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Corrigendum to "Kinetic Modeling of the Mitochondrial Energy Metabolism of Neuronal Cells: The Impact of Reduced α-Ketoglutarate Dehydrogenase Activities on ATP Production and Generation of Reactive Oxygen Species". “神经元细胞线粒体能量代谢的动力学模型:α-酮戊二酸脱氢酶活性降低对ATP生成和活性氧生成的影响”的更正。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2018-09-09 eCollection Date: 2018-01-01 DOI: 10.1155/2018/6139262
Nikolaus Berndt, Sascha Bulik, Hermann-Georg Holzhütter

[This corrects the article DOI: 10.1155/2012/757594.].

[这更正了文章DOI: 10.1155/2012/757594。]
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引用次数: 5
Epigenetic Contribution of High-Mobility Group A Proteins to Stem Cell Properties. 高迁移率A组蛋白对干细胞特性的表观遗传学贡献。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2018-04-24 eCollection Date: 2018-01-01 DOI: 10.1155/2018/3698078
Vincenzo Giancotti, Natascha Bergamin, Palmina Cataldi, Claudio Rizzi

High-mobility group A (HMGA) proteins have been examined to understand their participation as structural epigenetic chromatin factors that confer stem-like properties to embryonic stem cells (ESCs), induced pluripotent stem cells (iPSCs), and cancer stem cells (CSCs). The function of HMGA was evaluated in conjunction with that of other epigenetic factors such as histones and microRNAs (miRs), taking into consideration the posttranscriptional modifications (PTMs) of histones (acetylation and methylation) and DNA methylation. HMGA proteins were coordinated or associated with histone and DNA modification and the expression of the factors related to pluripotency. CSCs showed remarkable differences compared with ESCs and iPSCs.

高迁移率A组(HMGA)蛋白已被研究,以了解其作为结构表观遗传染色质因子的参与,赋予胚胎干细胞(ESCs)、诱导多能干细胞(iPSCs)和癌症干细胞(CSCs)干细胞样特性。考虑到组蛋白(乙酰化和甲基化)和DNA甲基化的转录后修饰(PTMs),将HMGA的功能与其他表观遗传因子如组蛋白和microrna (miRs)的功能结合起来进行评估。HMGA蛋白与组蛋白和DNA修饰以及多能性相关因子的表达协调或相关。与ESCs和iPSCs相比,CSCs表现出显著差异。
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引用次数: 8
Odontoblast-Like Cells Differentiated from Dental Pulp Stem Cells Retain Their Phenotype after Subcultivation. 牙髓干细胞分化成成牙髓细胞样细胞经继代培养后保持其表型。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2018-02-19 eCollection Date: 2018-01-01 DOI: 10.1155/2018/6853189
Paula A Baldión, Myriam L Velandia-Romero, Jaime E Castellanos

Odontoblasts, the main cell type in teeth pulp tissue, are not cultivable and they are responsible for the first line of response after dental restauration. Studies on dental materials cytotoxicity and odontoblast cells physiology require large quantity of homogenous cells retaining most of the phenotype characteristics. Odontoblast-like cells (OLC) were differentiated from human dental pulp stem cells using differentiation medium (containing TGF-β1), and OLC expanded after trypsinization (EXP-21) were evaluated and compared. Despite a slower cell growth curve, EXP-21 cells express similarly the odontoblast markers dentinal sialophosphoprotein and dentin matrix protein-1 concomitantly with RUNX2 transcripts and low alkaline phosphatase activity as expected. Both OLC and EXP-21 cells showed similar mineral deposition activity evidenced by alizarin red and von Kossa staining. These results pointed out minor changes in phenotype of subcultured EXP-21 regarding the primarily differentiated OLC, making the subcultivation of these cells a useful strategy to obtain odontoblasts for biocompatibility or cell physiology studies in dentistry.

成牙细胞是牙髓组织的主要细胞类型,是不可培养的,它们是牙齿修复后的第一道反应。牙材料细胞毒性和成牙细胞生理学的研究需要大量的均质细胞保留大部分表型特征。用含TGF-β1的分化培养基从人牙髓干细胞分化成成牙母细胞样细胞(Odontoblast-like cells, OLC),并对胰蛋白酶化后的OLC扩增(EXP-21)进行评价和比较。尽管细胞生长曲线较慢,但EXP-21细胞表达的成牙本质标记物牙本质唾液磷酸蛋白和牙本质基质蛋白-1相似,并伴随RUNX2转录物和低碱性磷酸酶活性。茜素红和von Kossa染色表明,OLC和EXP-21细胞具有相似的矿物沉积活性。这些结果表明,对于主要分化的OLC,传代培养的EXP-21细胞的表型发生了微小的变化,使这些细胞的传代培养成为获得成牙本质细胞的有效策略,用于牙科生物相容性或细胞生理学研究。
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引用次数: 46
Thrombin-Induced Calpain Activation Promotes Protease-Activated Receptor 1 Internalization. 凝血酶诱导的钙蛋白酶激活促进蛋白酶激活受体1内化。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2017-01-01 Epub Date: 2017-11-09 DOI: 10.1155/2017/1908310
Alejandro Alvarez-Arce, Irene Lee-Rivera, Edith López, Arturo Hernández-Cruz, Ana María López-Colomé

The serine protease thrombin activates Protease-Activated Receptors (PARs), a family of G-protein-coupled receptors (GPCRs) activated by the proteolytic cleavage of their extracellular N-terminal domain. Four members of this family have been identified: PAR1-4. The activation of Protease-Activated Receptor 1(PAR1), the prototype of this receptor family, leads to an increase in intracellular Ca+2 concentration ([Ca+2]i) mediated by Gq11α coupling and phospholipase C (PLC) activation. We have previously shown that the stimulation of PAR1 by thrombin promotes intracellular signaling leading to RPE cell transformation, proliferation, and migration which characterize fibroproliferative eye diseases leading to blindness. Within this context, the elucidation of the mechanisms involved in PAR1 inactivation is of utmost importance. Due to the irreversible nature of PAR1 activation, its inactivation must be efficiently regulated in order to terminate signaling. Using ARPE-19 human RPE cell line, we characterized thrombin-induced [Ca+2]i increase and demonstrated the calcium-dependent activation of μ-calpain mediated by PAR1. Calpains are a family of calcium-activated cysteine proteases involved in multiple cellular processes including the internalization of membrane proteins through clathrin-coated vesicles. We demonstrated that PAR1-induced calpain activation results in the degradation of α-spectrin by calpain, essential for receptor endocytosis, and the consequent decrease in PAR1 membrane expression. Collectively, the present results identify a novel μ-calpain-dependent mechanism for PAR1 inactivation following exposure to thrombin.

丝氨酸蛋白酶凝血酶激活蛋白酶激活受体(PARs),这是一个g蛋白偶联受体(gpcr)家族,通过细胞外n端结构域的蛋白水解裂解而激活。已确定该家族的四名成员:PAR1-4。蛋白酶激活受体1(PAR1)的激活导致细胞内Ca+2浓度([Ca+2]i)通过Gq11α偶联和磷脂酶C (PLC)激活而增加,PAR1是该受体家族的原型。我们之前已经证明凝血酶刺激PAR1促进细胞内信号传导,导致RPE细胞转化、增殖和迁移,这是纤维增生性眼病导致失明的特征。在这种情况下,阐明参与PAR1失活的机制至关重要。由于PAR1激活的不可逆性,必须有效调节其失活以终止信号传导。利用ARPE-19人RPE细胞系,我们表征了凝血酶诱导的[Ca+2]i升高,并证实了PAR1介导的μ-calpain的钙依赖性激活。钙蛋白酶是一种钙激活的半胱氨酸蛋白酶家族,参与多种细胞过程,包括通过网格蛋白包被的囊泡将膜蛋白内化。我们证明了PAR1诱导的calpain激活导致α-spectrin被calpain降解,这是受体内吞作用所必需的,并导致PAR1膜表达降低。总的来说,目前的结果确定了暴露于凝血酶后PAR1失活的一种新的μ-calpain依赖机制。
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引用次数: 7
Class-Specific Histone Deacetylase Inhibitors Promote 11-Beta Hydroxysteroid Dehydrogenase Type 2 Expression in JEG-3 Cells. 类特异性组蛋白去乙酰化酶抑制剂促进JEG-3细胞中11- β羟基类固醇脱氢酶2型的表达。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2017-01-01 Epub Date: 2017-02-21 DOI: 10.1155/2017/6169310
Katie L Togher, Louise C Kenny, Gerard W O'Keeffe

Exposure to maternal cortisol plays a crucial role in fetal organogenesis. However, fetal overexposure to cortisol has been linked to a range of short- and long-term adverse outcomes. Normally, this is prevented by the expression of an enzyme in the placenta called 11-beta hydroxysteroid dehydrogenase type 2 (11β-HSD2) which converts active cortisol to its inactive metabolite cortisone. Placental 11β-HSD2 is known to be reduced in a number of adverse pregnancy complications, possibly through an epigenetic mechanism. As a result, a number of pan-HDAC inhibitors have been examined for their ability to promote 11β-HSD2 expression. However, it is not known if the effects of pan-HDAC inhibition are a general phenomenon or if the effects are dependent upon a specific class of HDACs. Here, we examined the ability of pan- and class-specific HDAC inhibitors to regulate 11β-HSD2 expression in JEG3 cells. We find that pan-, class I, or class IIa HDAC inhibition promoted 11β-HSD2 expression and prevented cortisol or interleukin-1β-induced decrease in its expression. These results demonstrate that targeting a specific class of HDACs can promote 11β-HSD2 expression in JEG3 cells. This adds to the growing body of evidence suggesting that HDACs may be crucial in maintaining normal fetal development.

暴露于母体皮质醇在胎儿器官发生中起着至关重要的作用。然而,胎儿过度暴露于皮质醇与一系列短期和长期的不良后果有关。正常情况下,胎盘中一种名为11- β羟基类固醇脱氢酶2型(11β-HSD2)的酶的表达会阻止这种情况的发生,这种酶会将活性皮质醇转化为非活性代谢物可的松。已知胎盘11β-HSD2在许多不良妊娠并发症中减少,可能通过表观遗传机制。因此,许多泛hdac抑制剂已被检测其促进11β-HSD2表达的能力。然而,尚不清楚泛hdac抑制的影响是普遍现象还是依赖于特定类型的hdac。在这里,我们检测了泛类和类特异性HDAC抑制剂调节JEG3细胞中11β-HSD2表达的能力。我们发现pan、I类或IIa类HDAC抑制促进了11β-HSD2的表达,并阻止了皮质醇或白细胞介素-1β诱导的11β-HSD2表达的下降。这些结果表明,靶向一类特定的hdac可以促进11β-HSD2在JEG3细胞中的表达。越来越多的证据表明,hdac可能对维持胎儿正常发育至关重要。
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引用次数: 10
Thrombopoietin Secretion by Human Ovarian Cancer Cells. 人卵巢癌细胞的血小板生成素分泌。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2017-01-01 Epub Date: 2017-03-30 DOI: 10.1155/2017/1873834
Samaher Besbes, Shahid Shah, Iman Al-Dybiat, Shahsoltan Mirshahi, Helene Helfer, Haythem Najah, Caroline Fourgeaud, Marc Pocard, Ibtissem Ghedira, Jeannette Soria, Massoud Mirshahi

The thrombopoietin (TPO) gene expression in human ovary and cancer cells from patients with ovarian carcinomatosis, as well as several cancer cell lines including MDA-MB231 (breast cancer), K562 and HL60 (Leukemic cells), OVCAR-3NIH and SKOV-3 (ovarian cancer), was performed using RT PCR, real-time PCR, and gene sequencing. Human liver tissues are used as controls. The presence of TPO in the cells and its regulation by activated protein C were explored by flow cytometry. TPO content of cell extract as well as plasma of a patient with ovarian cancer was evaluated by ELISA. The functionality of TPO was performed in coculture on the basis of the viability of a TPO-dependent cell line (Ba/F3), MTT assay, and Annexin-V labeling. As in liver, ovarian tissues and all cancer cells lines except the MDA-MB231 express the three TPO-1 (full length TPO), TPO-2 (12 bp deletion), and TPO-3 (116 pb deletion) variants. Primary ovarian cancer cells as well as cancer cell lines produce TPO. The thrombopoietin production by OVCAR-3 increased when cells are stimulated by aPC. OVCAR-3 cell's supernatant can replace exogenous TPO and inhibited TPO-dependent cell line (Ba/F3) apoptosis. The thrombopoietin produced by tumor may have a direct effect on thrombocytosis/thrombosis occurrence in patients with ovarian cancer.

采用RT - PCR、real-time PCR和基因测序技术检测人卵巢和卵巢癌患者的癌细胞,以及MDA-MB231(乳腺癌)、K562和HL60(白血病细胞)、OVCAR-3NIH和SKOV-3(卵巢癌)等多种癌细胞系的血小板生成素(TPO)基因表达。人类肝脏组织作为对照。流式细胞术探讨TPO在细胞内的存在及活化蛋白C对其的调节作用。采用ELISA法测定1例卵巢癌患者细胞提取物及血浆中TPO含量。根据TPO依赖性细胞系(Ba/F3)的活力、MTT测定和Annexin-V标记,在共培养中检测TPO的功能。在肝脏、卵巢组织和除MDA-MB231外的所有癌细胞系中,均表达三种TPO-1(全长TPO)、TPO-2(缺失12 bp)和TPO-3(缺失116 pb)变体。原发性卵巢癌细胞和癌症细胞系一样产生TPO。当细胞受到aPC刺激时,OVCAR-3产生的血小板生成素增加。OVCAR-3细胞上清液可以替代外源性TPO,抑制TPO依赖性细胞株(Ba/F3)的凋亡。肿瘤产生的血小板生成素可能直接影响卵巢癌患者的血小板增多/血栓形成。
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引用次数: 9
Nesprin-2 Interacts with Condensin Component SMC2. nesprin2与冷凝素组件SMC2相互作用。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2017-01-01 Epub Date: 2017-12-27 DOI: 10.1155/2017/8607532
Xin Xing, Carmen Mroß, Linlin Hao, Martina Munck, Alexandra Herzog, Clara Mohr, C P Unnikannan, Pranav Kelkar, Angelika A Noegel, Ludwig Eichinger, Sascha Neumann

The nuclear envelope proteins, Nesprins, have been primarily studied during interphase where they function in maintaining nuclear shape, size, and positioning. We analyze here the function of Nesprin-2 in chromatin interactions in interphase and dividing cells. We characterize a region in the rod domain of Nesprin-2 that is predicted as SMC domain (aa 1436-1766). We show that this domain can interact with itself. It furthermore has the capacity to bind to SMC2 and SMC4, the core subunits of condensin. The interaction was observed during all phases of the cell cycle; it was particularly strong during S phase and persisted also during mitosis. Nesprin-2 knockdown did not affect condensin distribution; however we noticed significantly higher numbers of chromatin bridges in Nesprin-2 knockdown cells in anaphase. Thus, Nesprin-2 may have an impact on chromosomes which might be due to its interaction with condensins or to indirect mechanisms provided by its interactions at the nuclear envelope.

核膜蛋白Nesprins主要在间期被研究,在间期它们起着维持核形状、大小和定位的作用。我们分析了nesprin2在细胞间期和分裂中染色质相互作用中的作用。我们描述了nesprin2的棒状结构域中预测为SMC结构域的一个区域(aa 1436-1766)。我们证明了这个域可以与自身相互作用。此外,它还能结合凝缩蛋白的核心亚基SMC2和SMC4。在细胞周期的所有阶段都观察到这种相互作用;它在S期特别强,在有丝分裂期间也持续存在。敲低nesprin2不影响凝缩蛋白分布;然而,我们注意到,在nesprin2基因敲低的细胞后期,染色质桥的数量明显增加。因此,nesprin2可能对染色体产生影响,这可能是由于它与凝聚蛋白的相互作用,也可能是由于它在核膜上的相互作用提供的间接机制。
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引用次数: 1
Regeneration and Regrowth Potentials of Digit Tips in Amphibians and Mammals. 两栖动物和哺乳动物趾尖的再生和再生潜力。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2017-01-01 Epub Date: 2017-04-10 DOI: 10.1155/2017/5312951
Yohan Choi, Fanwei Meng, Charles S Cox, Kevin P Lally, Johnny Huard, Yong Li

Tissue regeneration and repair have received much attention in the medical field over the years. The study of amphibians, such as newts and salamanders, has uncovered many of the processes that occur in these animals during full-limb/digit regeneration, a process that is highly limited in mammals. Understanding these processes in amphibians could shed light on how to develop and improve this process in mammals. Amputation injuries in mammals usually result in the formation of scar tissue with limited regrowth of the limb/digit; however, it has been observed that the very tips of digits (fingers and toes) can partially regrow in humans and mice under certain conditions. This review will summarize and compare the processes involved in salamander limb regeneration, mammalian wound healing, and digit regeneration in mice and humans.

近年来,组织再生与修复一直是医学界关注的热点。对蝾螈和蝾螈等两栖动物的研究揭示了这些动物在全肢/手指再生过程中发生的许多过程,这一过程在哺乳动物中非常有限。了解两栖动物的这些过程可以揭示如何在哺乳动物中发展和改进这一过程。哺乳动物的截肢损伤通常导致疤痕组织的形成,肢体/手指的再生有限;然而,据观察,在某些条件下,人类和老鼠的手指(手指和脚趾)的尖端可以部分再生。本文将对蝾螈肢体再生、哺乳动物伤口愈合以及小鼠和人类手指再生的过程进行综述和比较。
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引用次数: 11
Effect of Antioxidant Water on the Bioactivities of Cells. 抗氧化水对细胞生物活性的影响。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2017-01-01 Epub Date: 2017-08-17 DOI: 10.1155/2017/1917239
Seong Gu Hwang, Ho-Sung Lee, Byung-Cheon Lee, GunWoong Bahng

It has been reported that water at the interface of a hydrophilic thin film forms an exclusion zone, which has a higher density than ordinary water. A similar phenomenon was observed for a hydrated hydrophilic ceramic powder, and water turns into a three-dimensional cell-like structure composed of high density water and low density water. This structured water appears to have a stimulative effect on plant growth. This report outlines our study of antioxidant properties of this structured water and its effect on cell bioactivities. Culturing media which were prepared utilizing this antioxidant structured water promoted the viability of RAW 264.7 macrophage cells by up to three times. The same tendency was observed for other cells including IEC-6, C2C12, and 3T3-L1. Also, the cytokine expression of the splenocytes taken from a mouse spleen increased in the same manner. The water also appears to suppress the viability of cancer cell, MCF-7. These results strongly suggest that the structured water helps the activities of normal cells while suppressing those of malignant cells.

有报道称,在亲水性薄膜的界面处,水形成了一个比普通水密度更高的禁区。在水合亲水性陶瓷粉中也观察到类似的现象,水变成由高密度水和低密度水组成的三维细胞状结构。这种结构水似乎对植物生长有促进作用。本报告概述了我们对这种结构水的抗氧化特性及其对细胞生物活性的影响的研究。利用该抗氧化结构水制备的培养基可使RAW 264.7巨噬细胞的活力提高3倍。在包括IEC-6、C2C12和3T3-L1在内的其他细胞中也观察到同样的趋势。此外,取自小鼠脾脏的脾细胞的细胞因子表达也以同样的方式增加。水似乎还能抑制癌细胞MCF-7的活力。这些结果强烈表明,结构水有助于正常细胞的活动,同时抑制恶性细胞的活动。
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引用次数: 8
Pulling a Ligase out of a "HAT": pCAF Mediates Ubiquitination of the Class II Transactivator. 从“HAT”中拔出连接酶:pCAF介导II类反激活子的泛素化。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2017-01-01 Epub Date: 2017-02-12 DOI: 10.1155/2017/8093813
Julie E Morgan, Susanna F Greer

The Class II Transactivator (CIITA) is essential to the regulation of Major Histocompatibility Class II (MHC II) genes transcription. As the "master regulator" of MHC II transcription, CIITA regulation is imperative and requires various posttranslational modifications (PTMs) in order to facilitate its role. Previously we identified various ubiquitination events on CIITA. Monoubiquitination is important for CIITA transactivity, while K63 linked ubiquitination is involved in crosstalk with ERK1/2 phosphorylation, where together they mediate cellular movement from the cytoplasm to nuclear region. Further, CIITA is also modified by degradative K48 polyubiquitination. However, the E3 ligase responsible for these modifications was unknown. We show CIITA ubiquitination and transactivity are enhanced with the histone acetyltransferase (HAT), p300/CBP associated factor (pCAF), and the E3 ligase region within pCAF is necessary for both. Additionally, pCAF mediated ubiquitination is independent of pCAF's HAT domain, and acetylation deficient CIITA is K48 polyubiquitinated and degraded in the presence of pCAF. Lastly, we identify the histone acetyltransferase, pCAF, as the E3 ligase responsible for CIITA's ubiquitination.

II类反激活子(CIITA)对主要组织相容性II类(MHC II)基因的转录调控至关重要。CIITA作为MHC II转录的“主调控因子”,其调控势在必行,需要多种翻译后修饰(ptm)才能发挥作用。之前我们发现了CIITA的各种泛素化事件。单泛素化对于CIITA的交易性很重要,而K63连接的泛素化与ERK1/2磷酸化参与串扰,共同介导细胞从细胞质到核区的运动。此外,CIITA还被降解的K48多泛素化修饰。然而,负责这些修饰的E3连接酶是未知的。我们发现,组蛋白乙酰转移酶(HAT)、p300/CBP相关因子(pCAF)增强了CIITA的泛素化和交易活性,而pCAF内的E3连接酶区域对两者都是必需的。此外,pCAF介导的泛素化不依赖于pCAF的HAT结构域,乙酰化缺陷的CIITA在pCAF存在下被K48多泛素化和降解。最后,我们确定了组蛋白乙酰转移酶pCAF作为E3连接酶,负责CIITA的泛素化。
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引用次数: 4
期刊
International Journal of Cell Biology
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