Pub Date : 2014-08-20DOI: 10.2142/BIOPHYS.54.S166_4
M. Ichikawa, Kei Saito, Haruaki Yanagisawa, T. Yagi, R. Kamiya, Yasuharu Kushida, K. Nakano, O. Numata, Y. Toyoshima
{"title":"1P154 LC1 Binds to the Stalk of the Outer Arm Dynein(11. Molecular motor,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))","authors":"M. Ichikawa, Kei Saito, Haruaki Yanagisawa, T. Yagi, R. Kamiya, Yasuharu Kushida, K. Nakano, O. Numata, Y. Toyoshima","doi":"10.2142/BIOPHYS.54.S166_4","DOIUrl":"https://doi.org/10.2142/BIOPHYS.54.S166_4","url":null,"abstract":"","PeriodicalId":409321,"journal":{"name":"Seibutsu Butsuri","volume":"127 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"132374940","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2014-08-20DOI: 10.2142/BIOPHYS.54.S268_2
Taisaku Ogawa, K. Yogo, S. Furuike, K. Sutoh, A. Kikuchi, K. Kinosita
{"title":"3P116 Reverse gyrase likely biases thermal DNA strand passage toward overwinding(04. Nucleic acid binding proteins,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))","authors":"Taisaku Ogawa, K. Yogo, S. Furuike, K. Sutoh, A. Kikuchi, K. Kinosita","doi":"10.2142/BIOPHYS.54.S268_2","DOIUrl":"https://doi.org/10.2142/BIOPHYS.54.S268_2","url":null,"abstract":"","PeriodicalId":409321,"journal":{"name":"Seibutsu Butsuri","volume":"81 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131567992","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2014-08-20DOI: 10.2142/BIOPHYS.54.S159_2
N. Tsuchida, T. Takagi, T. Kikukawa, Hiroshi Takahashi, T. Kanamori, M. Sonoyama
{"title":"1P110 Effect of partial fluorination on bacteriorhodopsin reconstituted in dimerized Di-o-tetradecylphosphatidylcholine vesicle(03. Membrane proteins,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))","authors":"N. Tsuchida, T. Takagi, T. Kikukawa, Hiroshi Takahashi, T. Kanamori, M. Sonoyama","doi":"10.2142/BIOPHYS.54.S159_2","DOIUrl":"https://doi.org/10.2142/BIOPHYS.54.S159_2","url":null,"abstract":"","PeriodicalId":409321,"journal":{"name":"Seibutsu Butsuri","volume":"169 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"133509579","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2014-08-20DOI: 10.2142/BIOPHYS.54.S330_2
Hirofumi Suzuki
{"title":"Browsing searching, and Comparing 3D electron microscopy data(PDBJ: Protein Data Bank Japan,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))","authors":"Hirofumi Suzuki","doi":"10.2142/BIOPHYS.54.S330_2","DOIUrl":"https://doi.org/10.2142/BIOPHYS.54.S330_2","url":null,"abstract":"","PeriodicalId":409321,"journal":{"name":"Seibutsu Butsuri","volume":"43 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"114140630","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2014-08-20DOI: 10.2142/biophys.54.S265_2
M. Patti, Rieko Kamii, T. Ishizuka, H. Yawo
{"title":"3P098 Engineering of Channelrhodopsin with Specific Ion Selectivity(03. Membrane proteins,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))","authors":"M. Patti, Rieko Kamii, T. Ishizuka, H. Yawo","doi":"10.2142/biophys.54.S265_2","DOIUrl":"https://doi.org/10.2142/biophys.54.S265_2","url":null,"abstract":"","PeriodicalId":409321,"journal":{"name":"Seibutsu Butsuri","volume":"150 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"117308091","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2014-08-20DOI: 10.2142/BIOPHYS.54.S296_2
S. Ashwin, M. Sasai
{"title":"3P284 Epigenetic Dynamics of Cell Reprogramming(25. Nonequilibrium state & Biological rhythm,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))","authors":"S. Ashwin, M. Sasai","doi":"10.2142/BIOPHYS.54.S296_2","DOIUrl":"https://doi.org/10.2142/BIOPHYS.54.S296_2","url":null,"abstract":"","PeriodicalId":409321,"journal":{"name":"Seibutsu Butsuri","volume":"114 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"117352498","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2014-08-20DOI: 10.2142/BIOPHYS.54.S250_5
S. Ito, Y. Okamoto, S. Irle
{"title":"3P011 Implementation of Replica-Exchange Umbrella Sampling to the DFTB+ Simulation Package(01A. Protein: Structure,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))","authors":"S. Ito, Y. Okamoto, S. Irle","doi":"10.2142/BIOPHYS.54.S250_5","DOIUrl":"https://doi.org/10.2142/BIOPHYS.54.S250_5","url":null,"abstract":"","PeriodicalId":409321,"journal":{"name":"Seibutsu Butsuri","volume":"69 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"114990163","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2014-08-20DOI: 10.2142/BIOPHYS.54.S147_3
K. Sasahara
{"title":"1P039 Microscopic observation of amyloid deposits associated with lipids of amyloid β-peptide(01B. Protein : Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))","authors":"K. Sasahara","doi":"10.2142/BIOPHYS.54.S147_3","DOIUrl":"https://doi.org/10.2142/BIOPHYS.54.S147_3","url":null,"abstract":"","PeriodicalId":409321,"journal":{"name":"Seibutsu Butsuri","volume":"37 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115605222","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2014-08-20DOI: 10.2142/biophys.54.S256_1
Jing Cheng, Yuichi Hanada, H. Kondo, S. Tsuda
Antifreeze proteins (AFPs) facilitate cold-survival of the organisms living under freezing environment by inhibiting ice crystal growth. In this study, we focused on a fungal AFP denoted TisAFP secreted from a psychrophilic snow-mold fungus, Typhula ishikariensis. It reported seven isoforms of TisAFP that share a high sequence identity. Significantly, fluorescencebased ice plane affinity (FIPA) analysis showed that the ice binding specificity of TisAFP8 is quite different from the others. To clarify what determines the uniqueness of TisAFP8, we performed mutagenesis experiments on TisAFP8, especially on the residues constructing its putative ice-binding site. The data suggested an importance of inward pointing residues not just outward pointing residues of TisAFP8.
{"title":"3P043 Mutagenesis study of an antifreeze protein isoform from a snow-mold fungus, Typhula ishikariensis(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))","authors":"Jing Cheng, Yuichi Hanada, H. Kondo, S. Tsuda","doi":"10.2142/biophys.54.S256_1","DOIUrl":"https://doi.org/10.2142/biophys.54.S256_1","url":null,"abstract":"Antifreeze proteins (AFPs) facilitate cold-survival of the organisms living under freezing environment by inhibiting ice crystal growth. In this study, we focused on a fungal AFP denoted TisAFP secreted from a psychrophilic snow-mold fungus, Typhula ishikariensis. It reported seven isoforms of TisAFP that share a high sequence identity. Significantly, fluorescencebased ice plane affinity (FIPA) analysis showed that the ice binding specificity of TisAFP8 is quite different from the others. To clarify what determines the uniqueness of TisAFP8, we performed mutagenesis experiments on TisAFP8, especially on the residues constructing its putative ice-binding site. The data suggested an importance of inward pointing residues not just outward pointing residues of TisAFP8.","PeriodicalId":409321,"journal":{"name":"Seibutsu Butsuri","volume":"117 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115878526","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2014-08-20DOI: 10.2142/BIOPHYS.54.S261_6
I. Wijaya, T. Iwata, E. Getzoff, H. Kandori
{"title":"3P078 Role of FAD N5 proximal Asn residue in CPD-Photolyase(01D. Protein: Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))","authors":"I. Wijaya, T. Iwata, E. Getzoff, H. Kandori","doi":"10.2142/BIOPHYS.54.S261_6","DOIUrl":"https://doi.org/10.2142/BIOPHYS.54.S261_6","url":null,"abstract":"","PeriodicalId":409321,"journal":{"name":"Seibutsu Butsuri","volume":"27 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115439229","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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