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Branched mannan and xyloglucan as a dynamic duo in plant cell walls 甘露聚糖和木葡聚糖在植物细胞壁中的动态组合
Q1 Immunology and Microbiology Pub Date : 2023-01-25 DOI: 10.1016/j.tcsw.2023.100098
Annika Grieß-Osowski , Cătălin Voiniciuc
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引用次数: 1
Insights into pectin O-acetylation in the plant cell wall: structure, synthesis, and modification 植物细胞壁果胶O-乙酰化的结构、合成和修饰
Q1 Immunology and Microbiology Pub Date : 2023-01-25 DOI: 10.1016/j.tcsw.2023.100099
Lubana Shahin , Liang Zhang , Debra Mohnen , Breeanna R. Urbanowicz

O-Acetyl esterification is an important structural and functional feature of pectins present in the cell walls of all land plants. The amount and positions of pectin acetyl substituents varies across plant tissues and stages of development. Plant growth and response to biotic and abiotic stress are known to be significantly influenced by pectin O-acetylation. Gel formation is a key characteristic of pectins, and many studies have shown that gel formation is dependent upon the degree of acetylation. Previous studies have indicated that members of the TRICHOME BIREFRINGENCE-LIKE (TBL) family may play a role in the O-acetylation of pectin, however, biochemical evidence for acceptor specific pectin acetyltransferase activity remains to be confirmed and the exact mechanism(s) for catalysis must be determined. Pectin acetylesterases (PAEs) affect pectin acetylation as they hydrolyze acetylester bonds and have a role in the amount and distribution of O-acetylation. Several mutant studies suggest the critical role of pectin O-acetylation; however, additional research is required to fully understand this. This review aims to discuss the importance, role, and putative mechanism of pectin O-acetylation.

O-乙酰酯化是所有陆地植物细胞壁中存在的果胶的一个重要结构和功能特征。果胶乙酰基取代基的数量和位置因植物组织和发育阶段而异。已知果胶O-乙酰化对植物生长和对生物和非生物胁迫的反应有显著影响。凝胶形成是果胶的一个关键特征,许多研究表明,凝胶形成取决于乙酰化程度。先前的研究表明,TRICHOME二萜类(TBL)家族成员可能在果胶的O-乙酰化中发挥作用,然而,受体特异性果胶乙酰转移酶活性的生化证据仍有待证实,必须确定催化的确切机制。果胶乙酰酯酶(PAEs)影响果胶乙酰化,因为它们水解乙酰酯键,并在O-乙酰化的量和分布中发挥作用。一些突变研究表明果胶O-乙酰化的关键作用;然而,还需要更多的研究来充分理解这一点。本文旨在探讨果胶O-乙酰化的重要性、作用和推测的机制。
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引用次数: 3
Carrageenan biosynthesis in red algae: A review 红藻中卡拉胶的生物合成研究进展
Q1 Immunology and Microbiology Pub Date : 2023-01-21 DOI: 10.1016/j.tcsw.2023.100097
Antonin Chevenier, Diane Jouanneau, Elizabeth Ficko-Blean

In this review, we summarize the current state of knowledge on the biosynthesis of carrageenan by exploring both the enzyme activities and their localizations. Genomic data, with the sequencing of the genome of Chondrus crispus and the first transcriptomic study into the life cycle stages of this organism, as well as fine carbohydrate structural determination of matrix glycans, provide leads in the study of carrageenan anabolism. Comparison to related carbohydrate-active enzymes, detailed phylogenies alongside classic histochemical studies and radioactivity assays, help predict the localization of the carrageenan-related enzyme biochemistries. Using these insights, we provide an updated model of carrageenan biosynthesis which contributes to understanding the ancestral pathway of sulfated polysaccharide biosynthesis in eukaryotes.

在这篇综述中,我们通过探索卡拉胶的酶活性及其定位,总结了卡拉胶生物合成的知识现状。基因组数据,包括脆球藻基因组测序和首次对该生物生命周期阶段的转录组学研究,以及基质聚糖的精细碳水化合物结构测定,为卡拉胶合成代谢的研究提供了线索。与相关碳水化合物活性酶的比较,详细的系统发育以及经典的组织化学研究和放射性测定,有助于预测卡拉胶相关酶生物化学的定位。利用这些见解,我们提供了卡拉胶生物合成的最新模型,这有助于理解真核生物中硫酸多糖生物合成的祖先途径。
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引用次数: 2
Cell wall regulation by carbon allocation and sugar signaling 碳分配和糖信号对细胞壁的调节
Q1 Immunology and Microbiology Pub Date : 2023-01-13 DOI: 10.1016/j.tcsw.2023.100096
Delphine Pottier , Thomas Roitsch , Staffan Persson
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引用次数: 0
Understanding Aspergillus fumigatus galactosaminogalactan biosynthesis: A few questions remain 了解烟曲霉氨基半乳聚糖生物合成:仍有几个问题
Q1 Immunology and Microbiology Pub Date : 2023-01-07 DOI: 10.1016/j.tcsw.2023.100095
François Le Mauff , Donald C. Sheppard

Half a century after their discovery, polymers of N-acetylgalactosamine produced by the Aspergilli have garnered new interest as mediators of fungal virulence. Recent work has focused on the Aspergillus fumigatus secreted and cell wall-associated heteropolymer, galactosaminogalactan (GAG). This polymer, composed of galactose (Gal) and partially deacetylated N-acetylgalactosamine (GalNAc), plays a role in a variety of pathogenic processes including biofilm formation, immune modulation and evasion, and resistance to antifungals. Given its many potential contributions to fungal pathogenesis, GAG is a promising therapeutic target for novel antifungal strategies. As such, several studies have sought to elucidate the biosynthetic pathways required for GAG production and secretion. Herein we review the progress made in the understanding of the molecular mechanisms underlying GAG synthesis and identify several gaps in our understanding of this process.

在他们发现半个世纪后,由Aspergilli产生的N-乙酰氨基半乳糖的聚合物作为真菌毒力的介质引起了新的兴趣。最近的工作集中在烟曲霉分泌的和细胞壁相关的杂聚物,氨基半乳聚糖(GAG)。这种聚合物由半乳糖(Gal)和部分脱乙酰基的N-乙酰半乳糖胺(GalNAc)组成,在多种致病过程中发挥作用,包括生物膜形成、免疫调节和逃避以及抗真菌药物耐药性。鉴于其对真菌发病机制的许多潜在贡献,GAG是新的抗真菌策略的一个有前途的治疗靶点。因此,一些研究试图阐明GAG产生和分泌所需的生物合成途径。在此,我们回顾了在理解GAG合成的分子机制方面取得的进展,并确定了我们对这一过程理解中的几个差距。
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引用次数: 3
The EXTENSIN enigma EXTENSIN之谜
Q1 Immunology and Microbiology Pub Date : 2023-01-06 DOI: 10.1016/j.tcsw.2023.100094
Steven Moussu , Gwyneth Ingram

EXTENSINS (EXTs) are an abundant and yet enigmatic class of cell wall proteins that are found across multicellular plant lineages, from Bryophytes to Angiosperms. They have been shown to be integrated within the cell wall matrix, and are proposed to play key roles in the dynamic regulation of cell-wall properties. Consistent with this, EXTs are thought to be important for plant growth and development. However, like many other classes of cell wall proteins, EXTs are biochemically complex, highly diverse, and are encoded by multiple genes, making in-depth functional characterization a challenging undertaking. Here we will provide an overview of current knowledge of the biochemistry and properties of EXTs, and of the tools that have been deployed to study their biological functions in plants.

EXTs是一类丰富而神秘的细胞壁蛋白,存在于从苔藓植物到被子植物的多细胞植物谱系中。它们已被证明整合在细胞壁基质中,并被认为在细胞壁特性的动态调节中发挥关键作用。与此相一致的是,EXT被认为对植物生长发育很重要。然而,与许多其他类别的细胞壁蛋白一样,EXT在生物化学上是复杂的、高度多样的,并且由多个基因编码,这使得深入的功能表征成为一项具有挑战性的工作。在这里,我们将概述EXTs的生物化学和特性的当前知识,以及用于研究其在植物中的生物功能的工具。
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引用次数: 6
Characterizing the role of phosphatidylglycerol-phosphate phosphatases in Acinetobacter baumannii cell envelope biogenesis and antibiotic resistance 磷脂酰甘油磷酸磷酸酶在鲍曼不动杆菌细胞包膜生物发生和抗生素耐药性中的作用
Q1 Immunology and Microbiology Pub Date : 2022-12-10 DOI: 10.1016/j.tcsw.2022.100092
Maoge Zang , Alice Ascari , Felise G. Adams , Saleh Alquethamy , Bart A. Eijkelkamp

The dissemination of multi-drug resistant Acinetobacter baumannii threatens global healthcare systems and necessitates the development of novel therapeutic options. The Gram-negative bacterial cell envelope provides a first defensive barrier against antimicrobial assault. Essential components of this multi-layered complex are the phospholipid-rich membranes. Phosphatidylglycerol phosphate (PGP) phosphatases are responsible for a key step in the biosynthesis of a major phospholipid species, phosphatidylglycerol (PG), but these enzymes have also been implicated in the biogenesis of other cell envelope components. Our bioinformatics analyses identified two putative PGP candidates in the A. baumannii genome, PgpA and PgpB. Phospholipid analyses of isogenic pgpA mutants in two distinct A. baumannii strains revealed a shift in the desaturation levels of phosphatidylethanolamine (PE) phospholipid species, possibly due to the activation of the phospholipid desaturase DesA. We also investigated the impact of the inner membrane phosphatases on other cell envelope components, which revealed a role of PgpB in the maintenance of the A. baumannii peptidoglycan layer, and consequently carbapenem resistance. Collectively, this work provides novel insights into the roles of PGP phosphatases on the global lipidomic landscape of A. baumannii and their interconnectivity with the biogenesis of other cell envelope components. The non-essentiality of these candidates exemplifies metabolic versatility of A. baumannii, which is believed to be key to its success as global pathogen.

多重耐药鲍曼不动杆菌的传播威胁着全球医疗系统,需要开发新的治疗方案。革兰氏阴性细菌细胞包膜提供了对抗微生物攻击的第一防御屏障。这种多层复合物的基本成分是富含磷脂的膜。磷脂酰甘油磷酸(PGP)磷酸酶是主要磷脂物种磷脂酰甘油(PG)生物合成的关键步骤,但这些酶也与其他细胞包膜成分的生物发生有关。我们的生物信息学分析在鲍曼菌基因组中确定了两个推定的PGP候选者,PgpA和PgpB。对两个不同鲍曼不动杆菌菌株中等基因pgpA突变体的磷脂分析显示,磷脂酰乙醇胺(PE)磷脂物种的去饱和水平发生了变化,这可能是由于磷脂去饱和酶DesA的激活。我们还研究了内膜磷酸酶对其他细胞包膜成分的影响,这揭示了PgpB在维持鲍曼杆菌肽聚糖层中的作用,从而对碳青霉烯产生耐药性。总之,这项工作为PGP磷酸酶在鲍曼不动杆菌全球脂质组学景观中的作用及其与其他细胞包膜成分生物发生的相互关系提供了新的见解。这些候选者的非本质性证明了鲍曼不动杆菌的代谢多样性,这被认为是其作为全球病原体成功的关键。
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引用次数: 5
Fluconazole resistant Candida auris clinical isolates have increased levels of cell wall chitin and increased susceptibility to a glucosamine-6-phosphate synthase inhibitor 耐氟康唑耳念珠菌临床分离株细胞壁几丁质水平升高,对氨基葡萄糖-6-磷酸合成酶抑制剂的敏感性增加
Q1 Immunology and Microbiology Pub Date : 2022-12-01 DOI: 10.1016/j.tcsw.2022.100076
Garima Shahi , Mohit Kumar , Andrzej S. Skwarecki , Matt Edmondson , Atanu Banerjee , Jane Usher , Neil A.R. Gow , Sławomir Milewski , Rajendra Prasad

In 2009 Candida auris was first isolated as fungal pathogen of human disease from ear canal of a patient in Japan. In less than a decade, this pathogen has rapidly spread around the world and has now become a major health challenge that is of particular concern because many strains are resistant to multiple class of antifungal drugs. The lack of available antifungals and rapid increase of this fungal pathogen provides an incentive for the development of new and more potent anticandidal drugs and drug combinatorial treatments. Here we have explored the growth inhibitory activity against C. auris of a synthetic dipeptide glutamine analogue, L-norvalyl-N3-(4-methoxyfumaroyl)-L-2,3- diaminopropanoic acid (Nva-FMDP), that acts as an inhibitor of glucosamine-6-phosphate (GlcN-6-P) synthase - a key enzyme in the synthesis of cell wall chitin. We observed that in contrast to FLC susceptible isolates of C. auris, FLC resistant isolates had elevated cell wall chitin and were susceptible to inhibition by Nva-FMDP. The growth kinetics of C. auris in RPMI-1640 medium revealed that the growth of FLC resistant isolates were 50–60% more inhibited by Nva-FMDP (8 μ g/ml) compared to a FLC susceptible isolate. Fluconazole resistant strains displayed increased transcription of CHS1, CHS2 and CHS3, and the chitin content of the fluconazole resistant strains was reduced following the Nva-FMDP treatment. Therefore, the higher chitin content in FLC resistant C. auris isolates may make the strain more susceptible to inhibition of the antifungal activity of the Nva-FMDP peptide conjugate.

2009年,日本首次从一名患者的耳道中分离出耳念珠菌作为人类疾病的真菌病原体。在不到十年的时间里,这种病原体在世界各地迅速传播,现在已成为一个特别令人关注的主要健康挑战,因为许多菌株对多种抗真菌药物具有耐药性。现有抗真菌药物的缺乏和这种真菌病原体的迅速增加为开发新的和更有效的抗真菌药物和药物组合治疗提供了动力。本文研究了一种合成的二肽谷氨酰胺类似物l-正戊酰- n3 -(4-甲氧基富马酰)- l- 2,3-二氨基丙酸(nfa - fmdp)对C. auris的生长抑制活性,该物质作为葡萄糖胺-6-磷酸(GlcN-6-P)合成酶的抑制剂,而葡萄糖胺-6-磷酸(GlcN-6-P)合成酶是细胞壁几丁质的合成关键酶。我们观察到,与FLC敏感菌株相比,FLC耐药菌株细胞壁几丁质升高,易受Nva-FMDP的抑制。结果表明,Nva-FMDP (8 μ g/ml)对FLC耐药菌株的生长抑制作用比FLC敏感菌株高50 ~ 60%。氟康唑耐药菌株CHS1、CHS2和CHS3转录增加,Nva-FMDP处理后氟康唑耐药菌株几丁质含量降低。因此,耐FLC金黄色葡萄球菌中较高的几丁质含量可能使菌株更容易受到Nva-FMDP肽偶联物抗真菌活性的抑制。
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引用次数: 9
Discovery, mode of action and secretion of Burkholderia sensu lato key antimicrobial specialised metabolites 发现,作用方式和分泌感氏伯克氏菌关键抗菌专门代谢物
Q1 Immunology and Microbiology Pub Date : 2022-12-01 DOI: 10.1016/j.tcsw.2022.100081
Yoana D. Petrova , Eshwar Mahenthiralingam

Burkholderia sensu lato bacteria have genomes rich in biosynthetic gene clusters (BGCs) encoding for multiple bioactive specialised metabolites. Diverse classes of antimicrobial natural products have been isolated from Burkholderia, including polyynes, shikimate pathway derivatives, polyketides, non-ribosomal peptides and hybrid polyketide non-ribosomal peptides. We highlight examples of Burkholderia metabolites, overviewing their biosynthesis, bioactivity, mechanisms of action and secretion.

伯克霍尔德氏菌具有丰富的生物合成基因簇(BGCs)基因组,编码多种生物活性的特殊代谢物。从伯克霍尔德菌中分离出了多种类型的抗菌天然产物,包括多烯类、shikimate途径衍生物、多酮类、非核糖体肽和杂交多酮类非核糖体肽。我们重点介绍了伯克霍尔德菌代谢物的例子,概述了它们的生物合成、生物活性、作用机制和分泌。
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引用次数: 0
The nature of the fungal cargo induces significantly different temporal programmes of macrophage phagocytosis 真菌货物的性质引起巨噬细胞吞噬的显著不同的时间程序
Q1 Immunology and Microbiology Pub Date : 2022-12-01 DOI: 10.1016/j.tcsw.2022.100082
María Fernanda Alonso , Judith M. Bain , Fiona M. Rudkin , Lars P. Erwig , Alistair J.P. Brown , Neil A.R. Gow

Phagocytosis is an essential component of our immune defence against fungal pathogens. Differences in the dynamics of phagocyte migration, recognition, uptake and phagolysosome maturation are dependent on the characteristics of the fungal cargo, and in particular to differences in cell wall composition and cellular morphology. However, studies that have focused on phagocyte interactions with individual fungal species have not enabled comparisons in the kinetics of these interactions to be made between these different species. We therefore used live cell video microscopy to examine the temporal dynamics of phagocytosis for a range of fungal cargoes by thioglycollate–elicited peritoneal macrophages from C57BL/6 mice. Uniform populations of macrophages were challenged at the same time with yeast cells of Candida albicans, Candida glabrata, Saccharomyces cerevisiae and Cryptococcus neoformans (wild–type and an acapsular mutant, cap59Δ), and spores of Aspergillus fumigatus and Mucor circinelloides to enable standardized comparative interactions to be quantified from different stages of phagocytosis. Differences in the rate of uptake of fungal cells varied by up to 26–fold, whilst differences in time to induce phagosome acidification varied by as much as 29–fold. Heat-killing or opsonizing the fungal targets markedly affected the kinetics of the interaction in a species–specific manner. Fungal and macrophage killing assays further revealed cargo–specific differences in phagocytosis and diversity in fungal evasion mechanisms. Therefore, simultaneous assessment of the interaction of macrophages with different fungal pathogens highlighted major differences in the kinetics and growth responses during fungus–phagocyte interactions that are likely to impact on pathogenesis and virulence.

吞噬作用是我们免疫防御真菌病原体的重要组成部分。吞噬细胞迁移、识别、摄取和吞噬溶酶体成熟的动力学差异取决于真菌货物的特征,特别是细胞壁组成和细胞形态的差异。然而,专注于吞噬细胞与单个真菌物种相互作用的研究并没有使这些不同物种之间相互作用的动力学进行比较。因此,我们使用活细胞视频显微镜检查巯基乙酸引发的C57BL/6小鼠腹腔巨噬细胞对一系列真菌货物的吞噬时间动态。同时用白色念珠菌、光秃念珠菌、酿酒酵母菌和新型隐球菌(野生型和荚膜突变体,cap59Δ)的酵母细胞以及烟曲霉和环形毛霉的孢子挑战均匀种群的巨噬细胞,以便从不同的吞噬阶段对标准化的比较相互作用进行量化。真菌细胞摄取速率的差异可达26倍,而诱导吞噬体酸化的时间差异可达29倍。热杀灭或调理真菌靶点以一种特定的方式显著影响相互作用的动力学。真菌和巨噬细胞的杀伤实验进一步揭示了货物特异性吞噬作用的差异和真菌逃避机制的多样性。因此,同时评估巨噬细胞与不同真菌病原体的相互作用,突出了真菌-吞噬细胞相互作用过程中动力学和生长反应的主要差异,这些差异可能影响发病机制和毒力。
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引用次数: 2
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