a concern when the alignment is scaled up to the resequencing of hundreds of individuals. Therefore, we carried out an in-depth performance analysis of BWA a popular BWT-based aligner and discovered that its performance is significantly better than MAQ although, it has drawbacks regarding execution speed, time complexity and accuracy. Based on those factors we implemented an improved Burrows-Wheeler Alignment algorithm (BWA), anew read alignment package which is original BWT optimized by source code of Ziv-Lempel (LZ-77) sliding window technique and prefix trie string matching, to efficiently search for inexact and exact matches on tandem repeats against a large reference sequence genome. Our analysis show that search speed of improved BWA significantly increased by approximately 1.40 ×faster than MAQ-32 while achieving sufficiently higher accuracy with percent confidence of 96.7 % and 93.0 %. Moreover, it is more efficient to search exact and inexact matches supported by percent error of 0.05 % single ends and 0.04 % for paired end reads also more effective to search for left and right overlap tandem repeat at percent confidence of 88.9%.
新的DNA测序技术产生了大量的短读,这要求开发快速准确的读比对程序。第一代基于哈希表的方法已经被开发出来,包括Mapping and Assembly with Quality (MAQ),它准确、功能丰富、速度足够快,可以对来自单个个体的短读取进行对齐。然而,MAQ不支持单端读取的间隙对齐,这使得它不适合经常出现索引的较长读取的对齐。当校准规模扩大到数百个个体的重测序时,MAQ的速度也是一个问题。因此,我们对流行的基于bwt的对齐器BWA进行了深入的性能分析,发现它的性能明显优于MAQ,尽管它在执行速度,时间复杂度和准确性方面存在缺点。基于这些因素,我们实现了改进的Burrows-Wheeler比对算法(BWA),该算法是基于Ziv-Lempel (LZ-77)滑动窗口技术和前缀三串匹配的原始BWT优化的新的读取比对包,用于在大参考序列基因组上高效地搜索串联重复序列的不精确和精确匹配。我们的分析表明,改进的BWA的搜索速度比MAQ-32显著提高了约1.40 ×faster,同时获得了足够高的准确率,百分比置信度分别为96.7%和93.0%。此外,精确匹配和不精确匹配的搜索效率更高,单端误差为0.05%,成对端读长为0.04%,左右重叠串联重复的搜索效率更高,置信度为88.9%。
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引用次数: 1
Advanced targets association based on GPU computation of PHD function 基于GPU计算的PHD函数高级目标关联
J. Pidanic, T. Shejbal, Z. Nemec, H. Suhartanto
The precise and quick association of targets is one of the main challenging tasks in the signal processing field of the Multistatic Radar System (MRS). The paper deals with target association techniques based on the computation of the Probability Hypothetic Density (PHD) Function. The Computation time makes solving the PHD a very demanding task. The speedup of a newly developed algorithm depends on vectorization and parallel processing techniques. This paper describes the comparison between the original and parallel version of the target association algorithm with the full set of input data (without any knowledge about the approximation of targets direction) and the comparison with the advanced target association algorithm using additional input information about the direction of the target. All algorithms are processed in the MATLAB environment and Microsoft Visual Studio - C. The comparison also includes Central Processor Unit (CPU) and Graphics Processor Unit (GPU) version of all algorithms.
精确、快速的目标关联是多基地雷达信号处理领域的主要挑战之一。本文研究了基于概率假设密度函数计算的目标关联技术。由于计算时间的限制,求解PHD是一项非常艰巨的任务。一种新开发的算法的加速依赖于向量化和并行处理技术。本文描述了原始版本的目标关联算法与并行版本的目标关联算法在完整的输入数据(不知道目标方向的近似)下的比较,以及与使用额外的目标方向输入信息的高级目标关联算法的比较。所有算法都在MATLAB环境和Microsoft Visual Studio - c中进行处理,并比较了所有算法的中央处理器(CPU)和图形处理器(GPU)版本。
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引用次数: 7
Combination of singular value decomposition and K-means clustering methods for topic detection on Twitter 奇异值分解与k均值聚类相结合的Twitter话题检测方法
Khumaisa Nur'Aini, Ibtisami Najahaty, Lina Hidayati, H. Murfi, S. Nurrohmah
Online social media are growing very rapidly in recent years, such as Twitter. Even the interaction and communication in the social media can reflect on the events of the real world. This causes the value of the information increasing significantly. However, the huge amount of the information requires a method of automatically detecting topics, one of which is the K-means Clustering. Moreover, the large dimensions of data become obstacles. So, we used singular value decomposition (SVD) to reduce the dimension of the data prior to the learning process using the K-means Clustering. The accuracy of the combination of SVD and K-means Clustering methods showed comparative results, while the computation time required is likely to be faster than the method of K-means Clustering without any reduction in advance.
近年来,在线社交媒体发展非常迅速,比如Twitter。即使是社交媒体上的互动和交流,也可以反映现实世界的事件。这导致信息的价值显著增加。然而,海量的信息需要一种自动检测主题的方法,其中一种方法就是K-means聚类。此外,数据的大维度也成为障碍。因此,我们使用奇异值分解(SVD)在使用K-means聚类学习过程之前降低数据的维数。SVD与K-means聚类方法相结合的准确率比较好,但所需的计算时间可能比K-means聚类方法更快,且没有提前降低。
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引用次数: 44
Periodic update and automatic extraction of web data for creating a Google Earth based tool 定期更新和自动提取web数据,用于创建基于谷歌地球的工具
T. Abidin, M. Subianto, T. A. Gani, R. Ferdhiana
A lot of tropical disease cases that occurred in Indonesia are reported online in Indonesian news portals. Online news portals are now becoming great sources of information because online news articles are updated frequently. A rule-based, combined with machine learning algorithm, to identify the location of the cases has been developed. In this paper, a complete flow to routinely search, crawl, clean, classify, extract, and integrate the extracted entities into Google Earth is presented. The algorithm is started by searching for Indonesian news articles using a set of selected queries and Google Site Search API, and then crawling them. After the articles are crawled, they are cleaned and classified. The articles that discuss about tropical disease cases (classified as positive) are further examined to extract the locution of the incidence and to determine the sentences containing the date of occurrence and the number of casualties. The extracted entities are then stored in a relational database and annotated in an XML keyhole markup language notation to create a geographic visualization in Google Earth. The evaluation shows that it takes approximately 6 minutes to search, crawl, clean, classify, extract, and annotate the extracted entities into an XML keyhole markup language notation from 5 Web articles. In other words, it takes about 72.40 seconds to process a new page.
印度尼西亚新闻门户网站在网上报道了许多发生在印度尼西亚的热带疾病病例。在线新闻门户网站现在正成为重要的信息来源,因为在线新闻文章经常更新。一种基于规则的,结合机器学习算法,来识别案例的位置已经开发出来。本文给出了常规搜索、抓取、清理、分类、提取并将提取的实体整合到Google Earth中的完整流程。该算法首先使用一组选定的查询和谷歌网站搜索API搜索印尼新闻文章,然后对它们进行爬行。在抓取文章后,对其进行清理和分类。对讨论热带病病例(分类为阳性)的文章进行进一步检查,以提取发病率的措辞,并确定包含发生日期和伤亡人数的句子。然后将提取的实体存储在关系数据库中,并用XML keyhole标记语言符号进行注释,以便在Google Earth中创建地理可视化。评估表明,从5篇Web文章中搜索、抓取、清理、分类、提取并将提取的实体标注为XML keyhole标记语言符号大约需要6分钟。换句话说,处理一个新页面大约需要72.40秒。
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引用次数: 1
Knowledge representation system for copula sentence in Bahasa Indonesia based on Web Ontology Language (OWL) 基于Web本体语言(OWL)的印尼语联结句知识表示系统
D. E. Cahyani, R. Manurung, Rahmad Mahendra
Now the knowledge source in natural language text are available in large quantities. There is an increasing need of knowledge representation, then it would require the knowledge processing on text automatically. The previous research has built on knowledge representation system of natural language text that is OWLizr. However, this study has not been able to handle the knowledge representation in concepts that describe a particular object. This paper developed a knowledge representation system in copula sentences containing concepts in Bahasa Indonesia. If the concept can be handled then the relationship between concepts with components of existing ontology can defined. This supports ontology engineering process that build domain ontology by enrich knowledge of the existing knowledge base. This system combine NLP (Natural Language Processing) techniques and OWL (Web Ontology Language) to model the knowledge contained in the copula sentence. The testing in this system is by unit testing and testing on collection of sentences which adapted from Wikipedia. The results of this research are system can represent knowledge in copula sentences containing concepts in Bahasa Indonesia. The system can generate output in OWL knowledge base that can share and reuse for other systems.
目前,自然语言文本中的知识来源已经非常丰富。人们对知识表示的需求越来越大,这就要求对文本进行知识自动处理。以往的研究建立在自然语言文本的知识表示系统OWLizr之上。然而,本研究尚未能够处理描述特定对象的概念中的知识表示。本文开发了印尼语包含概念的联结句知识表示系统。如果概念可以处理,那么概念与现有本体组件之间的关系就可以定义。这支持本体工程过程,通过丰富现有知识库的知识来构建领域本体。该系统结合NLP(自然语言处理)技术和OWL (Web Ontology Language)技术对联结句中包含的知识进行建模。系统的测试采用单元测试和基于维基百科的句子集测试两种方式。本研究结果表明,系统可以用印尼语中包含概念的联结句来表示知识。该系统可以在OWL知识库中生成输出,供其他系统共享和重用。
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引用次数: 3
Sleep stages classification using shallow classifiers 使用浅分类器对睡眠阶段进行分类
Endang Purnama Giri, A. M. Arymurthy, M. I. Fanany, S. Wijaya
A person with sleep disorder such as apnea will stop breathing for a while during sleep. If frequently occurs, sleep disorder is dangerous for health. An early step for diagnosing apnea is by classifying the sleep stages during sleep. This study explores some shallow classifiers and their feasibility applied to sleep data. Recently, a sleep stages classification system that use deep unsupervised features learning representations have been proposed [9]. In our view, an adequate study on this problem using shallow classifiers still need to be investigated. This study, using some of the data on [9], focuses on evaluating some shallow classifier to the sleep stages classification problem. This study evaluates five classifiers: SVM, Neural Network, Classification Tree, k-Nearest Neighborhood (k-NN), and Naive Bayes. Experiment result shows that neural network gives best performance for sleep stage classification problem. Compared to the SVM (the 2-nd rank of accuracy on S000 data), the neural network is also more efficient than SVM in term of computational time and memory requirement.
患有睡眠障碍的人,如呼吸暂停,会在睡眠中停止呼吸一段时间。如果经常发生,睡眠障碍对健康是危险的。诊断呼吸暂停的早期步骤是对睡眠中的睡眠阶段进行分类。本研究探讨了一些浅分类器及其在睡眠数据中的可行性。最近,一种使用深度无监督特征学习表征的睡眠阶段分类系统被提出[9]。在我们看来,使用浅分类器对这一问题进行充分的研究仍需进一步研究。本研究利用[9]上的部分数据,重点评价了一些浅分类器对睡眠阶段的分类问题。本研究评估了五种分类器:支持向量机、神经网络、分类树、k-近邻(k-NN)和朴素贝叶斯。实验结果表明,神经网络在睡眠阶段分类问题上表现最好。相对于SVM(在S000个数据上的2级精度),神经网络在计算时间和内存需求方面也比SVM更高效。
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引用次数: 13
Children's and adults' schemes in categorization of basic objects and mobile applications 儿童和成人的基本对象和移动应用程序分类方案
L. Punchoojit, Nuttanont Hongwarittorrn
Diversity of users has become recent design concerns, and children are one of those user groups. Organization of contents is one of research areas in designing for children. Research suggests differences in abilities between adults and children; for instance, attention, logic and memory skills, and linguistic abilities. This is related to the way children navigate and access information. Efficient system organization must correspond with user's categorization scheme. Prior study suggests differences in the way children categorized objects than the predetermined categories; however, it did not provide a comparison between children and adults in the way they generated the categories. Moreover, influence of expertise on categorization schemes has been highlighted in psychological literature. Primary objective of this study was to investigate how children and adults utilize categorization schemes based on their domain expertise. This study was carried out under two different circumstances: 1) when the objects were concrete and both age groups were domain experts, and 2) when objects were more abstract and both age groups could be either novices or experts. Similarity and differences between adults and children were found. The results of both tasks showed indicated that categorization schemes employed by participants depends on the information they were exposed to.
用户的多样性已成为最近设计关注的问题,儿童就是其中一个用户群体。内容组织是儿童设计的研究领域之一。研究表明,成人和儿童在能力上存在差异;例如,注意力、逻辑和记忆力以及语言能力。这与儿童浏览和获取信息的方式有关。有效的系统组织必须与用户的分类方案相对应。先前的研究表明,儿童对物体进行分类的方式与预先确定的类别不同;然而,它没有提供儿童和成人在他们产生分类的方式之间的比较。此外,心理学文献也强调了专业知识对分类方案的影响。本研究的主要目的是调查儿童和成人如何利用基于他们的领域专业知识的分类方案。本研究在两种不同的情况下进行:1)对象是具体的,两个年龄组都是领域专家;2)对象是更抽象的,两个年龄组都可以是新手或专家。发现了成人和儿童之间的相似点和不同点。两项任务的结果表明,参与者采用的分类方案取决于他们所接触的信息。
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引用次数: 1
期刊
2015 International Conference on Advanced Computer Science and Information Systems (ICACSIS)
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