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An efficient implementation of analytical nuclear gradients for linear-response time-dependent density functional theory in the plane wave basis 线性响应时变密度泛函理论在平面波基础上的解析核梯度的有效实现
IF 2.6 Q3 CHEMISTRY, PHYSICAL Pub Date : 2023-04-06 DOI: 10.1088/2516-1075/accb23
Jie Liu, Wei Hu, Jinlong Yang
We present an efficient implementation of the analytical nuclear gradient of linear-response time-dependent density functional theory (LR-TDDFT) with the frozen core approximation (FCA). This implementation is realized based on the Hutter’s formalism and the plane wave pseudopotential method. Numerical results demonstrate that the LR-TDDFT/FCA method using a small subset of Kohn–Sham occupied orbitals are accurate enough to reproduce the LR-TDDFT results. Here, the FCA remarkably reduces the computational cost in solving the LR-TDDFT eigenvalue equation. Another challenge in the calculations of analytical nuclear gradients for LR-TDDFT is the solution of the Z-vector equation, for which the Davidson algorithm is a popular choice. While, for large systems the standard Davidson algorithm exhibits a low convergence rate. In order to overcome this problem, we generalize the two-level Davidson algorithm to solve linear equation problems. A more stable performance is achieved with this new algorithm. Our method should encourage further studies of excited-state properties with LR-TDDFT in the plane wave basis.
我们提出了一种利用冻结核近似(FCA)有效实现线性响应时间相关密度泛函理论(LR-TDDFT)的解析核梯度的方法。该实现是基于Hutter形式和平面波赝势方法实现的。数值结果表明,使用Kohn–Sham占据轨道的子集的LR-TDDFT/FCA方法足够准确,可以重现LR-TDDFT结果。在这里,FCA显著降低了求解LR-TDDFT特征值方程的计算成本。LR-TDDFT分析核梯度计算中的另一个挑战是Z矢量方程的求解,Davidson算法是该方程的一个流行选择。而对于大型系统,标准Davidson算法表现出较低的收敛速度。为了克服这一问题,我们推广了求解线性方程问题的两级Davidson算法。这种新算法实现了更稳定的性能。我们的方法应该鼓励在平面波基上用LR-TDDFT进一步研究激发态性质。
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引用次数: 1
Multiple resonance induced thermally activated delayed fluorescence: effect of chemical modification 多重共振诱导热激活延迟荧光:化学修饰效应
IF 2.6 Q3 CHEMISTRY, PHYSICAL Pub Date : 2023-03-23 DOI: 10.1088/2516-1075/acc70e
Xiaopeng Wang, Siyu Gao, Aizhu Wang, Bo Wang, N. Marom
Thermally activated delayed fluorescence (TADF) is the internal conversion of triplet excitons into singlet excitons via reverse intersystem crossing (RISC). It improves the efficiency of organic light-emitting diodes (OLED) by enabling the harvesting of nonradiative triplet excitons. Multiple resonance (MR) induced TADF chromophores exhibit an additional advantage of high color purity due to their rigid conformation. However, owing to the strict design rules there is a limited number of known MR-TADF chromophores. For applications in full-color high-resolution OLED displays, it is desirable to extend the variety of available chromophores and their color range. We computationally explore the effect of chemical modification on the properties of the MR-TADF chromophore quinolino[3,2,1-de]acridine-5,9-dione (QAD). QAD derivatives are evaluated based on several metrics: The formation energy is associated with the ease of synthesis; The spatial distribution of the frontier orbitals indicates whether a compound remains an MR-TADF chromophore or turns into a donor–acceptor TADF chromophore; The change of the singlet excitation energy compared to the parent compound corresponds to the change in color; The energy difference between the lowest singlet and triplet states corresponds to the barrier to RISC; The reorganization energy is associated with the color purity. Based on these metrics, QAD-6CN is predicted to be a promising MR-TADF chromophore with a cyan hue. This demonstrates that computer simulations may aid the design of new MR-TADF chromophores by chemical modification.
热激活延迟荧光(TADF)是通过反向系统间交叉(RISC)将三重态激子内部转化为单线态激子。它通过能够捕获非辐射三重态激子来提高有机发光二极管(OLED)的效率。多重共振(MR)诱导的TADF发色团由于其刚性构象而表现出高颜色纯度的额外优势。然而,由于严格的设计规则,已知的MR-TADF发色团数量有限。对于全色高分辨率OLED显示器的应用,希望扩展可用发色团的种类及其颜色范围。我们通过计算探讨了化学修饰对MR-TADF发色团喹啉并[3,2,1-de]吖啶-5,9-二酮(QAD)性质的影响。基于以下几个指标来评估QAD导数:形成能量与合成的容易性有关;前沿轨道的空间分布表明化合物是保持MR-TADF发色团还是转变为供体-受体TADF发色基团;与母体化合物相比,单线态激发能的变化对应于颜色的变化;最低单重态和三重态之间的能量差对应于RISC的势垒;重组能量与颜色纯度有关。基于这些度量,QAD-6CN被预测为具有青色色调的有前途的MR-TADF发色团。这表明计算机模拟可以通过化学修饰来帮助设计新的MR-TADF发色团。
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引用次数: 1
AiiDA-defects: an automated and fully reproducible workflow for the complete characterization of defect chemistry in functional materials aiida缺陷:用于功能材料缺陷化学完整表征的自动化和完全可重复的工作流程
IF 2.6 Q3 CHEMISTRY, PHYSICAL Pub Date : 2023-03-22 DOI: 10.1088/2516-1075/ace014
S. Muy, Conrad Johnston, N. Marzari
Functional materials that enable many technological applications in our everyday lives owe their unique properties to defects that are carefully engineered and incorporated into these materials during processing. However, optimizing and characterizing these defects is very challenging in practice, making computational modelling an indispensable complementary tool. We have developed an automated workflow and code to accelerate these calculations (AiiDA-defects), which utilises the AiiDA framework, a robust open-source high-throughput materials informatics infrastructure that provides workflow automation while simultaneously preserving and storing the full data provenance in a relational database that is queryable and traversable. This paper describes the design and implementation details of AiiDA-defects, the models and algorithms used, and demonstrates its use in an application to fully characterize the defect chemistry of the well known solid-state Li-ion conductors LiZnPS4. We anticipate that AiiDA-defects will be useful as a tool for fully automated and reproducible defect calculations, allowing detailed defect chemistry to be obtained in a reliable and high-throughput way, and paving the way toward the generation of defects databases for accelerated materials design and discovery.
在我们日常生活中实现许多技术应用的功能材料,其独特的性能归功于在加工过程中精心设计并融入这些材料的缺陷。然而,优化和表征这些缺陷在实践中非常具有挑战性,使计算建模成为不可或缺的补充工具。我们开发了一个自动化的工作流程和代码来加速这些计算(AiiDA缺陷),它利用了AiiDA框架,这是一个强大的开源高通量材料信息学基础设施,提供了工作流程自动化,同时在可查询和可遍历的关系数据库中保留和存储完整的数据来源。本文描述了AiiDA缺陷的设计和实现细节、使用的模型和算法,并演示了它在充分表征众所周知的固态锂离子导体LiZnPS4的缺陷化学的应用中的用途。我们预计,AiiDA缺陷将作为一种完全自动化和可重复的缺陷计算工具,使详细的缺陷化学能够以可靠和高通量的方式获得,并为生成用于加速材料设计和发现的缺陷数据库铺平道路。
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引用次数: 2
Defects in WS2 monolayer calculated with a nonlocal functional: any difference from GGA? 用非局部泛函计算WS2单层缺陷:与GGA有何区别?
IF 2.6 Q3 CHEMISTRY, PHYSICAL Pub Date : 2023-03-17 DOI: 10.1088/2516-1075/acc55d
Daria Kieczka, T. Durrant, Katherine L Milton, K. Goh, M. Bosman, A. Shluger
Density functional theory (DFT) with generalised gradient approximation (GGA) functionals is commonly used to predict defect properties in 2D transition metal dichalcogenides (TMDs). Since GGA functionals often underestimate band gaps of semiconductors and incorrectly describe the character of electron localisation in defects and their level positions within the band gap, it is important to assess the accuracy of these predictions. To this end, we used the non-local density functional Perdew—Burke—Ernzerhof (PBE)0-TC-LRC to calculate the properties of a wide range of intrinsic defects in monolayer WS2. The properties, such as geometry, in-gap states, charge transition levels, electronic structure and the electron/hole localisation of the lowest formation energy defects are discussed in detail. They are broadly similar to those predicted by the GGA PBE functional, but exhibit numerous quantitative differences caused by the degree of electron and hole localisation in charged states. For some anti-site defects, more significant differences are seen, with both changes in defect geometries (differences of up to 0.5 Å) as well as defect level positions within the band gap of WS2. This work provides an insight into the performance of functionals chosen for future DFT calculations of TMDs with respect to the desired defect properties.
具有广义梯度近似(GGA)泛函的密度泛函理论(DFT)通常用于预测二维过渡金属二硫族化合物(TMDs)中的缺陷性质。由于GGA泛函经常低估半导体的带隙,并错误地描述了缺陷中电子局部化的特征及其在带隙内的能级位置,因此评估这些预测的准确性很重要。为此,我们使用非局部密度泛函Perdew-Burke-Ernzerhof(PBE)0-TC-LRC来计算单层WS2中各种本征缺陷的性质。详细讨论了最低形成能缺陷的性质,如几何结构、间隙态、电荷跃迁能级、电子结构和电子/空穴局部化。它们与GGA-PBE泛函预测的结果大致相似,但由于带电态中电子和空穴的局域化程度,表现出许多定量差异。对于一些反位点缺陷,可以看到更显著的差异,缺陷几何形状都发生了变化(差异高达0.5 Å)以及WS2的带隙内的缺陷能级位置。这项工作深入了解了为TMDs的未来DFT计算选择的泛函在所需缺陷特性方面的性能。
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引用次数: 1
Low-rank approximations to accelerate hybrid functional enabled real-time time-dependent density functional theory within plane waves 低阶近似加速平面波内混合泛函实时含时密度泛函理论
IF 2.6 Q3 CHEMISTRY, PHYSICAL Pub Date : 2023-03-15 DOI: 10.1088/2516-1075/acc4a0
Jielan Li, Lingyun Wan, Shizhe Jiao, Wei Hu, Jinlong Yang
Real-time time-dependent density functional theory (RT-TDDFT) is a powerful tool for predicting excited-state dynamics. Herein, we combine the adaptively compressed exchange (ACE) operator with interpolative separable density fitting (ISDF) algorithm to accelerate the hybrid functional calculations in RT-TDDFT (hybrid RT-TDDFT) dynamics simulations for molecular and periodic systems within plane waves. Under this low-rank representation, we demonstrate that the ACE-ISDF enabled hybrid RT-TDDFT can yield accurate excited-state dynamics, but much faster than conventional calculations. Furthermore, we describe a massively parallel implementation of ACE-ISDF enabled hybrid RT-TDDFT dynamics simulations containing thousands of atoms (1728 atoms), which can scale up to 3456 central processing unit cores on modern supercomputers.
实时时变密度泛函理论(RT-TDDFT)是预测激发态动力学的有力工具。本文将自适应压缩交换(ACE)算子与插值可分密度拟合(ISDF)算法相结合,加速了平面波内分子和周期系统RT-TDDFT动力学模拟中的混合泛函计算。在这种低秩表示下,我们证明了ACE-ISDF支持的混合RT-TDDFT可以产生精确的激发态动力学,但比传统计算快得多。此外,我们描述了ACE-ISDF支持的混合RT-TDDFT动力学模拟的大规模并行实现,该模拟包含数千个原子(1728个原子),可以在现代超级计算机上扩展到3456个中央处理单元核心。
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引用次数: 0
Strain effect on the high T c superconductor YBa2Cu3O7: an ab initio study comparing bulk and monolayer models 高温超导体YBa2Cu3O7的应变效应:体模型与单层模型的从头算比较
IF 2.6 Q3 CHEMISTRY, PHYSICAL Pub Date : 2023-02-28 DOI: 10.1088/2516-1075/acbff9
C. Yelpo, S. Favre, D. Ariosa, R. Faccio
In this work, the effect of strain on the vibrational and electronic properties of the YBa2Cu3O7 compound was studied through ab initio calculations. For this, two structural models were used: a bulk model and a surface model (a monolayer with CuO2 and BaO as the terminating layers). The phonon spectra was calculated for both structures under different levels of c axis strain. The most appreciable change occurs in the vibrational properties, and in the surface case. From the simulation of the Raman spectra, we were able to quantify the Raman shift ratio as a function of the applied strain, and analyzed its behavior in terms of the overlap population of the different bonds and the reduced mass of selected phonons. The effect of the level of deformation on the band structure and the electronic density of states is small for both structures, although more noticeable in the case of the surface model. In both cases, tendencies are observed when the fine features of the band structure are analyzed by means of the tight binding model. Due to the lower symmetry, the surface model also shows modifications of the bands related to the CuO2 planes.
本文通过从头计算研究了应变对YBa2Cu3O7化合物振动和电子性能的影响。为此,使用了两种结构模型:体模型和表面模型(以CuO2和BaO为终止层的单层)。计算了两种结构在不同c轴应变水平下的声子谱。最明显的变化发生在振动性质和表面情况。从拉曼光谱的模拟中,我们能够量化拉曼位移比作为施加应变的函数,并根据不同键的重叠人口和选定声子的减少质量来分析其行为。变形水平对能带结构和态电子密度的影响对两种结构都很小,尽管在表面模型的情况下更为明显。在这两种情况下,当用紧密结合模型分析带结构的精细特征时,都可以观察到趋势。由于较低的对称性,表面模型还显示了与CuO2平面相关的能带的修改。
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引用次数: 0
Anomalous delocalization of resonant states in graphene & the vacancy magnetic moment 石墨烯共振态的反常离域&空位磁矩
IF 2.6 Q3 CHEMISTRY, PHYSICAL Pub Date : 2023-02-23 DOI: 10.1088/2516-1075/acdbf4
M. Leccese, R. Martinazzo
Carbon atom vacancies in graphene give rise to a local magnetic moment of σ+π origin, whose magnitude is yet uncertain and debated. Partial quenching of π magnetism has been ubiquitously reported in periodic first principles calculations, with magnetic moments scattered in the range 1.0–2.0 µ B, slowly converging to the lower or the upper end, depending on how the diluted limit is approached. By contrast, (ensemble) density functional theory calculations on cluster models neatly converge to the value of 2 μB when increasing the system size. This stunning discrepancy has sparked a debate about the role of defect–defect interactions and self-doping, and about the importance of the self-interaction-error in the density-functional-theory description of the vacancy-induced states. Here, we settle this puzzle by showing that the problem has a fundamental, mono-electronic origin which is related to the special (periodic) arrangement of defects that results when using the slab-supercell approach. Specifically, we report the existence of resonant states that are anomalously delocalized over the lattice and that make the π midgap band unphysically dispersive, hence prone to self-doping and quenching of the π magnetism. Hybrid functionals fix the problem by widening the gap between the spin-resolved π midgap bands, without reducing their artificial widths. As a consequence, while reconciling the magnetic moment with expectations, they predict a spin-splitting which is one order of magnitude larger than found in experiments.
石墨烯中的碳原子空位会产生σ+π起源的局部磁矩,其大小尚不确定,也存在争议。在周期第一性原理计算中,π磁性的部分猝灭已被普遍报道,磁矩分散在1.0–2.0µB的范围内,慢慢收敛到下端或上端,这取决于如何接近稀释极限。相比之下,聚类模型上的(系综)密度泛函理论计算巧妙地收敛到2的值 μB。这种惊人的差异引发了关于缺陷-缺陷相互作用和自掺杂的作用,以及自相互作用误差在空位诱导态的密度泛函理论描述中的重要性的辩论。在这里,我们通过证明这个问题有一个基本的单电子起源来解决这个难题,这与使用平板超晶胞方法时产生的缺陷的特殊(周期性)排列有关。具体地说,我们报道了共振态的存在,这些共振态在晶格上异常离域,使π中隙带不具有物理色散性,因此易于自掺杂和π磁性的猝灭。混合泛函通过扩大自旋分辨的π中隙带之间的间隙来解决这个问题,而不减少它们的人工宽度。因此,在调和磁矩与预期的同时,他们预测了比实验中发现的大一个数量级的自旋分裂。
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引用次数: 0
Decomposing Hofmeister effects on amino acid residues with symmetry adapted perturbation theory 用对称适配微扰理论分解氨基酸残基上的Hofmeister效应
IF 2.6 Q3 CHEMISTRY, PHYSICAL Pub Date : 2023-02-23 DOI: 10.1088/2516-1075/acbe84
Kasimir P. Gregory, G. Webber, E. Wanless, A. Page
Hofmeister effects, and more generally specific ion effects, are observed broadly in biological systems. However, there are many cases where the Hofmeister series might not be followed in complex biological systems, such as ion channels which can be highly specific to a particular ion. An understanding of how ions from the Hofmeister series interact with the proteinogenic amino acids will assist elucidation of why some binding interactions may be favoured over others. Using symmetry adapted perturbation theory (SAPT2 + 3), the interaction energies between a selection of anions and each amino acid have been investigated. The interaction strengths become more favourable in accordance with the Hofmeister series, and also with increasing polarity of the amino acids (with the exception of the negatively charged amino acid side chains). Furthermore, the interactions are generally most favourable when they simultaneously involve the side chain and both protic moieties of the backbone. The total interaction energy in these anion–amino acid complexes is also primarily determined by its electrostatic component, in a manner proportional to the þ (‘sho’) value of the anion.
霍夫梅斯特效应,以及更普遍的特定离子效应,在生物系统中被广泛观察到。然而,在许多情况下,在复杂的生物系统中,例如对特定离子具有高度特异性的离子通道,可能不会遵循Hofmeister系列。了解Hofmeister系列离子如何与蛋白质生成氨基酸相互作用,将有助于阐明为什么某些结合相互作用可能比其他结合相互作用更受青睐。利用对称适配微扰理论(SAPT2+3),研究了一系列阴离子与每种氨基酸之间的相互作用能。根据Hofmeister系列,以及随着氨基酸极性的增加(带负电荷的氨基酸侧链除外),相互作用强度变得更有利。此外,当它们同时涉及主链的侧链和两个质子部分时,相互作用通常是最有利的。这些阴离子-氨基酸复合物中的总相互作用能也主要由其静电成分决定,其方式与阴离子的þ(“o”)值成比例。
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引用次数: 3
From defect to effect: controlling electronic transport in chevron graphene nanoribbons 从缺陷到效果:控制石墨烯纳米带中的电子输运
IF 2.6 Q3 CHEMISTRY, PHYSICAL Pub Date : 2023-02-21 DOI: 10.1088/2516-1075/acbdd9
Kristiāns Čerņevičs, O. Yazyev
While bottom-up synthesis allows for precise control over the properties of graphene nanoribbons (GNRs), the use of certain precursor molecules can result in edge defects, such as missing benzene rings that resemble a ‘bite’. We investigate the adverse effect of the ‘bite’ defects on the electronic transport properties in three chevron-type GNRs and discover that the extent of scattering is governed by the different defect positions. Applying the concepts learned in single GNRs, we engineer defects in two nanostructures to construct prototypical components for nanoelectronics. First, we design a switch, consisting of three laterally fused fluorenyl-chevron GNRs, and place a pair of ‘bite’ defects to effectively allow the switching between four binary states corresponding to distinct current pathways. Second, we show that conscientious placement of a ‘bite’ defect pair can increase conductance between two leads in a triple chevron GNR junction. Overall, we outline how the incorporation of ‘bite’ defects affects transport properties in chevron-type nanostructures and provide a guide on how to design nanoelectronic components.
虽然自下而上的合成可以精确控制石墨烯纳米带(GNRs)的性能,但使用某些前体分子可能会导致边缘缺陷,例如类似“咬”的苯环缺失。我们研究了“咬合”缺陷对三种V型GNR中电子输运性质的不利影响,并发现散射的程度由不同的缺陷位置决定。应用在单个GNR中学到的概念,我们在两个纳米结构中设计缺陷,以构建纳米电子的原型组件。首先,我们设计了一个开关,由三个横向融合的芴人字形GNR组成,并放置一对“咬合”缺陷,以有效地允许在对应于不同电流路径的四个二元状态之间切换。其次,我们证明了在三人字形GNR结中,认真放置“咬合”缺陷对可以增加两个引线之间的电导。总之,我们概述了“咬合”缺陷的引入如何影响人字形纳米结构的传输特性,并为如何设计纳米电子元件提供了指导。
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引用次数: 0
Covalency modulation enables stable Na-rich layered oxide cathodes for Na-ion batteries 共价调制使钠离子电池的富钠层状氧化物阴极稳定
IF 2.6 Q3 CHEMISTRY, PHYSICAL Pub Date : 2023-02-08 DOI: 10.1088/2516-1075/acba6e
Xi Zhou, Manling Ding, Chen Cheng, Xiao-Hui Xia, Haolv Hu, Yihao Shen, S. Fedotov, Liang Zhang
As the analogs of Li-rich materials, Na-rich transition metal layered oxides are promising cathode materials for Na-ion batteries owing to their high theoretical capacity and energy density through cumulative cationic and anionic redox. However, most of the reported Na-rich cathode materials are mainly Ru- and Ir-based layered oxides, which limits the practical application. Herein, we report a Na-rich and Ru-doped O3-type Na1.1Ni0.35Mn0.55O2 cathode to mitigate this issue. By partially substituting Mn4+ with high-electronegativity Ru4+, the structural stability and electrochemical performance of the cathode are both greatly improved. It is validated that the high covalency of Ru–O bonds could harden the structural integrity with rigid oxygen framework upon cycling, leading to enhanced O3-P3 phase transition reversibility. Ru doping also induces an enlarged interlayer spacing to boost the Na+ diffusion kinetics for improved rate capability. In addition, benefiting from the large energetic overlap between Ru 4d and O 2p states, the reinforced Ru–O covalency enables highly reversible Ru4+/Ru5+ redox accompanied with more stable oxygen redox, leading to improved specific capacity and stability over cycling. Our present study provides a promising strategy for designing high-performance Na-rich layered oxide cathode materials through covalency modulation toward practical applications.
富钠过渡金属层状氧化物作为富锂材料的类似物,通过累积的正离子和阴离子氧化还原,具有较高的理论容量和能量密度,是钠离子电池极有前景的正极材料。然而,目前报道的富钠正极材料多以钌基和铁基层状氧化物为主,限制了其实际应用。本文报道了一种富na和掺ru的o3型Na1.1Ni0.35Mn0.55O2阴极来缓解这一问题。用高电负性的Ru4+部分取代Mn4+,大大提高了阴极的结构稳定性和电化学性能。验证了Ru-O键的高共价可以在循环过程中硬化具有刚性氧框架的结构完整性,从而增强O3-P3相变的可逆性。Ru的掺杂也导致了层间距的增大,从而提高了Na+的扩散动力学,从而提高了速率能力。此外,得益于ru4d和o2p态之间的大能量重叠,增强的Ru - O共价使得Ru4+/Ru5+具有高可逆性的氧化还原,同时伴随着更稳定的氧氧化还原,从而提高了比容量和循环稳定性。本研究为通过共价调制设计高性能富钠层状氧化物正极材料提供了一种具有实际应用前景的方法。
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引用次数: 1
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Electronic Structure
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