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2019 IEEE 13th International Conference on Nano/Molecular Medicine & Engineering (NANOMED)最新文献

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Kimdaejung Convention Center 金大田会议中心
Pub Date : 2019-11-01 DOI: 10.1109/nanomed49242.2019.9130603
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引用次数: 0
Image Segmentation of Zona-Ablated Human Blastocysts 带状消融人囊胚的图像分割
Pub Date : 2019-11-01 DOI: 10.1109/NANOMED49242.2019.9130621
Md Yousuf Harun, M. A. Rahman, Joshua Mellinger, Willy Chang, Thomas T F Huang, B. Walker, Kristen Hori, A. Ohta
Automating human preimplantation embryo grading offers the potential for higher success rates with in vitro fertilization (IVF) by providing new quantitative and objective measures of embryo quality. Current IVF procedures typically use only qualitative manual grading, which is limited in the identification of genetically abnormal embryos. The automatic quantitative assessment of blastocyst expansion can potentially improve sustained pregnancy rates and reduce health risks from abnormal pregnancies through a more accurate identification of genetic abnormality. The expansion rate of a blastocyst is an important morphological feature to determine the quality of a developing embryo. In this work, a deep learning based human blastocyst image segmentation method is presented, with the goal of facilitating the challenging task of segmenting irregularly shaped blastocysts. The type of blastocysts evaluated here has undergone laser ablation of the zona pellucida, which is required prior to trophectoderm biopsy. This complicates the manual measurements of the expanded blastocyst's size, which shows a correlation with genetic abnormalities. The experimental results on the test set demonstrate segmentation greatly improves the accuracy of expansion measurements, resulting in up to 99.4% accuracy, 98.1% precision, 98.8% recall, a 98.4% Dice Coefficient, and a 96.9% Jaccard Index.
人类着床前胚胎自动分级为体外受精(IVF)提供了新的定量和客观的胚胎质量测量方法,从而提高了成功率。目前的体外受精程序通常只使用定性的人工分级,这在基因异常胚胎的识别方面受到限制。通过更准确地识别基因异常,囊胚膨胀的自动定量评估有可能提高持续妊娠率,降低异常妊娠带来的健康风险。囊胚的膨胀率是决定胚胎发育质量的重要形态学特征。在这项工作中,提出了一种基于深度学习的人类囊胚图像分割方法,旨在促进不规则形状囊胚分割的挑战性任务。这里所评估的囊胚类型已经进行了透明带的激光消融,这是在滋养外胚层活检之前所需要的。这使得人工测量扩大囊胚的大小变得复杂,这显示了与遗传异常的相关性。在测试集上的实验结果表明,分割极大地提高了扩展测量的准确率,准确率达到99.4%,精密度达到98.1%,召回率达到98.8%,Dice系数达到98.4%,Jaccard指数达到96.9%。
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引用次数: 3
System Model for Tracking In Vivo Nanoswimmers Using Kalman Filter for Nanobiomedicine 基于卡尔曼滤波的纳米生物医学体内纳米游泳者跟踪系统模型
Pub Date : 2019-11-01 DOI: 10.1109/NANOMED49242.2019.9130610
Zheng Gong, Yifan Chen, Shaolong Shi, Xiaoyou Lin, M. Cree, Neda Sharifi
We propose a new framework of tracking nanoswimmers for cancer detection and targeted drug delivery in microscale scenarios. The framework includes a novel multimodal complex vascular topological model to emulate the real vasculature inside the human body, and an efficient system model that is able to track nanoswimmers in an in vivo environment. The multimodal vascular model consists of three consecutive subnetworks to represent normal arteries, normal subcutaneous capillaries and tumor vasculature, aiming for setting up the trajectories towards tumors. The proposed tracking system model, based on Kalman filters, very significantly decreases the noise induced by a variety of sources by approximately 51.3%-75% to provide accurate position information of the nanoswimmers.
我们提出了一个新的框架来跟踪纳米游泳分子,用于癌症检测和微尺度下的靶向药物递送。该框架包括一个新的多模态复杂血管拓扑模型来模拟人体内的真实血管系统,以及一个能够在体内环境中跟踪纳米游泳者的有效系统模型。多模态血管模型由三个连续的子网络组成,分别代表正常动脉、正常皮下毛细血管和肿瘤血管,旨在建立肿瘤的运动轨迹。所提出的基于卡尔曼滤波的跟踪系统模型能够将各种噪声源引起的噪声显著降低约51.3% ~ 75%,从而提供准确的纳米游泳者位置信息。
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引用次数: 3
Timing The Therapeutic Trigger of Au Lipos Cur NPs for Effective Photothermal Therapy 为有效光热治疗而触发金脂流NPs的时间
Pub Date : 2019-11-01 DOI: 10.1109/NANOMED49242.2019.9130624
S. B. Alvi, S. Paradkar, Arpan Pradhan, R. Srivastava, A. Rengan
Photothermal therapy (PTT) is one of the emerging modalities for the treatment of cancer. Among various near Infrared (NIR) responsive nanomaterials which are under research, gold coated liposomes (Au Lipos NPs) are considered as a promising candidate for photothermal therapy and triggered drug delivery agent. The external NIR light trigger is advantageous because the trigger itself causes therapeutic effect (by inducing localized hyperthermia). In the current study we have investigated the timing of therapeutic trigger that governs the therapeutic efficacy. We found a significant enhancement in therapy when early trigger was applied. Moreover, the curcumin (hydrophobic model drug) entrapped in Au Lipos Cur NPs acted as a thermal sensitizer further enhancing the therapeutic outcome. The in vivo repeated dose administration in rats revealed no specific toxicity to the animal.
光热疗法(PTT)是一种新兴的癌症治疗方法。在各种正在研究的近红外响应纳米材料中,金包覆脂质体(Au Lipos NPs)被认为是光热治疗和触发药物递送剂的有前途的候选材料。外部近红外光触发是有利的,因为触发本身引起治疗效果(通过诱导局部热疗)。在目前的研究中,我们研究了控制治疗效果的治疗触发时间。我们发现早期触发的治疗效果显著增强。此外,包裹在Au lippos Cur NPs中的姜黄素(疏水模型药物)作为热敏剂进一步提高了治疗效果。大鼠体内重复给药对动物无特异性毒性。
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引用次数: 2
Inner Cell Mass and Trophectoderm Segmentation in Human Blastocyst Images using Deep Neural Network 基于深度神经网络的人胚泡图像内细胞团和滋养外胚层分割
Pub Date : 2019-11-01 DOI: 10.1109/NANOMED49242.2019.9130618
Md Yousuf Harun, Thomas T F Huang, A. Ohta
Embryo quality assessment based on morphological attributes is important for achieving higher pregnancy rates from in vitro fertilization (IVF). The accurate segmentation of the embryo's inner cell mass (ICM) and trophectoderm epithelium (TE) is important, as these parameters can help to predict the embryo viability and live birth potential. However, segmentation of the ICM and TE is difficult due to variations in their shape and similarities in their textures, both with each other and with their surroundings. To tackle this problem, a deep neural network (DNN) based segmentation approach was implemented. The DNN can identify the ICM region with 99.1% accuracy, 94.9% precision, 93.8% recall, a 94.3% Dice Coefficient, and a 89.3% Jaccard Index. It can extract the TE region with 98.3% accuracy, 91.8% precision, 93.2% recall, a 92.5% Dice Coefficient, and a 85.3% Jaccard Index.
基于形态属性的胚胎质量评估对于体外受精(IVF)获得更高的妊娠率非常重要。胚胎内细胞团(ICM)和滋养外胚层上皮(TE)的准确分割非常重要,因为这些参数有助于预测胚胎的生存能力和活产潜力。然而,ICM和TE的分割是困难的,因为它们的形状不同,纹理相似,彼此之间以及与周围环境。为了解决这一问题,实现了一种基于深度神经网络(DNN)的分割方法。DNN识别ICM区域的准确率为99.1%,精密度为94.9%,召回率为93.8%,Dice系数为94.3%,Jaccard指数为89.3%。该算法提取TE区域的准确率为98.3%,精密度为91.8%,召回率为93.2%,Dice系数为92.5%,Jaccard指数为85.3%。
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引用次数: 3
Development of a Microfluidic Chip for 3D Cancer Cell Migration Assay 三维癌细胞迁移微流控芯片的研制
Pub Date : 2019-11-01 DOI: 10.1109/NANOMED49242.2019.9130604
Chun-Chih Yeh, Andrew Goh, K. Lei
Metastasis is a serious disease caused by primary tumor cell dissemination to different organs. Although, invasion of primary tumor cell is the initial step required in tumor metastasis, migration is also the important key elements activity in cancer cell detach from the primary tumor and spreading to other extracellular matrix. Currently, various cell migration assays have been developed to investigate the motility behavior of the multicellular, including wound healing / scratch assay and transwell assay. However, most of the in vitro researches of cell motility are based on two-dimensional (2D) culture systems, which limit our understanding of the mechanisms of cell motility. Thus, three dimensional culture (3D) model is necessary which is able to mimic conditions and microenvironments of in vivo. In this study, a microfluidic chip was developed and matrigel was used as cell scaffold. In order to perform 3D cell migration assay, cells cultured in 3D environment and invaded through a matrigel filled microchannel. In addition, we determine the motility of the cancer cell correlated to the interleukin 6 (IL-6) concentration. Here, we successfully developed a prototype of visualizing and quantifying 3D cell migration assay.
转移是原发肿瘤细胞向不同脏器扩散而引起的严重疾病。虽然侵袭原发肿瘤细胞是肿瘤转移的第一步,但迁移也是癌细胞脱离原发肿瘤并向其他细胞外基质扩散的重要关键因素。目前,已经开发了各种细胞迁移试验来研究多细胞的运动行为,包括伤口愈合/划痕试验和transwell试验。然而,大多数细胞运动的体外研究都是基于二维(2D)培养系统,这限制了我们对细胞运动机制的理解。因此,三维培养(3D)模型是必要的,它能够模拟在体内的条件和微环境。本研究开发了一种微流控芯片,并采用基质材料作为细胞支架。为了进行三维细胞迁移实验,细胞在三维环境中培养,并通过填充基质的微通道侵入。此外,我们确定癌细胞的运动与白细胞介素6 (IL-6)浓度相关。在这里,我们成功地开发了一个可视化和量化三维细胞迁移试验的原型。
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引用次数: 0
A Novel Non-Enzymatic PEDOT:PSS/GO/MnO2 Based Biosensor For Hydrogen Peroxide Detection in Biological Samples 一种新型无酶PEDOT:PSS/GO/MnO2生物传感器用于生物样品中过氧化氢的检测
Pub Date : 2019-11-01 DOI: 10.1109/NANOMED49242.2019.9130613
V. Sirdeshmukh, Indrayani S. Kadu, Shreshtha S. Mishra, Anup A. Kale
Hydrogen Peroxide (H2O2) is a well-known reactive oxygen species produced in various biological phenomena. In various pathological and physiological conditions, higher concentrations of H2O2 can cause lipid peroxidation, DNA base modification, protein degradation, etc. H2O2 present in quantities of about $20-50 mumathrm{M}$ or more can have deleterious effects as it can easily dissolve in aqueous solutions and penetrate biological membranes easily. Hence, sensitive and selective detection of H2O2is important under physiological conditions. In this work, we report a non-enzymatic electrochemical method for the facile and sensitive detection of H2O2. We explored the approach of using polymer-nanocomposite as an efficient transducer platform. We synthesized three-phase composite polymer system of PEDOT:PSS/GO/MnO2, comprising of poly(3,4-ethylenedioxythiophene): poly(styrene-sulfonate) (PEDOT:PSS), graphene oxide (GO) and manganese dioxide (MnO2). On being exposed to H2O2, MnO2 undergoes a redox reaction which is responsible for the sensing ability of this material. The composite was prepared using the conventional solution mixing method and then used to modify screen printed electrodes. The physicochemical characterization was carried out by Raman Spectroscopy and Fourier Transform Infrared Spectroscopy. Cyclic Voltammetry results showed that the nanocomposite showed high electrochemical activity for the detection of hydrogen peroxide (H2O2) in alkaline medium. The PEDOT:PSS/GO/MnO2 based electrode exhibits high sensitivity and selectivity for electrochemical detection of H2O2 with a sensitivity of $0.5mu mathrm{M}$. The present study demonstrates the promising ability of this novel nanocomposite for fabrication of non-enzymatic H2O2 biosensors. This method can further be explored for point-of-care detection.
过氧化氢(H2O2)是在各种生物现象中产生的一种众所周知的活性氧。在各种病理生理条件下,高浓度的H2O2可引起脂质过氧化、DNA碱基修饰、蛋白质降解等。H2O2的存在量约为$20-50 mumathrm{M}$或更多,因为它很容易溶解在水溶液中并很容易穿透生物膜,因此会产生有害影响。因此,在生理条件下对h2o2进行灵敏、选择性的检测是非常重要的。在这项工作中,我们报告了一种简便灵敏的非酶电化学检测H2O2的方法。我们探索了使用聚合物-纳米复合材料作为高效换能器平台的方法。合成了由聚(3,4-乙烯二氧噻吩)、聚(苯乙烯磺酸盐)(PEDOT:PSS)、氧化石墨烯(GO)和二氧化锰(MnO2)组成的PEDOT:PSS/GO/MnO2三相复合聚合物体系。当暴露于H2O2时,MnO2发生氧化还原反应,这是该材料传感能力的原因。采用常规溶液混合法制备该复合材料,并将其用于丝网印刷电极的修饰。利用拉曼光谱和傅里叶变换红外光谱对其进行了理化表征。循环伏安法结果表明,该纳米复合材料对碱性介质中过氧化氢(H2O2)的检测具有较高的电化学活性。PEDOT:PSS/GO/MnO2基电极对H2O2的电化学检测具有很高的灵敏度和选择性,灵敏度为0.5mu math {M}$。目前的研究表明,这种新型纳米复合材料具有制造非酶H2O2生物传感器的良好能力。这种方法可以进一步探索点护理检测。
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引用次数: 1
Real-Time and Non-invasive Measurement of 3D Cancer Cell Invasion Process under IL-6 Cytokine Stimulation IL-6细胞因子刺激下癌细胞三维侵袭过程的实时无创测量
Pub Date : 2019-11-01 DOI: 10.1109/NANOMED49242.2019.9130623
Chun-Hao Huang, K. Lei
Cancer cells possess a broad spectrum of invasion mechanisms. Quantitative analysis of cancer cell invasion process under tested condition is important to precisely study the cellular invasion capability. In this study, a microfluidic device was developed and electrodes were embedded in the microchannel for the impedimetric measurement of cell invasion. Cancer cells were stimulated by interleukin-6 cytokine and invaded along the hydrogel-filled microchannel. The three-dimensional (3D) cell invasion process was monitored by measuring the impedance across the electrodes. The cell invasion speed could be calculated based on the cell invasion distance divided by time. Thus, 3D cell invasion process was demonstrated to be quantitatively monitored in real-time and non-invasive manner. The current development provides a promising and quantitative tool for cell invasion assay.
癌细胞具有广泛的侵袭机制。在实验条件下定量分析癌细胞的侵袭过程对精确研究细胞的侵袭能力具有重要意义。在本研究中,开发了一种微流体装置,并将电极嵌入微通道中,用于细胞入侵的阻抗测量。癌细胞受白细胞介素-6细胞因子刺激,沿水凝胶填充的微通道侵入。通过测量电极间的阻抗来监测三维(3D)细胞入侵过程。细胞侵袭速度可由细胞侵袭距离除以时间计算得到。因此,可以实时、无创地定量监测三维细胞侵袭过程。目前的研究进展为细胞侵袭试验提供了一种有前景的定量工具。
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引用次数: 0
A Minimally Invasive Flexible Micro-Needle Array as Continuous in vivo Electrochemical Glucose Sensor 一种微创柔性微针阵列连续体内电化学葡萄糖传感器
Pub Date : 2019-11-01 DOI: 10.1109/NANOMED49242.2019.9130616
Qun Mou, Junshi Li, Fengyi Zheng, Yue Cui, Yufeng Jin, Zhihong Li
We demonstrate a novel minimally invasive flexible sensor for continuous in vivo glucose monitoring. This sensor is based on a gold-coated polyimide microneedle array (MNA) electrode, which is modified with glucose oxidase. Owing to the spiky micro-needles, flexible substrate, and biocompatible materials, the enzymatic surface is able to penetrate the outer skin, and directly detect the subcutaneous glucose with high biosafety. The current results show that our device performs good response, linearity, and stability to the change of glucose concentration.
我们展示了一种用于连续体内血糖监测的新型微创柔性传感器。该传感器是基于金涂层聚酰亚胺微针阵列(MNA)电极,该电极用葡萄糖氧化酶修饰。由于具有尖状微针、柔性底物和生物相容性材料,酶表面能够穿透外皮肤,直接检测皮下葡萄糖,具有很高的生物安全性。实验结果表明,该装置对葡萄糖浓度的变化具有良好的响应性、线性性和稳定性。
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引用次数: 2
Semi-empirical Modeling for DNA Bases via Z-shaped Graphene Nanoribbon with a Nanopore 利用带纳米孔的z形石墨烯纳米带对DNA碱基进行半经验建模
Pub Date : 2019-11-01 DOI: 10.1109/NANOMED49242.2019.9130612
Asma Wasfi, F. Awwad
DNA base detection is a vastly advancing technology to obtain the bases sequence in human genome thus allowing for recognition and medication of disease. Acquiring reliable, quick, and cheap DNA sequencing facilitates personalized medicine procedure where right medication will be given to patients. In this article, a semi-empirical model is presented for calculating electron transport properties for the z-shaped sensor to identify the DNA sequence. The z-shaped sensor is made of two metallic electrodes of zigzag graphene nanoribbon (ZGNR) connected through a semiconducting channel with a pore in the middle where DNA bases are translocated. The channel is made of armchair graphene nanoribbon (AGNR) which is semiconducting. Semi-empirical model and non-equilibrium Green's function are utilized to ananlyze the various electronic characteristics. The semi-empirical model used is an expansion of the extended Hückel technique with self-consistent Hartree potential. Using the non-equilibrium Green's function combined with self-consistent extended Hückel (NEGF+SC-EH), we show that each of the bases placed within the pore whose edge carbon atoms are passivated with nitrogen leads to a unique current. Several electronic properties are studied such as electrical current and transmission spectrum of DNA bases within the sensor's nanopore. These characteristics are investigated with modification of base orientation. Our study produced unique current for each of the DNA bases inside the pore.
DNA碱基检测是一项非常先进的技术,它可以获得人类基因组中的碱基序列,从而实现疾病的识别和治疗。获得可靠、快速和廉价的DNA测序有助于个性化医疗程序,为患者提供正确的药物。本文提出了一种半经验模型,用于计算用于识别DNA序列的z形传感器的电子传递特性。z型传感器由两个锯齿形石墨烯纳米带(ZGNR)金属电极组成,电极之间通过半导体通道连接,中间有一个DNA碱基易位的孔。该通道由扶手椅石墨烯纳米带(AGNR)制成,具有半导体性质。利用半经验模型和非平衡格林函数分析了各种电子特性。所使用的半经验模型是具有自洽哈特里势的扩展h ckel技术的扩展。利用非平衡格林函数结合自一致扩展h ckel (NEGF+SC-EH),我们表明,每个碱基放置在孔内,其边缘碳原子被氮钝化,导致一个独特的电流。研究了传感器纳米孔内DNA碱基的电流和透射谱等电子特性。通过改变基取向来研究这些特性。我们的研究为孔内的每个DNA碱基产生了独特的电流。
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引用次数: 2
期刊
2019 IEEE 13th International Conference on Nano/Molecular Medicine & Engineering (NANOMED)
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