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2010 Biomedical Circuits and Systems Conference (BioCAS)最新文献

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A stream-based Hebbian eigenfilter for real-time neurophysiological signal processing 用于实时神经生理信号处理的基于流的Hebbian特征滤波器
Pub Date : 2010-11-01 DOI: 10.1109/BIOCAS.2010.5709578
Bo Yu, T. Mak, Xiangyu Li, Fei Xia, A. Yakovlev, Yihe Sun, C. Poon
Rapid advances in multi-channel microelectrode neural recording technologies in recent years have spawned broad applications in implantable neuroprosthetic and rehabilitation systems. The dramatic increases in data bandwidth and data volume associated with multichannel recording also come with a large computational load which presents major design challenges for implantable systems in terms of power dissipation and hardware area. In this paper, we present a new design methodology that utilizes Hebbian learning for real-time neural signal processing. A stream-based technique is proposed that can effectively approximate the hardware learning kernel while significantly reducing hardware area and power. The proposed method is validated using benchmark problems including spike sorting and population decoding. Experimental results show that the stream-based approach can achieve up to 98% and 43.4% reduction in equivalent slice look-up table and power of Xilinx Spartan6 Low Power FPGA.
近年来,多通道微电极神经记录技术的快速发展,在植入式神经修复和康复系统中产生了广泛的应用。与多通道记录相关的数据带宽和数据量的急剧增加也带来了大量的计算负载,这在功耗和硬件面积方面为可植入系统提出了主要的设计挑战。在本文中,我们提出了一种新的设计方法,利用Hebbian学习进行实时神经信号处理。提出了一种基于流的技术,可以有效地逼近硬件学习核,同时显著减少硬件面积和功耗。采用峰值排序和总体解码等基准问题对该方法进行了验证。实验结果表明,基于流的方法可使Xilinx Spartan6低功耗FPGA的等效切片查找表和功耗分别降低98%和43.4%。
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引用次数: 0
A bulk-driven ISFET-based chemical mixer 基于isfet的散装驱动化学混合器
Pub Date : 2010-11-01 DOI: 10.1109/BIOCAS.2010.5709589
W. S. W. Zain, T. Prodromakis, C. Toumazou
In this work the concept of the chemical mixer for comparing the pH of two aqueous solutions is introduced. Ionic concentrations are sensed via a pair of ISFETs, which are then translated into signals with frequencies that correspond to the pH values of the solutions. Using the bulk-driven single balanced topology, the number of transistors is significantly reduced, making it suitable for applications where a low supply voltage and low power consumption are essential. Finally, it is demonstrated that the output frequency of the mixer depends on the ΔpH of the solutions under test.
本文介绍了用于比较两种水溶液pH值的化学混合器的概念。离子浓度通过一对isfet感应,然后转换成频率与溶液pH值相对应的信号。采用体积驱动的单平衡拓扑结构,晶体管数量显著减少,使其适用于低电源电压和低功耗的应用。最后,证明了混合器的输出频率取决于被测溶液的ΔpH。
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引用次数: 1
The WiNAM project: Neural data analysis with applications to epilespy WiNAM项目:神经数据分析与癫痫的应用
Pub Date : 2010-11-01 DOI: 10.1109/BIOCAS.2010.5709567
W. Juffali, Jamil El-Imad, A. Eftekhar, C. Toumazou
This work presents a novel algorithmic method based on an ngram approach and applies it ECoG and deep brain neural data for analysis of epileptic seizures. This is part of a project (WiNAM) to design an analysis framework suitable for analysing brain dynamical changes. By first exploring the ngram model and its traditional use we describe how to apply it to biological data for pattern recognition. We then use this methodology and apply it to neurological data to show good sensitivity to seizure onset. Through these tests we explore the parameters used when computing the ngram to evaluate what is needed to maintain this sensitivity. Additionally, we present the analysis framework (an online system) that is being developed to carry out the ngram analysis and database the data and results.
本文提出了一种基于脑图方法的新算法,并将其应用于脑电图和脑深部神经数据分析癫痫发作。这是一个项目(WiNAM)的一部分,旨在设计一个适合分析大脑动态变化的分析框架。本文首先探讨了ngram模型及其传统用法,描述了如何将其应用于生物数据的模式识别。然后,我们使用这种方法并将其应用于神经学数据,以显示对癫痫发作的良好敏感性。通过这些测试,我们探索了计算ngram时使用的参数,以评估维持这种灵敏度所需的参数。此外,我们还介绍了正在开发的分析框架(一个在线系统),用于执行ngram分析并将数据和结果建立数据库。
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引用次数: 3
An electrochemical array sensor with CMOS signal processing circuits integrated on a single chip 一种将CMOS信号处理电路集成在单片机上的电化学阵列传感器
Pub Date : 2010-11-01 DOI: 10.1109/BIOCAS.2010.5709590
T. Yamazaki, T. Ikeda, M. Futagawa, F. Dasai, M. Ishida, K. Sawada
We have designed and fabricated a 2×4 electrochemical image sensor with CMOS signal processing circuits integrated on a single chip. Using a well-studied ferricyanide solution, a clear cyclic voltammetry curve was obtained from each working electrode of the array sensor. The external components used include a data generator and a data recorder. This sensor chip is an early prototype of a fully integrated system of a fast-scan electrochemical image sensor that uses microelectrodes.
我们设计并制作了一种将CMOS信号处理电路集成在单芯片上的2×4电化学图像传感器。使用经过充分研究的铁氰化溶液,阵列传感器的每个工作电极都获得了清晰的循环伏安曲线。所使用的外部组件包括数据发生器和数据记录器。该传感器芯片是使用微电极的快速扫描电化学图像传感器的完全集成系统的早期原型。
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引用次数: 2
Extracellular recording system based on amplitude modulation for CMOS microelectrode arrays 基于CMOS微电极阵列调幅的胞外记录系统
Pub Date : 2010-11-01 DOI: 10.1109/BIOCAS.2010.5709581
N. Joye, A. Schmid, Y. Leblebici
An innovative readout channel, based on analog amplitude modulation of the signals recorded by each sensing site, is developed for high-density CMOS-based microelectrode arrays. A single amplification stage simultaneously records the neural activity acquired from several sensors. A theoretical analysis has demonstrated that a major physical limitation of the readout architecture relates to the summation of the thermal noise of each recorded signal at the input node of the front-end amplification stage. After implementation of the proposed readout architecture in a UMC 0.18 μm CMOS technology, it has been shown that the maximum number of sensors which can simultaneously be recorded depends on the electrical characteristics of the recorded extracellular voltages, which depend on the experimental setup. Considering a typical case encountered during electrophysiological experiments, the maximum number of sensors which can simultaneously be recorded is approximately in the range of 5–10.
基于每个传感点记录的模拟调幅信号,开发了一种基于高密度cmos的微电极阵列的创新读出通道。单个放大级同时记录从多个传感器获取的神经活动。理论分析表明,读出架构的主要物理限制与前端放大级输入节点处每个记录信号的热噪声之和有关。在UMC 0.18 μm CMOS技术上实现了所提出的读出架构后,结果表明,可以同时记录的最大传感器数量取决于所记录的细胞外电压的电特性,而细胞外电压取决于实验设置。考虑到在电生理实验中遇到的一个典型案例,可以同时记录的传感器的最大数量大约在5-10个之间。
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引用次数: 2
Complete microsystem using SOI photodiode for DNA concentration measurement 完整的微系统使用SOI光电二极管DNA浓度测量
Pub Date : 2010-11-01 DOI: 10.1109/BIOCAS.2010.5709591
O. Bulteel, N. Van Overstraeten-Schlogel, P. Dupuis, D. Flandre
In this paper, we describe a complete microsystem allowing the measurement of DNA concentration based on ultraviolet (UV) absorption. The system includes an ultraviolet light-emitting diode (LED) as light source and a silicon-on-insulator (SOI) lateral PIN diode as photodetector. After demonstrating the feasibility of the system with a quartz container, measurements are performed on DNA samples in PCR tubes by direct trans-mittance. The measurement of the sample in the tubes implies no waste neither manipulation of the samples. We study the impact of variation of the different parameters of the system, i.e. the wavelength of the LED, the light power reaching the samples and the bias of the photosensor. We are able to measure responses for DNA concentrations in the range from 400 ng/μL to 4 pg/μL and correlate bacteria concentrations to the induced photocurrent of the diode from 6.1011 spores/mL to 6.107 spores/mL. The system features a present precision of current measurements of 2%. In the optimal case, a limit of detection (LOD) of 0.02 ng/μL has been estimated.
在本文中,我们描述了一个完整的微系统,允许基于紫外线(UV)吸收测量DNA浓度。该系统包括一个紫外发光二极管(LED)作为光源和一个绝缘体上硅(SOI)侧向PIN二极管作为光电探测器。在用石英容器演示了该系统的可行性后,通过直接透射法对PCR管中的DNA样品进行了测量。在试管中测量样品意味着没有浪费,也不需要对样品进行操作。我们研究了不同系统参数的变化,即LED的波长、到达样品的光功率和光敏器的偏置对系统的影响。我们能够测量DNA浓度在400 ng/μL到4 pg/μL范围内的响应,并将细菌浓度与二极管的诱导光电流在6.1011孢子/mL到6.107孢子/mL之间联系起来。该系统的特点是当前测量精度为2%。在最佳情况下,估计的检出限为0.02 ng/μL。
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引用次数: 4
Small-signal neural models and its application to determining model parameters 小信号神经模型及其在模型参数确定中的应用
Pub Date : 2010-11-01 DOI: 10.1109/BIOCAS.2010.5709599
A. Basu, P. Hasler
This paper introduces the use of the concept of small signal analysis, commonly used in circuit design, for understanding neural models. We show that neural models, varying in complexity from Hodgkin-Huxley to Integrate and fire have similar small signal models when their corresponding differential equations are close to the same bifurcation with respect to input current. The small signal model allows circuit designers to intuitively understand the behavior of complicated differential equations in a simple way. We use small-signal models for deriving parameters for a simple neural model (like resonate and fire) from a more complicated but biophysically relevant one like Morris-Lecar. We show similarity in the sub threshold behavior of the simple and complicated model when they are close to a Hopf bifurcation and a Saddle-node bifurcation. Hence, this is useful to correctly tune simple neural models for large scale cortical simulations.
本文介绍了利用电路设计中常用的小信号分析的概念来理解神经模型。我们表明,从霍奇金-赫胥黎到积分和火的复杂程度不同的神经模型,当它们对应的微分方程相对于输入电流接近相同的分岔时,具有相似的小信号模型。小信号模型使电路设计人员能够以简单的方式直观地理解复杂微分方程的行为。我们使用小信号模型从一个更复杂但与生物物理相关的模型(如Morris-Lecar)中为一个简单的神经模型(如共振和火)导出参数。在Hopf分岔和鞍节点分岔附近,简单模型和复杂模型的亚阈值行为具有相似性。因此,这对于正确调整简单的神经模型以进行大规模皮层模拟是有用的。
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引用次数: 1
A spike based 3D imager chip using a mixed mode encoding readout 使用混合模式编码读出的基于尖峰的3D成像芯片
Pub Date : 2010-11-01 DOI: 10.1109/BIOCAS.2010.5709603
Andre Harrison, R. Ozgun, Joseph H. Lin, A. Andreou, R. Etienne-Cummings
Spike based imagers commonly use either time-to-first spike (TTFS) or spike rate encoding exclusively. In this paper we discuss the benefits of using a mixed-mode encoding scheme backed by theoretical analysis and SPICE simulations. The mixed-mode readout uses both TTFS and spike rate information to estimate the illumination for each pixel, which lessens the maximum spike rate and timing clock speeds required for a given level of accuracy. We intend to test this methodology on a generic spike based imager chip we have designed and submitted for fabrication in a 0.13μm 3D SOI CMOS process. The imager is capable of both TTFS and spike rate encoding and should allow us to fully validate our theory.
基于尖峰的成像仪通常只使用第一个尖峰时间(TTFS)或尖峰率编码。在本文中,我们讨论了使用混合模式编码方案的好处,支持理论分析和SPICE模拟。混合模式读出使用TTFS和尖峰率信息来估计每个像素的照明,这降低了给定精度级别所需的最大尖峰率和定时时钟速度。我们打算在我们设计并提交的用于0.13μm 3D SOI CMOS工艺制造的通用脉冲成像芯片上测试该方法。成像仪能够TTFS和峰值速率编码,应该允许我们完全验证我们的理论。
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引用次数: 4
Design of limiting/logarithmic amplifier for wideband bioimpedance measuring devices 宽带生物阻抗测量装置的限幅/对数放大器设计
Pub Date : 2010-11-01 DOI: 10.1109/BIOCAS.2010.5709628
J. Ramos, J. L. Ausín, J. F. Duque-Carrillo, G. Torelli
In this paper, a limiting/logarithmic amplifier (LLA) for high dynamic range wideband bioelectrical impedance measurements is presented. The amplifier is composed of eight cascaded gain stages with a folded diode-connected transistor as a load that attain wide bandwidth performance with limited power consumption. The logarithmic conversion of the input variable is carried out with the aid of nine detectors. A prototype in standard 0.35-μm CMOS technology occupies 0.06 mm2 of silicon area and dissipates 2.2 mW from a single 2-V supply. Post-layout results show that the LLA is capable of processing a 65-dB input dynamic range over a frequency interval from 1 kHz to 1 MHz with an accuracy within ± 0.7 dB.
提出了一种用于高动态范围宽带生物电阻抗测量的极限/对数放大器(LLA)。该放大器由8级联增益级和一个折叠二极管连接晶体管作为负载组成,以有限的功耗获得宽带性能。输入变量的对数转换是在九个检测器的帮助下进行的。采用标准0.35 μm CMOS技术的原型占地0.06 mm2的硅面积,单个2v电源功耗为2.2 mW。后置结果表明,LLA能够在1 kHz至1 MHz的频率范围内处理65 dB的输入动态范围,精度在±0.7 dB以内。
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引用次数: 10
A conformable microelectrode array (cMEA) with integrated electronics for peripheral nerve interfacing 一种集成电子器件的适形微电极阵列(cMEA)用于周围神经接口
Pub Date : 2010-11-01 DOI: 10.1109/BIOCAS.2010.5709604
Liang Guo, I. Clements, Dustin Li, R. Bellamkonda, S. DeWeerth
A high-resolution PDMS-based conformable microelectrode array (cMEA) with integrated electronics is implemented. The cMEA is incorporated into individual layers of a nanofiber-based nerve regeneration scaffold to create a novel regenerative electrode scaffold (RES) capable of establishing a stable, high-resolution peripheral nerve interface. The device features a compact size with an enhanced signal-to-noise ratio (SNR), as required by implantation applications. Preliminary characterizations of the device are performed using in vitro experimentations, including impedance spectroscopy and neural culturing.
实现了一种高分辨率的基于pdm的集成电子集成微电极阵列(cMEA)。cMEA被整合到基于纳米纤维的神经再生支架的各个层中,以创建一种能够建立稳定,高分辨率周围神经界面的新型再生电极支架(RES)。该器件的特点是尺寸紧凑,可提高植入应用所需的信噪比(SNR)。该装置的初步表征是通过体外实验进行的,包括阻抗谱和神经培养。
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引用次数: 9
期刊
2010 Biomedical Circuits and Systems Conference (BioCAS)
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