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Vaccine hesitancy under the lens: Nigeria's struggle against the worst diphtheria outbreak in decades. 镜头下的疫苗犹豫不决:尼日利亚抗击数十年来最严重白喉疫情的斗争。
IF 5.7 Q2 INFECTIOUS DISEASES Pub Date : 2024-03-27 eCollection Date: 2024-01-01 DOI: 10.1177/20499361241242218
Bashar Haruna Gulumbe, Mohammed Bashar Danlami, Abbas Bazata Yusuf, Aminu Shehu, Obi Chidiebere

The resurgence of diphtheria in Nigeria, culminating in an outbreak surpassing previous records, has spotlighted the critical imperative for robust immunization policies amidst a milieu of vaccine hesitancy. This commentary delineates the multifaceted dimensions of the current diphtheria outbreak, which started in May 2022, juxtaposed against historical outbreaks, with a focal examination of the pervasive vaccine hesitancy and its underpinning sociocultural and systemic determinants. The discourse extends to a meticulous evaluation of Nigeria's public health response, underlined by the synergy with international organizations, reflecting a global collaborative ethos in combating the diphtheria menace. A critical appraisal of the prevailing immunization policies unveils a necessity for strategic amendments to invigorate vaccination uptake, essential for curbing the diphtheria outbreak and enhancing public health resilience. The reflections herein advocate for a comprehensive, culturally resonant, and sustainable public health paradigm, encompassing a synergistic approach of policy fortification, community engagement, and international collaboration to navigate the challenges posed by vaccine-preventable diseases epitomized by the ongoing diphtheria outbreak. Through a synthesis of historical lessons, contemporary challenges, and global solidarity, this piece contributes to the broader discourse on enhancing immunization coverage and infectious disease control in Nigeria.

白喉疫情在尼日利亚再次爆发,并最终超过了以往的记录,这凸显了在疫苗犹豫不决的环境中制定强有力的免疫政策的重要性。本评论将 2022 年 5 月开始的白喉疫情与历史疫情并列,描述了当前白喉疫情的多面性,重点研究了普遍存在的疫苗犹豫及其社会文化和系统决定因素。论述延伸到对尼日利亚公共卫生应对措施的细致评估,强调了与国际组织的协同作用,反映了全球合作抗击白喉威胁的精神。对现行免疫接种政策的批判性评估表明,有必要进行战略修订,以提高疫苗接种率,这对遏制白喉疫情和增强公共卫生应变能力至关重要。本文的思考倡导一种全面的、与文化相适应的、可持续的公共卫生模式,包括政策强化、社区参与和国际合作的协同方法,以应对疫苗可预防疾病带来的挑战,白喉的持续爆发就是一个缩影。通过对历史教训、当代挑战和全球团结的综合分析,这篇文章为尼日利亚扩大免疫覆盖面和传染病控制的讨论做出了贡献。
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引用次数: 0
Invasive fungal infections in patients with multiple myeloma: a possible growing problem in hematology and infectious diseases. 多发性骨髓瘤患者的侵袭性真菌感染:血液学和传染病领域可能日益严重的问题。
IF 5.7 Q2 INFECTIOUS DISEASES Pub Date : 2024-03-26 eCollection Date: 2024-01-01 DOI: 10.1177/20499361241238518
Toni Valkovic, Lucija Marcelic, Frane Valkovic

Multiple myeloma is among the most common hematological malignancies and is characterized by a strong susceptibility to infections primarily bacterial and viral and, to a much lesser extent, fungal. There appears to be a slightly increasing frequency of invasive fungal infections. This is attributed to the use of different combinations of newer drugs and patients' exposure to increasing therapeutic lines, and thus to risk factors for invasive fungal infections, especially severe and long-term neutropenia. Novel immunotherapy modalities including bispecific antibodies and chimeric antigen receptor T-cell therapy are being introduced for the treatment of relapsing-refractory forms of the disease. Consequently, in the near future, it can be expected that myeloma patients will exhibit a significantly increased frequency of invasive fungal infections. Therefore, we must carefully monitor all epidemiological trends related to invasive fungal infections in patients with multiple myeloma, both in clinical studies and in real life. This will help us learn to prevent fungal infections, as well as quickly recognize and treat them to reduce their impact on patients' morbidity and mortality. In this review article, we describe in detail the epidemiological characteristics of invasive fungal infections in myeloma patients, the risk factors for these infections, and the treatment and prevention options.

多发性骨髓瘤是最常见的血液恶性肿瘤之一,其特点是极易受到感染,主要是细菌和病毒感染,其次是真菌感染。侵袭性真菌感染的发生率似乎略有上升。这是因为使用了不同的新药组合,患者接触的治疗药物越来越多,从而增加了侵袭性真菌感染的风险因素,尤其是严重和长期的中性粒细胞减少症。目前正在引入新型免疫疗法,包括双特异性抗体和嵌合抗原受体 T 细胞疗法,用于治疗复发性难治性疾病。因此,在不久的将来,可以预见骨髓瘤患者发生侵袭性真菌感染的频率将显著增加。因此,我们必须在临床研究和现实生活中仔细监测与多发性骨髓瘤患者侵袭性真菌感染有关的所有流行病学趋势。这将有助于我们学会预防真菌感染,并快速识别和治疗真菌感染,从而降低真菌感染对患者发病率和死亡率的影响。在这篇综述文章中,我们将详细介绍骨髓瘤患者侵袭性真菌感染的流行病学特征、这些感染的风险因素以及治疗和预防方案。
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引用次数: 0
Ibrutinib-associated cutaneous mucormycosis due to an Apophysomyces species: report of a case and review of the literature. 由一种 Apophysomyces 菌引起的伊布替尼相关皮肤粘液瘤病:一例病例报告和文献综述。
IF 5.7 Q2 INFECTIOUS DISEASES Pub Date : 2024-03-26 eCollection Date: 2024-01-01 DOI: 10.1177/20499361241241199
Trung Minh Nguyen, Eva Amenta, Lynne Chapman, Sarvari Yellapragada, Bhuvaneswari Krishnan, Jonathan Lim, Richard J Hamill

The use of ibrutinib, a Bruton tyrosine kinase inhibitor, has been associated with invasive fungal infections (IFIs). We describe a case of Apophysomyces infection associated with long-term use of ibrutinib for the treatment of chronic lymphocytic leukemia as well as perform a literature review of Mucormycosis infections in patients on ibrutinib. Our review found that the onset of IFI can occur within months to years of starting tyrosine kinase inhibitors. These reports provide a more complete picture of the risk of IFI while patients are on ibrutinib. Our case also demonstrates the utility of molecular techniques in the diagnosis of IFI, as the diagnosis was made using 28S rDNA/internal transcribed spacer PCR.

使用布鲁顿酪氨酸激酶抑制剂伊布替尼与侵袭性真菌感染(IFIs)有关。我们描述了一例与长期使用伊布替尼治疗慢性淋巴细胞白血病有关的 Apophysomyces 感染病例,并对使用伊布替尼的患者中的 Mucormycosis 感染进行了文献综述。我们的综述发现,IFI 可在开始使用酪氨酸激酶抑制剂的数月至数年内发病。这些报告更全面地说明了患者在服用伊布替尼期间发生 IFI 的风险。我们的病例还证明了分子技术在 IFI 诊断中的实用性,因为诊断是通过 28S rDNA/内部转录间隔聚合酶链式反应完成的。
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引用次数: 0
Nirmatrelvir/ritonavir and remdesivir against symptomatic treatment in high-risk COVID-19 outpatients to prevent hospitalization or death during the Omicron era: a propensity score-matched study. 尼马瑞韦/利托那韦和雷米地韦对高危 COVID-19 门诊患者进行对症治疗,以预防 Omicron 时代的住院或死亡:倾向得分匹配研究。
IF 5.7 Q2 INFECTIOUS DISEASES Pub Date : 2024-03-26 eCollection Date: 2024-01-01 DOI: 10.1177/20499361241236582
Sandra Rajme-López, Bernardo A Martinez-Guerra, Carla M Román-Montes, Karla M Tamez-Torres, Andrea C Tello-Mercado, Karen M Tepo-Ponce, Zurisadai Segura-Ortíz, Abigail López-Aguirre, Orianlid Del Rocío Gutiérrez-Mazariegos, Oswaldo Lazcano-Delgadillo, Rafael Nares-López, María F González-Lara, David Kershenobich-Stalnikowitz, José Sifuentes-Osornio, Alfredo Ponce-de-León, Guillermo M Ruíz-Palacios

Background: Even though worldwide death rates from coronavirus disease 2019 (COVID-19) have decreased, the threat of disease progression and death for high-risk groups continues. Few direct comparisons between the available severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) antivirals have been made.

Objective: We aimed to compare two SARS-CoV-2 antivirals (nirmatrelvir/ritonavir and remdesivir) against all-cause hospitalization or death.

Design: This is a propensity score-matched cohort study.

Methods: We included all high-risk outpatients with COVID-19 in a tertiary referral center in Mexico City from 1 January 2022 to 31 July 2023. The primary outcome was all-cause hospitalization or death 28 days after symptom onset. The secondary outcome was COVID-19-associated hospitalization or death 28 days after symptom onset. Logistic regression analysis for characteristics associated with the primary outcome and a multi-group comparison with Kaplan-Meier survival estimates were performed.

Results: Of 1566 patients analyzed, 783 did not receive antiviral treatment, 451 received remdesivir, and 332 received nirmatrelvir/ritonavir. The median age was 60 years (interquartile range: 46-72), 62.5% were female and 97.8% had at least one comorbidity. The use of nirmatrelvir/ritonavir was associated with an absolute risk reduction of 8.8% and a relative risk reduction of 90% for all-cause hospitalization or death. The use of remdesivir was associated with an absolute risk reduction of 6.4% and a relative risk reduction of 66% for all-cause hospitalization or death. In multivariable analysis, both antivirals reduced the odds of 28-day all-cause hospitalization or death [nirmatrelvir/ritonavir odds ratio (OR) 0.08 - 95% confidence interval (CI): 0.03-0.19, remdesivir OR 0.29 - 95% CI: 0.18-0.45].

Conclusion: In high-risk COVID-19 outpatients, early antiviral treatment with nirmatrelvir/ritonavir or remdesivir was associated with lower 28-day all-cause hospitalization or death.

背景:尽管2019年冠状病毒病(COVID-19)的全球死亡率已经下降,但疾病进展和高危人群死亡的威胁仍在继续。很少有人对现有的严重急性呼吸系统综合征冠状病毒 2(SARS-CoV-2)抗病毒药物进行直接比较:我们旨在比较两种 SARS-CoV-2 抗病毒药物(尼尔马特韦/利托那韦和雷米地韦)对全因住院或死亡的影响:这是一项倾向得分匹配队列研究:我们纳入了2022年1月1日至2023年7月31日期间墨西哥城一家三级转诊中心的所有COVID-19高危门诊患者。主要结果是症状出现 28 天后全因住院或死亡。次要结果是症状出现 28 天后与 COVID-19 相关的住院或死亡。研究人员对与主要结果相关的特征进行了逻辑回归分析,并对卡普兰-梅耶生存率进行了多组比较:在分析的 1566 名患者中,783 人未接受抗病毒治疗,451 人接受了雷米替韦治疗,332 人接受了尼马替韦/利托那韦治疗。中位年龄为 60 岁(四分位间范围:46-72 岁),62.5% 为女性,97.8% 至少患有一种合并症。使用尼马瑞韦/利托那韦可使全因住院或死亡的绝对风险降低 8.8%,相对风险降低 90%。使用雷米替韦可使全因住院或死亡的绝对风险降低 6.4%,相对风险降低 66%。在多变量分析中,两种抗病毒药物都降低了28天全因住院或死亡的几率[尼马瑞韦/利托那韦的几率比(OR)为0.08 - 95%置信区间(CI):0.03-0.19,雷米地韦的几率比为0.29 - 95%置信区间(CI):0.18-0.45]:结论:在COVID-19高危门诊患者中,早期使用尼马瑞韦/利托那韦或雷米替韦进行抗病毒治疗与降低28天全因住院或死亡相关。
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引用次数: 0
Fournier's gangrene: a review of predictive scoring systems and practical guide for patient management. Fournier 坏疽:预测评分系统回顾及患者管理实用指南。
IF 3.8 Q2 INFECTIOUS DISEASES Pub Date : 2024-03-19 eCollection Date: 2024-01-01 DOI: 10.1177/20499361241238521
Daniel Bowen, Thomas Hughes, Patrick Juliebø-Jones, Bhaskar Somani

This article aims to provide a practical guide for patient management and an overview of the predictive scorings for Fournier's gangrene (FG) that are available to aid clinicians. A literature was performed reviewing currently used scoring systems for FG and presenting a practical guide for its management based on the available evidence. There are four specific scoring systems available for the assessment of FG although few other non-specific and generic tools also exist. These specific tools include Laboratory Risk Indicator for Necrotizing Fasciitis, Fournier's Gangrene Severity Index, Uludag Fournier's Gangrene Severity Index, and Simplified Fournier's Gangrene Severity Index and help calculate expected mortality. Our proposed algorithm covers primary assessment, resuscitative interventions, initial investigations, urgent care, post-operative care, and long-term follow-up. The management of the FG patient can be divided into initial resuscitation, surgical debridement, ongoing ward management with antibiotic therapy, wound reconstruction, and long-term follow-up. Each facet of care is vital and requires multidisciplinary team expertise for optimal outcomes. Whilst mortality continues to improve, it remains significant, reflecting the severe and life-threatening nature of FG. More research is certainly needed into how this care is individualised, and to ensure that long-term outcomes in FG include quality of life measures after discharge.

本文旨在为患者管理提供实用指南,并概述现有的福尼尔坏疽(Fournier's gangrene,FG)预测评分方法,为临床医生提供帮助。本文对目前使用的福尼尔坏疽评分系统进行了文献综述,并根据现有证据提供了一份实用的患者管理指南。目前有四种特定的评分系统可用于 FG 评估,但也存在一些其他非特定和通用的工具。这些特定工具包括坏死性筋膜炎实验室风险指标、福尼尔坏疽严重程度指数、Uludag 福尼尔坏疽严重程度指数和简化福尼尔坏疽严重程度指数,并有助于计算预期死亡率。我们建议的算法包括初步评估、复苏干预、初步检查、紧急护理、术后护理和长期随访。对 FG 患者的管理可分为初步复苏、手术清创、持续的病房管理与抗生素治疗、伤口重建和长期随访。每个护理环节都至关重要,需要多学科团队的专业知识才能达到最佳效果。虽然死亡率在不断提高,但仍然很高,这反映了 FG 的严重性和危及生命的性质。当然,还需要开展更多的研究来探讨如何进行个性化护理,并确保 FG 的长期疗效包括出院后的生活质量。
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引用次数: 0
Short-term versus usual-term antibiotic treatment for uncomplicated Staphylococcus aureus bacteremia: a systematic review and meta-analysis. 无并发症金黄色葡萄球菌菌血症的短期抗生素治疗与常规抗生素治疗:系统综述和荟萃分析。
IF 5.7 Q2 INFECTIOUS DISEASES Pub Date : 2024-03-11 eCollection Date: 2024-01-01 DOI: 10.1177/20499361241237615
Santiago Grillo Perez, Candida Diaz-Brochero, Javier Ricardo Garzon Herazo, Oscar Mauricio Muñoz Velandia

Introduction: Uncomplicated Staphylococcus aureus bacteremia remains a leading cause of morbidity and mortality in hospitalized patients. Current guidelines recommend a minimum of 14 days of treatment.

Objective: To evaluate the efficacy and safety of short versus usual antibiotic therapy in adults with uncomplicated S. aureus bacteremia (SAB).

Methods: We developed a search strategy to identify systematic review and meta-analysis of non-randomized studies (NRS), comparing short versus usual or long antibiotic regimens for uncomplicated SAB in MEDLINE, Embase, and the Cochrane Register up to June 2023. The risk of bias was assessed using the ROBINS I tool. The meta-analysis was performed using Review Manager software with a random effect model.

Results: Six NRS with a total of 1700 patients were included. No significant differences were found when comparing short versus prolonged antibiotic therapy as defined by the authors for 90-day mortality [odds ratio (OR): 1.09; 95% confidence interval (CI): 0.82-1.46, p: 0.55; I2 = 0%] or 90-day recurrence or relapse of bacteremia [OR: 0.72; 95% CI: 0.31-1.68, p: 0.45; I2 = 26%]. Sensitivity analysis showed similar results when comparing a predefined duration of <14 days versus ⩾14 days and when excluding the only study with a high risk of bias.

Conclusion: Shorter-duration regimens could be considered as an alternative option for uncomplicated SAB in low-risk cases. However, based on a small number of studies with significant methodological limitations and risk of bias, the benefits and harms of shorter regimens should be analyzed with caution. Randomized clinical trials are needed to determine the best approach regarding the optimal duration of therapy.

导言:无并发症金黄色葡萄球菌菌血症仍是住院病人发病和死亡的主要原因。现行指南建议至少治疗 14 天:目的:评估短期抗生素治疗与常规抗生素治疗对无并发症金黄色葡萄球菌菌血症(SAB)成人患者的疗效和安全性:我们制定了一项检索策略,以确定截至 2023 年 6 月在 MEDLINE、Embase 和 Cochrane Register 中对非随机研究(NRS)进行的系统综述和荟萃分析,这些研究比较了无并发症 SAB 的短期与常规或长期抗生素治疗方案。偏倚风险采用 ROBINS I 工具进行评估。荟萃分析使用Review Manager软件和随机效应模型进行:结果:共纳入了 6 项 NRS,患者总数达 1700 人。比较作者定义的短期抗生素治疗与长期抗生素治疗,在90天死亡率[比值比(OR):1.09;95% 置信区间(CI):0.82-1.46,P:0.55;I2 = 0%]或90天菌血症复发或复发率[比值比(OR):0.72;95% 置信区间(CI):0.31-1.68,P:0.45;I2 = 26%]方面未发现明显差异。敏感性分析表明,在比较预先确定的疗程与⩾14天的疗程以及排除唯一一项偏倚风险较高的研究时,结果相似:结论:对于低风险病例中的无并发症 SAB,可考虑采用持续时间较短的治疗方案。然而,基于少数研究存在明显的方法学局限性和偏倚风险,应谨慎分析缩短疗程的利弊。需要通过随机临床试验来确定最佳治疗时间的最佳方法。
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引用次数: 0
Infective endocarditis due to Citrobacter koseri following testicular trauma: case report and literature review. 睾丸创伤后由柯氏柠檬酸杆菌引起的感染性心内膜炎:病例报告和文献综述。
IF 5.7 Q2 INFECTIOUS DISEASES Pub Date : 2024-03-11 eCollection Date: 2024-01-01 DOI: 10.1177/20499361241237617
Julian Orlando Casallas-Barrera, Claudia Marcela Poveda-Henao, Karen Andrea Mantilla-Viviescas, Edwin Silva-Monsalve

Infective endocarditis (IE) is a condition with low prevalence but high mortality rates within intensive care units. Microbiologically, most cases are attributed to Gram-positive cocci, while Gram-negative bacilli are less commonly involved. This case report describes a patient with IE caused by Citrobacter koseri (C. koseri) with secondary bacteremia due to blunt testicular trauma and epididymitis. We conducted a review of the literature to assess the clinical and associated risk factors of this underreported condition. Elderly and urinary tract infections could be associated with this entity. Cefazolin was used as the final targeted treatment. The use of precision medicine in IE is required for specific interventions.

感染性心内膜炎(IE)是重症监护病房中一种发病率低但死亡率高的疾病。从微生物学角度来看,大多数病例都是由革兰氏阳性球菌引起的,而革兰氏阴性杆菌则不太常见。本病例报告描述了一名由科氏柠檬酸杆菌(C. koseri)引起的 IE 患者,该患者因睾丸钝挫伤和附睾炎继发菌血症。我们对文献进行了回顾,以评估这种报告不足的病症的临床和相关风险因素。老年人和尿路感染可能与这种病症有关。头孢唑啉被用作最终的靶向治疗药物。在对IE进行特定干预时,需要使用精准医疗。
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引用次数: 0
Corrigendum to Gram negative bacteria related urinary tract infections: spectrum of antimicrobial resistance over 9 years in a University tertiary referral Hospital. 革兰氏阴性菌相关尿路感染的更正:一家大学三级转诊医院 9 年来的抗菌药耐药性谱。
IF 5.7 Q2 INFECTIOUS DISEASES Pub Date : 2024-02-29 eCollection Date: 2024-01-01 DOI: 10.1177/20499361241234513

[This corrects the article DOI: 10.1177/20499361241228342.].

[此处更正了文章 DOI:10.1177/20499361241228342]。
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引用次数: 0
Implementing health worker training on sepsis in South Eastern Nigeria using innovative digital strategies: an interventional study. 在尼日利亚东南部使用创新数字策略开展有关败血症的卫生工作者培训:一项干预性研究。
IF 5.7 Q2 INFECTIOUS DISEASES Pub Date : 2024-02-29 eCollection Date: 2024-01-01 DOI: 10.1177/20499361241233816
Akaninyene Otu, Obiageli Onwusaka, Daniel E Otokpa, Ukam Edadi, Ubong Udoh, Peter Yougha, Chinelo Oduche, Okey Okuzu, Shevin T Jacob, Jamie Rylance, Emmanuel Effa

Background: Sepsis is a leading cause of morbidity and mortality especially in low- and middle-income countries such as Nigeria. Training of health workers using digital platforms may improve knowledge and lead to better patient outcomes.

Objectives: To assess the effectiveness of a digital health educational module on sepsis in improving the knowledge of medical doctors in Cross River State Nigeria on the diagnosis and management of patients presenting with sepsis.

Design: Quasi-experimental analytical study.

Methods: We developed and deployed a sepsis module through an innovative application (Sepsis tutorial app) to doctors in Calabar, Nigeria. We assessed quantitative pre- and post-intervention knowledge scores for those completing the tutorial on sepsis between both assessments. A user satisfaction survey evaluated the content of the tutorial and the usability of the app.

Results: One hundred and two doctors completed the course. There were more males than females (58.8% versus 41.2%). Over half (52%) were junior doctors, a minority were general practitioners and house officers (3% and 5%, respectively), and 72.6% had practiced for periods ranging from 1 to 15 years post-qualification. Gender and age appeared to have no significant association with pre- and post-test scores. The oldest age group (61-70) had the lowest mean pre- and post-test scores, while general practitioners had higher mean pre- and post-test scores than other cadres. The majority (95%) of participants recorded higher post-test than pre-test scores with a significant overall increase in mean scores (25.5 ± 14.7%, p < 0.0001). Participants were satisfied with the content and multimodal delivery of the material and found the app usable.

Conclusion: Digital training using context-responsive platforms is feasible and may be used to close the critical knowledge gap required to respond effectively to medical emergencies such as sepsis in low- to middle-income settings.

背景:败血症是发病和死亡的主要原因,尤其是在尼日利亚等中低收入国家。利用数字平台对卫生工作者进行培训可提高他们的知识水平,从而改善患者的治疗效果:评估脓毒症数字健康教育模块在提高尼日利亚克罗斯河州医生对脓毒症患者的诊断和管理知识方面的效果:准实验分析研究:我们通过创新应用程序(败血症教程应用程序)为尼日利亚卡拉巴尔的医生开发并部署了败血症模块。在两次评估之间,我们对完成败血症教程的人员进行了干预前和干预后知识量化评分。用户满意度调查对教程内容和应用程序的可用性进行了评估:112 名医生完成了课程。男性多于女性(58.8% 对 41.2%)。半数以上(52%)为初级医生,少数为全科医生和内科医生(分别为 3% 和 5%),72.6% 的医生在获得资格后从业 1 至 15 年不等。性别和年龄似乎与测试前后的得分没有明显关系。年龄最大的组别(61-70 岁)的测试前和测试后平均得分最低,而全科医生的测试前和测试后平均得分高于其他骨干。大多数参与者(95%)的测试后平均分高于测试前平均分,且平均分总体上有显著提高(25.5 ± 14.7%, p 结论:测试后平均分高于测试前平均分,这说明在培训过程中使用了情境响应式平台:使用情境响应平台进行数字化培训是可行的,可用于缩小在中低收入环境下有效应对败血症等医疗紧急情况所需的关键知识差距。
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引用次数: 0
Evaluation of the diagnostic utility of metagenomic next-generation sequencing testing for pathogen identification in infected hosts: a retrospective cohort study. 评估元基因组下一代测序检测对感染宿主病原体鉴定的诊断效用:一项回顾性队列研究。
IF 5.7 Q2 INFECTIOUS DISEASES Pub Date : 2024-02-23 eCollection Date: 2024-01-01 DOI: 10.1177/20499361241232854
Austin Williams, William Zach Webster, Chao Cai, Alexander Milgrom, Majdi Al-Hasan, P Brandon Bookstaver

Background: Metagenomic next-generation sequencing (mNGS) testing identifies thousands of potential pathogens in a single blood test, though data on its real-world diagnostic utility are lacking.

Objectives: Determine the diagnostic utility of mNGS testing in practice and factors associated with high clinical utility.

Design: Retrospective cohort study of mNGS tests ordered from June 2018 through May 2020 at a community teaching hospital.

Methods: Tests were included if ordered for diagnostic purposes in patients with probable or high clinical suspicion of infection. Exclusions included patient expiration, hospice care, or transfer outside of the institution. Utility criteria were established a priori by the research team. Two investigators independently reviewed each test and categorized it to either high or low diagnostic utility. Reviewer discordance was referred to a third investigator. The stepwise multiple regression method was used to identify clinical factors associated with high diagnostic utility.

Results: Among 96 individual tests from 82 unique patients, 80 tests met the inclusion criteria for analysis. At least one potential pathogen was identified in 58% of tests. Among 112 pathogens identified, there were 74 bacteria, 25 viruses, 12 fungi, and 1 protozoon. In all, 46 tests (57.5%) were determined to be of high diagnostic utility. Positive mNGS tests were identified in 36 (78.3%) and 11 (32.4%) of high and low diagnostic utility tests, respectively (p < 0.001). Antimicrobials were changed after receiving test results in 31 (67.4%) of high utility tests and 4 (11.8%) of low utility tests (p < 0.0001). In the multiple regression model, a positive test [odds ratio (OR) = 10.9; 95% confidence interval (CI), 3.2-44.4] and consultation with the company medical director (OR = 3.6; 95% CI, 1.1-13.7) remained significantly associated with high diagnostic utility.

Conclusion: mNGS testing resulted in high clinical utility in most cases. Positive mNGS tests were associated with high diagnostic utility. Consultation with the Karius® medical director is recommended to maximize utility.

背景:元基因组下一代测序(mNGS)检测可在单次血液检测中识别数千种潜在病原体,但缺乏有关其实际诊断效用的数据:确定 mNGS 检测在实践中的诊断效用以及与高临床效用相关的因素:对一家社区教学医院从 2018 年 6 月至 2020 年 5 月订购的 mNGS 检测进行回顾性队列研究:如果是为诊断目的而对可能感染或临床高度怀疑感染的患者所订购的检验项目,则纳入研究范围。排除项目包括患者过期、临终关怀或转院。实用性标准由研究小组事先制定。两名研究人员独立审查每项检验,并将其分为诊断效用高或诊断效用低两类。审阅者意见不一致时,将交由第三位研究人员处理。采用逐步多元回归法确定与高诊断效用相关的临床因素:在来自 82 名患者的 96 项检验中,有 80 项检验符合纳入分析的标准。58%的检测至少发现了一种潜在病原体。在确定的 112 种病原体中,有 74 种细菌、25 种病毒、12 种真菌和 1 种原生动物。共有 46 项检测(57.5%)被确定为具有高度诊断效用。在诊断效用高和诊断效用低的检测中,分别有 36 项(78.3%)和 11 项(32.4%)发现了 mNGS 检测阳性(p p 结论:在大多数情况下,mNGS 检测都具有很高的临床效用。阳性 mNGS 检测与高诊断效用相关。建议咨询 Karius® 医疗总监,以最大限度地提高效用。
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Therapeutic Advances in Infectious Disease
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