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Analysing Interrupted Time Series with a Control 带控制的中断时间序列分析
Q3 Mathematics Pub Date : 2019-05-29 DOI: 10.1515/EM-2018-0010
AnthonyG. Scott, V. Isham
Abstract Interrupted time series are increasingly being used to evaluate the population-wide implementation of public health interventions. However, the resulting estimates of intervention impact can be severely biased if underlying disease trends are not adequately accounted for. Control series offer a potential solution to this problem, but there is little guidance on how to use them to produce trend-adjusted estimates. To address this lack of guidance, we show how interrupted time series can be analysed when the control and intervention series share confounders, i. e. when they share a common trend. We show that the intervention effect can be estimated by subtracting the control series from the intervention series and analysing the difference using linear regression or, if a log-linear model is assumed, by including the control series as an offset in a Poisson regression with robust standard errors. The methods are illustrated with two examples.
中断时间序列越来越多地被用于评估全人群公共卫生干预措施的实施情况。然而,如果没有充分考虑潜在的疾病趋势,由此得出的干预影响估计可能存在严重偏差。控制序列为这个问题提供了一个潜在的解决方案,但是很少有关于如何使用它们来产生趋势调整估计的指导。为了解决这种缺乏指导的问题,我们展示了当控制和干预序列共享混杂因素时,如何分析中断时间序列。当他们有一个共同的趋势。我们表明,可以通过从干预序列中减去控制序列并使用线性回归分析差异来估计干预效果,或者,如果假设是对数线性模型,则可以通过将控制序列作为具有稳健标准误差的泊松回归中的偏移量来估计干预效果。用两个实例说明了这些方法。
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引用次数: 42
The choice of effect measure for binary outcomes: Introducing counterfactual outcome state transition parameters. 二元结果效果测度的选择:引入反事实结果状态转换参数。
Q3 Mathematics Pub Date : 2018-12-01 Epub Date: 2018-07-27 DOI: 10.1515/em-2016-0014
Anders Huitfeldt, Andrew Goldstein, Sonja A Swanson

Standard measures of effect, including the risk ratio, the odds ratio, and the risk difference, are associated with a number of well-described shortcomings, and no consensus exists about the conditions under which investigators should choose one effect measure over another. In this paper, we introduce a new framework for reasoning about choice of effect measure by linking two separate versions of the risk ratio to a counterfactual causal model. In our approach, effects are defined in terms of "counterfactual outcome state transition parameters", that is, the proportion of those individuals who would not have been a case by the end of follow-up if untreated, who would have responded to treatment by becoming a case; and the proportion of those individuals who would have become a case by the end of follow-up if untreated who would have responded to treatment by not becoming a case. Although counterfactual outcome state transition parameters are generally not identified from the data without strong monotonicity assumptions, we show that when they stay constant between populations, there are important implications for model specification, meta-analysis, and research generalization.

标准的效果衡量标准,包括风险比、比值比和风险差,与许多被充分描述的缺点有关,对于研究人员应该选择一种效果衡量标准而不是另一种效果测量标准的条件,没有达成共识。在本文中,我们引入了一个新的框架,通过将风险比的两个不同版本与反事实因果模型联系起来,来推理效果度量的选择。在我们的方法中,效应是根据“反事实结果-状态转换参数”来定义的,即如果不治疗,在随访结束时不会成为病例的个体的比例,他们会通过成为病例来对治疗做出反应;以及如果不治疗,在随访结束时会成为病例的人中,对治疗有反应的人不会成为病例的比例。尽管在没有强单调性假设的情况下,通常不会从数据中识别出反事实的结果-状态转换参数,但我们表明,当它们在人群之间保持不变时,对模型规范、荟萃分析和研究概括具有重要意义。
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引用次数: 14
Estimating Case-Fatality Reduction from Randomized Screening Trials 从随机筛选试验中估计病死率降低
Q3 Mathematics Pub Date : 2018-11-07 DOI: 10.1515/EM-2018-0007
S. Saha, Z. Liu, O. Saarela
Abstract In randomized cancer screening trials where asymptomatic individuals are assigned to undergo a regimen of screening examinations or standard care, the primary objective typically is to estimate the effect of screening assignment on cancer-specific mortality by carrying out an ’intention-to-screen’ analysis. However, most of the participants in the trial will be cancer-free; only those developing a genuine cancer that is screening-detectable can potentially benefit from screening induced early treatments. Here we consider measuring the effect of early treatments in this partially latent subpopulation in terms of reduction in case fatality. To formalize the estimands and identifying assumptions in a causal modeling framework, we first define two measures, namely proportional and absolute case-fatality reduction, using potential outcomes notation. We re-derive an earlier proposed estimator for the former, and propose a new estimator for the latter motivated by the instrumental variable approach. The methods are illustrated using data from the US National Lung Screening Trial, with specific attention to estimation in the presence of censoring and competing risks.
在随机癌症筛查试验中,无症状个体被分配接受筛查检查或标准护理方案,主要目标通常是通过进行“意向筛查”分析来估计筛查分配对癌症特异性死亡率的影响。然而,试验中的大多数参与者都没有癌症;只有那些真正的癌症可以通过筛查检测到的人才有可能从筛查诱导的早期治疗中获益。在这里,我们考虑从降低病死率的角度来衡量在这个部分潜伏亚群中早期治疗的效果。为了形式化估计并确定因果建模框架中的假设,我们首先使用潜在结果符号定义了两种测量方法,即比例和绝对病死率降低。我们对前者重新推导了先前提出的估计量,并在工具变量方法的激励下对后者提出了一个新的估计量。这些方法使用来自美国国家肺筛查试验的数据进行说明,特别注意在审查和竞争风险存在的情况下进行估计。
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引用次数: 2
The Pseudo-Observation Analysis of Time-To-Event Data. Example from the Danish Diet, Cancer and Health Cohort Illustrating Assumptions, Model Validation and Interpretation of Results 事件时间数据的伪观测分析。以丹麦饮食、癌症和健康队列为例,说明假设、模型验证和结果解释
Q3 Mathematics Pub Date : 2018-10-16 DOI: 10.1515/EM-2017-0015
L. M. Mortensen, C. P. Hansen, K. Overvad, S. Lundbye-Christensen, E. Parner
Abstract Regression analyses for time-to-event data are commonly performed by Cox regression. Recently, an alternative method, the pseudo-observation method, has been introduced. This method offers new possibilities of analyzing data exploring cumulative risks on both a multiplicative and an additive risk scale, in contrast to the multiplicative Cox regression model for hazard rates. Hence, the pseudo-observation method enables assessment of interaction on an additive scale. However, the pseudo-observation method implies more strict model assumptions regarding entry and censoring but avoids the assumption of proportional hazards (except from combined analyses of several time intervals where assumptions of constant hazard ratios, risk differences and relative risks may be imposed). Only few descriptions of the use of the method are accessible for epidemiologists. In this paper, we present the pseudo-observation method from a user-oriented point of view aiming at facilitating the use of this relatively new analytical tool. Using data from the Diet, Cancer and Health Cohort we give a detailed example of the application of the pseudo-observation method on time-to-event data with delayed entry and right censoring. We discuss model control and suggest analytic strategies when assumptions are not met. The introductory model control in the data example showed that data did not fulfill the assumptions of the pseudo-observation method. This was caused by selection of healthier participants at older baseline ages and a change in the distribution of study participants according to outcome risk during the inclusion period. Both selection effects need to be addressed in any time-to-event analysis and we show how these effects are accounted for in the pseudo-observation analysis. The pseudo-observation method provides us with a statistical tool which makes it possible to analyse cohort data on both multiplicative and additive risk scales including assessment of biological interaction on the risk difference scale. Thus, it might be a relevant choice of method – especially if the focus is to investigate interaction from a public health point of view.
摘要对事件时间数据的回归分析通常采用Cox回归。最近,一种替代方法——伪观察法被引入。与危险率的乘法Cox回归模型相比,该方法为在乘法和加性风险尺度上分析数据探索累积风险提供了新的可能性。因此,伪观测方法能够在加性尺度上评估相互作用。然而,伪观测方法意味着对进入和审查的更严格的模型假设,但避免了比例风险的假设(除了对几个时间间隔的组合分析,其中可能会施加恒定的风险比、风险差异和相对风险的假设)。流行病学家只能获得很少的关于该方法使用的说明。在本文中,我们从面向用户的角度提出了伪观测方法,旨在促进这种相对较新的分析工具的使用。利用来自饮食、癌症和健康队列的数据,我们给出了伪观察方法在延迟输入和正确审查的事件时间数据上的应用的详细示例。我们讨论模型控制,并提出分析策略,当假设不满足。数据示例中的引入模型控制表明,数据不满足伪观测方法的假设。这是由于选择了基线年龄较大的健康参与者,以及根据纳入期间的结果风险,研究参与者的分布发生了变化。这两种选择效应都需要在任何时间到事件的分析中解决,我们展示了这些效应是如何在伪观察分析中被解释的。伪观察法为我们提供了一种统计工具,使我们能够分析乘法和加性风险量表上的队列数据,包括评估风险差异量表上的生物相互作用。因此,这可能是一种相关的方法选择——特别是如果重点是从公共卫生的角度调查相互作用。
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引用次数: 6
An Instrumental Variables Design for the Effect of Emergency General Surgery 急诊普外科效果的工具变量设计
Q3 Mathematics Pub Date : 2018-10-02 DOI: 10.1515/EM-2017-0012
L. Keele, C. Sharoky, M. Sellers, C. Wirtalla, R. Kelz
Abstract Confounding by indication is a critical challenge in evaluating the effectiveness of surgical interventions using observational data. The threat from confounding is compounded when using medical claims data due to the inability to measure risk severity. If there are unobserved differences in risk severity across patients, treatment effect estimates based on methods such a multivariate regression may be biased in an unknown direction. A research design based on instrumental variables offers one possibility for reducing bias from unobserved confounding compared to risk adjustment with observed confounders. This study investigates whether a physician’s preference for operative care is a valid instrumental variable for studying the effect of emergency surgery. We review the plausibility of the necessary causal assumptions in an investigation of the effect of emergency general surgery (EGS) on inpatient mortality among adults using medical claims data from Florida, Pennsylvania, and New York in 2012–2013. In a departure from the extant literature, we use the framework of stochastic monotonicity which is more plausible in the context of a preference-based instrument. We compare estimates from an instrumental variables design to estimates from a design based on matching that assumes all confounders are observed. Estimates from matching show lower mortality rates for patients that undergo EGS compared to estimates based in the instrumental variables framework. Results vary substantially by condition type. We also present sensitivity analyses as well as bounds for the population level average treatment effect. We conclude with a discussion of the interpretation of estimates from both approaches.
根据观察数据评估手术干预的有效性时,指征混淆是一个关键的挑战。在使用医疗索赔数据时,由于无法衡量风险的严重程度,混淆的威胁更加严重。如果患者之间的风险严重程度存在未观察到的差异,则基于多变量回归等方法的治疗效果估计可能会偏向未知方向。基于工具变量的研究设计提供了一种可能性,可以减少由未观察到的混杂因素引起的偏倚,而不是由观察到的混杂因素进行风险调整。本研究探讨医师对手术护理的偏好是否为研究急诊手术效果的有效工具变量。我们利用2012-2013年佛罗里达州、宾夕法尼亚州和纽约州的医疗索赔数据,回顾了急诊普通外科手术(EGS)对成人住院患者死亡率影响的调查中必要因果假设的合理性。在与现有文献的背离中,我们使用随机单调性框架,这在基于偏好的工具的背景下更合理。我们比较了工具变量设计的估计和基于匹配的设计的估计,假设所有混杂因素都被观察到。匹配估计显示,与基于工具变量框架的估计相比,接受EGS的患者死亡率较低。结果因条件类型而有很大差异。我们还提出了敏感性分析以及总体水平平均治疗效果的界限。最后,我们讨论了两种方法对估计的解释。
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引用次数: 16
New Challenges in HIV Research: Combining Phylogenetic Cluster Size and Epidemiological Data HIV研究的新挑战:结合系统发育聚类大小和流行病学数据
Q3 Mathematics Pub Date : 2018-09-20 DOI: 10.1515/EM-2017-0017
Nabila Parveen, E. Moodie, J. Cox, G. Lambert, J. Otis, M. Roger, B. Brenner
Abstract An exciting new direction in HIV research is centered on using molecular phylogenetics to understand the social and behavioral drivers of HIV transmission. SPOT was an intervention designed to offer HIV point of care testing to men who have sex with men at a community-based site in Montreal, Canada; at the time of testing, a research questionnaire was also deployed to collect data on socio-demographic and behavioral characteristics of participating men. The men taking part in SPOT could be viewed, from the research perspective, as having been recruited via a convenience sample. Among men who were found to be HIV positive, phylogenetic cluster size was measured using a large cohort of HIV-positive individuals in the province of Quebec. The cluster size is likely subject to under-estimation. In this paper, we use SPOT data to evaluate the association between HIV transmission cluster size and the number of sex partners for MSM, after adjusting for the SPOT sampling scheme and correcting for measurement error in cluster size by leveraging external data sources. The sampling weights for SPOT participants were calculated from another study of men who have sex with men in Montreal by fitting a weight-adjusted model, whereas measurement error was corrected using the simulation-extrapolation conditional on covariates approach.
利用分子系统遗传学来了解HIV传播的社会和行为驱动因素是HIV研究的一个令人兴奋的新方向。SPOT是一项干预措施,旨在在加拿大蒙特利尔的一个社区站点为男男性行为者提供艾滋病毒护理点检测;在测试的同时,研究问卷也被用来收集参与测试的男性的社会人口统计和行为特征的数据。从研究的角度来看,参加SPOT的男性可以被视为是通过方便样本招募的。在发现HIV阳性的男性中,使用魁北克省HIV阳性个体的大型队列来测量系统发育簇大小。集群大小可能会被低估。在本文中,我们利用SPOT数据来评估艾滋病毒传播集群大小与MSM性伴侣数量之间的关系,在调整了SPOT采样方案并利用外部数据源纠正了集群大小的测量误差之后。SPOT参与者的抽样权重是根据另一项对蒙特利尔男男性行为者的研究,通过拟合一个体重调整模型计算出来的,而测量误差是使用协变量方法的模拟外推条件来修正的。
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引用次数: 3
Propensity Score Estimation Using Classification and Regression Trees in the Presence of Missing Covariate Data 在协变量数据缺失的情况下使用分类和回归树进行倾向评分估计
Q3 Mathematics Pub Date : 2018-07-25 DOI: 10.1515/em-2017-0020
Bas B L Penning de Vries, M. van Smeden, R. Groenwold
Abstract Data mining and machine learning techniques such as classification and regression trees (CART) represent a promising alternative to conventional logistic regression for propensity score estimation. Whereas incomplete data preclude the fitting of a logistic regression on all subjects, CART is appealing in part because some implementations allow for incomplete records to be incorporated in the tree fitting and provide propensity score estimates for all subjects. Based on theoretical considerations, we argue that the automatic handling of missing data by CART may however not be appropriate. Using a series of simulation experiments, we examined the performance of different approaches to handling missing covariate data; (i) applying the CART algorithm directly to the (partially) incomplete data, (ii) complete case analysis, and (iii) multiple imputation. Performance was assessed in terms of bias in estimating exposure-outcome effects among the exposed, standard error, mean squared error and coverage. Applying the CART algorithm directly to incomplete data resulted in bias, even in scenarios where data were missing completely at random. Overall, multiple imputation followed by CART resulted in the best performance. Our study showed that automatic handling of missing data in CART can cause serious bias and does not outperform multiple imputation as a means to account for missing data.
数据挖掘和机器学习技术,如分类和回归树(CART)代表了传统逻辑回归对倾向评分估计的一个有希望的替代方案。虽然不完整的数据排除了对所有受试者进行逻辑回归的拟合,但CART之所以吸引人,部分原因是一些实现允许将不完整的记录纳入树拟合中,并为所有受试者提供倾向得分估计。基于理论上的考虑,我们认为CART对丢失数据的自动处理可能并不合适。通过一系列模拟实验,我们检验了处理缺失协变量数据的不同方法的性能;(i)将CART算法直接应用于(部分)不完整的数据,(ii)完整的案例分析,以及(iii)多次插值。评估的标准是评估暴露者的暴露-结果效应偏差、标准误差、均方误差和覆盖率。将CART算法直接应用于不完整的数据会导致偏差,即使在数据完全随机丢失的情况下也是如此。总体而言,多次插补后进行CART的效果最好。我们的研究表明,自动处理CART中缺失的数据可能会导致严重的偏差,并且作为一种解释缺失数据的手段,多重输入的效果并不好。
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引用次数: 8
Mediation Analysis with Attributable Fractions 可归因分数的中介分析
Q3 Mathematics Pub Date : 2018-04-13 DOI: 10.1515/EM-2017-0010
A. Sjölander
Abstract The attributable fraction is a common measure in epidemiological research, which quantifies the public health impact of a particular exposure on a particular outcome. Often, the exposure effect may be mediated through a third variable, which lies on the causal pathway between the exposure and the outcome. To assess the role of such mediators we propose a decomposition of the attributable fraction into a direct component and a mediated component. We show how these components can be estimated in cross-sectional, cohort and case-control studies, using either maximum likelihood or doubly robust estimation methods. We illustrate the proposed methods by an application to a study of physical activity, overweight and CVD. In an Appendix we provide R-code, which implements the proposed methods.
归因分数是流行病学研究中常用的测量方法,它量化了特定暴露对特定结果的公共卫生影响。通常,暴露效应可以通过第三个变量来调节,这是暴露与结果之间的因果关系。为了评估这些中介的作用,我们建议将归因分数分解为直接成分和中介成分。我们展示了如何在横断面、队列和病例对照研究中使用最大似然或双稳健估计方法来估计这些成分。我们通过一个应用于体力活动、超重和心血管疾病的研究来说明所提出的方法。在附录中,我们提供了r代码,它实现了所提出的方法。
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引用次数: 6
Identification of Spikes in Time Series 时间序列中峰值的识别
Q3 Mathematics Pub Date : 2018-01-24 DOI: 10.1515/em-2018-0005
D. Goin, J. Ahern
Abstract Researchers interested in the effects of exposure spikes on an outcome need tools to identify unexpectedly high values in a time series. However, the best method to identify spikes in time series is not known. This paper aims to fill this gap by testing the performance of several spike detection methods in a simulation setting. We created simulations parameterized by monthly violence rates in nine California cities that represented different series features, and randomly inserted spikes into the series. We then compared the ability to detect spikes of the following methods: ARIMA modeling, Kalman filtering and smoothing, wavelet modeling with soft thresholding, and an iterative outlier detection method. We varied the magnitude of spikes from 10 to 50 % of the mean rate over the study period and varied the number of spikes inserted from 1 to 10. We assessed performance of each method using sensitivity and specificity. The Kalman filtering and smoothing procedure had the best overall performance. We applied each method to the monthly violence rates in nine California cities and identified spikes in the rate over the 2005–2012 period.
对暴露峰值对结果的影响感兴趣的研究人员需要工具来识别时间序列中意外的高值。然而,识别时间序列中尖峰的最佳方法尚不清楚。本文旨在通过在仿真环境中测试几种尖峰检测方法的性能来填补这一空白。我们创建了模拟,以加利福尼亚九个城市的月暴力率为参数,代表不同的系列特征,并随机插入峰值到系列中。然后,我们比较了以下方法检测峰值的能力:ARIMA建模、卡尔曼滤波和平滑、软阈值小波建模和迭代离群值检测方法。在研究期间,我们将峰值的幅度从平均速率的10%到50%不等,并将插入的峰值数量从1到10不等。我们使用敏感性和特异性来评估每种方法的性能。卡尔曼滤波平滑方法综合性能最好。我们将每种方法应用于加利福尼亚九个城市的月度暴力率,并确定了2005-2012年期间暴力率的峰值。
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引用次数: 11
Robust and Flexible Estimation of Stochastic Mediation Effects: A Proposed Method and Example in a Randomized Trial Setting. 随机中介效应的稳健和灵活估计:一种在随机试验环境下提出的方法和实例。
Q3 Mathematics Pub Date : 2018-01-01 Epub Date: 2017-12-13 DOI: 10.1515/em-2017-0007
Kara E Rudolph, Oleg Sofrygin, Wenjing Zheng, Mark J van der Laan

Background: Causal mediation analysis can improve understanding of the mechanism s underlying epidemiologic associations. However, the utility of natural direct and indirect effect estimation has been limited by the assumption of no confounder of the mediator-outcome relationship that is affected by prior exposure (which we call an intermediate confounder)--an assumption frequently violated in practice.

Methods: We build on recent work that identified alternative estimands that do not require this assumption and propose a flexible and double robust targeted minimum loss-based estimator for stochastic direct and indirect effects. The proposed method intervenes stochastically on the mediator using a distribution which conditions on baseline covariates and marginalizes over the intermediate confounder.

Results: We demonstrate the estimator's finite sample and robustness properties in a simple simulation study. We apply the method to an example from the Moving to Opportunity experiment. In this application, randomization to receive a housing voucher is the treatment/instrument that influenced moving with the voucher out of public housing, which is the intermediate confounder. We estimate the stochastic direct effect of randomization to the voucher group on adolescent marijuana use not mediated by change in school district and the stochastic indirect effect mediated by change in school district. We find no evidence of mediation.

Conclusions: Our estimator is easy to implement in standard statistical software, and we provide annotated R code to further lower implementation barriers.

背景:因果中介分析可以提高对潜在流行病学关联机制的理解。然而,自然直接和间接效应估计的效用受到受先前暴露影响的中介-结果关系没有混杂因素的假设(我们称之为中间混杂因素)的限制,这是一个在实践中经常违反的假设。方法:我们以最近的工作为基础,确定了不需要这种假设的替代估计,并提出了一个灵活的、双鲁棒的、基于随机直接和间接影响的目标最小损失估计器。所提出的方法使用一个以基线协变量为条件的分布对中介进行随机干预,并在中间混杂因素上边缘化。结果:我们在一个简单的仿真研究中证明了估计器的有限样本和鲁棒性。我们将该方法应用于“抓住机遇”实验中的一个例子。在本应用程序中,随机接收住房券是影响带着住房券离开公共住房的治疗/工具,这是中间混杂因素。我们估计了券组随机化对青少年大麻使用的随机直接效应,不受学区变化的介导,以及学区变化介导的随机间接效应。我们没有发现调解的证据。结论:我们的估计器易于在标准统计软件中实现,并且我们提供了注释的R代码,以进一步降低实现障碍。
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引用次数: 28
期刊
Epidemiologic Methods
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