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Quantitative analysis of Δ8- and Δ9-tetrahydrocannabinol metabolites and isomers: a rapid assay in urine by LC-MS/MS.
IF 3.8 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-23 DOI: 10.1007/s00216-025-05738-x
Marco Ballotari, Michael T Truver, Nayana A Sojin, Lauren A Agliano, Rhea Parimoo, Jennifer L Hoyer, Amie J Goodin, Deepthi S Varma, Chris W Chronister, Kay Roussos-Ross, Bruce A Goldberger

An increasing number of cannabis-related products have become available and entered the market, particularly those containing cannabidiol (CBD) and Δ8-tetrahydrocannabinol (Δ8-THC). Analytical methods for cannabinoids in urine have been described extensively in the literature. However, methods providing good resolution for distinguishing interferences from THC positional isomers are needed. The aim of this project was to develop and validate a liquid chromatography with tandem mass spectrometry (LC-MS/MS) method to quantitate a broad panel of cannabinoids in authentic urine specimens. The method was optimized to quantitate Δ8-THC and Δ9-THC, 11-OH-Δ8-THC and 11-OH-Δ9-THC, Δ8-THC-COOH and Δ9-THC-COOH, CBD, 7-COOH-CBD, CBG, and CBN, and validated with the guidance of the American Academy of Forensic Sciences Standards Board (ASB) Standard 036. The validated assay was then used to evaluate urine samples collected over various time points from female patients (N = 69) enrolled in a study assessing prevalence of marijuana/CBD use during pregnancy from November 2022 to May 2024. Δ8- and Δ9- isomers were chromatographically resolved and successfully separated. For all analytes, the lower limit of quantitation (LLOQ) was determined to be 10 ng/mL, and the upper limit of quantitation (ULOQ) was 1000 ng/mL. In the authentic samples, the most frequently detected analyte was Δ9-THC-COOH, with a median concentration of 278 ng/mL (n = 38). Δ9-THC and 11-OH-Δ9-THC were detected with a median concentration of 42.4 ng/mL (n = 5) and 65.7 ng/mL (n = 34), respectively. Δ8-THC-COOH was detected in n = 3 specimens, with a median concentration of 25.5 ng/mL. The study provided a rapid assay for the analysis of cannabinoids in urine.

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引用次数: 0
Comprehensive quantification of C4 to C26 free fatty acids using a supercritical fluid chromatography-mass spectrometry method in pharmaceutical-grade egg yolk powders intended for total parenteral nutrition use.
IF 3.8 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-23 DOI: 10.1007/s00216-025-05732-3
Mark Dennis Chico Retrato, Anh Vu Nguyen, S J Kumari A Ubhayasekera, Jonas Bergquist

Free fatty acids (FFAs) are important energy sources and significant for energy transport in the body. They also play a crucial role in cellular oxidative stress responses, following cell membrane depolarization, making accurate quantification of FFAs essential. This study presents a novel supercritical fluid chromatography-mass spectrometry (SFC-MS) method using selected ion recording in negative electrospray ionization mode, enabling rapid quantification of 31 FFAs within 6 min without derivatization. FFAs are identified and quantified using an HSS C18 SB column and a secondary mobile phase consisting of methanol with formic acid by detecting their [M - H]- ions. Calibration curves showed strong linearity (R2 ≥ 0.9910), spanning 1000-12,000 ng/mL for short-chain FFAs and 50-1200 ng/mL for medium- and long-chain FFAs. The method achieves detection limits as low as 1 ng/µL for short-chain FFAs and 0.05 pg/µL for other FFAs per on-column injection. The method demonstrated high accuracy and precision, with bias and coefficients of variation maintained below 15% across five quality control levels. Freeze-thaw and autosampler stability studies confirmed the behavior of matrix-matched standards under optimal storage conditions. The validated method was applied to the analysis of pharmaceutical-grade egg yolk powders, using 13 deuterated FFAs as internal standards (IS) in comparison with heptadecanoic acid (C17:0). Significant variations in FFA quantification using two different IS approaches underscore the importance of selecting an appropriate IS. In summary, this study introduces a reliable and validated SFC-MS method for analyzing FFAs ranging from C4 to C26, requiring minimal sample preparation.

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引用次数: 0
Certified reference materials for GMO analysis-more than 25 years of GMO CRM production at EC JRC.
IF 3.8 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-23 DOI: 10.1007/s00216-024-05713-y
Stefanie Trapmann, Thomas P J Linsinger, Robert Koeber

Certified reference materials (CRMs) play a crucial role in ensuring the quality of analytical measurements. Particularly, the EU labelling legislation on genetically modified organisms (GMOs) in food and feed products explicitly requires CRMs for its implementation. The CRMs are used to calibrate and control the quantitative real-time polymerase chain reaction (qPCR) method and support official control laboratories, such as National Reference Laboratories (NRLs), in maintaining their ISO/IEC 17025 accreditation. The Joint Research Centre of the European Commission (EC JRC) is specialized in the production of reference materials and has been producing GMO CRMs since 1998. Together with a validated event-specific qPCR method, these GMO CRMs form the EU reference system for the quantification of EU-authorized GMO events in food and feed products and ensure a common GMO labelling threshold. This article gives a retrospective view on the more than 25 years of GMO CRM production at JRC. It describes requirements for GMO CRMs in view of an EU market authorization under (EC) No. 1829/2003. The evolution and major improvements of the production of GMO CRMs at JRC are summarized as well as the current understanding of the EU's GMO reference system for GMO quantification and its impact on commutability. It provides insights into GMO CRM sales and their worldwide distribution. This information may be useful for policymakers and researchers in understanding the current EU GMO measurement landscape and to anticipate possible future demands related to GMO events based on new genomic techniques (NGTs).

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引用次数: 0
Carbon nanotubes stabilized in chitosan sponge (CNT-CS) as a new alternative clean-up sorbent for pesticide multiresidue determination in eggplants using QuEChERS and UHPLC-MS/MS 壳聚糖海绵稳定碳纳米管(CNT-CS)作为一种新的清洁吸附剂用于QuEChERS和UHPLC-MS/MS测定茄子中农药多残留。
IF 3.8 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-22 DOI: 10.1007/s00216-025-05736-z
Cleusa F. Zanchin, Luana Floriano, Bruna S. de Farias, Luiz A. A. Pinto, Tito R. S. Cadaval Jr., Osmar D. Prestes, Renato Zanella

The continuous development and application of pesticides in agriculture require robust multiresidue detection methods to guarantee food safety. This study introduces a novel method for multiresidue determination of pesticides in eggplants using the QuEChERS procedure, incorporating a clean-up step using carbon nanotubes stabilized in chitosan sponge (CNT-CS) and ultra-high performance liquid chromatography with tandem mass spectrometry (UHPLC-MS/MS) for analysis. Upon identifying the optimal extraction conditions, various sorbents were assessed for their efficacy in the dispersive solid-phase extraction (d-SPE). Among these, the biosorbent CNT-CS emerged as the most efficient and cost-effective material, showing the best recovery results from spiked blank samples. The validation demonstrated that the method was adequate for analyzing 111 pesticides in eggplant samples with practical method quantification limits from 5 to 25 µg kg−1. When applied to commercial eggplant samples, 27 pesticides were detected, demonstrating the importance of the proposed method. It is noteworthy that the conducted work represents the first report on the use of the biosorbent CNT-CS in the clean-up step of the QuEChERS method. The results obtained in the validation and application steps demonstrate that the proposed method is an excellent alternative for monitoring programs.

Graphical Abstract

农药在农业中的不断发展和应用,需要强有力的多残留检测方法来保障食品安全。本文介绍了一种利用QuEChERS方法测定茄子中农药多残留的新方法,该方法采用壳聚糖海绵稳定碳纳米管(CNT-CS)净化步骤和超高效液相色谱-串联质谱(UHPLC-MS/MS)进行分析。在确定最佳萃取条件后,评估了各种吸附剂在分散固相萃取(d-SPE)中的效果。其中,生物吸附剂CNT-CS是最有效和最具成本效益的材料,在加标空白样品中显示出最佳的回收率。验证结果表明,该方法可用于茄子样品中111种农药的定量分析,实用方法定量限为5 ~ 25µg kg-1。应用于商品茄子样品,检测出27种农药,证明了该方法的重要性。值得注意的是,所进行的工作代表了在QuEChERS方法的清理步骤中使用生物吸附剂CNT-CS的第一份报告。在验证和应用步骤中获得的结果表明,所提出的方法是监测程序的一个很好的替代方案。
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引用次数: 0
An effective cell-penetrating peptide-based loading method to extracellular vesicles and enhancement in cellular delivery of drugs. 一种有效的细胞穿透肽基细胞外囊泡装载方法和增强药物的细胞递送。
IF 3.8 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-21 DOI: 10.1007/s00216-025-05742-1
Jin Zhang, Ning Su, Wei Liu, Mengran Li, Haoyang Zheng, Bing Li, Xue Jin, Mingxia Gao, Xiangmin Zhang

Extracellular vesicles (EVs) have been demonstrated to own the advantages in evading phagocytosis, crossing biological barriers, and possessing excellent biocompatibility and intrinsic stability. Based on these characteristics, EVs have been used as effective therapeutic carriers for drug delivery, but the low drug loading capacity greatly limits further applications. Herein, we developed a drug loading method based on cell-penetrating peptide (CPP) to enhance the encapsulation of therapeutic reagents in EVs, and EVs-based drug delivery system achieved higher killing efficacy to tumor cells. Urinary EVs and chemotherapy reagent doxorubicin (DOX) were used as model. It is easy to conjugate CPP with DOX (CPP-DOX) through the linker N-succinimidyl 3-maleimidopropionate (SMP). CPP-DOX was incubated with EVs under a mild condition, promoting the encapsulation of DOX into EV cavities. CPP-DOX-EVs showed strong anticancer ability since EVs delivery facilitated the uptake by cancer cells. EVs loading of CPP-DOX exhibited higher drug loading efficiency at 37.18%, presenting about 2.5 times increase in efficiency over EVs loading of DOX through passive incubation. Easy operation and controllable condition further reinforce the advantages compared with other loading methods. CPP-based drug loading method provides an effective strategy for EVs-based drug delivery system.

细胞外囊泡(Extracellular vesicles, EVs)在逃避吞噬作用、跨越生物屏障、具有良好的生物相容性和内在稳定性等方面具有优势。基于这些特点,电动汽车已被用作有效的药物递送载体,但其低载药能力极大地限制了其进一步的应用。本研究提出了一种基于细胞穿透肽(cell-penetrating peptide, CPP)的载药方法,增强了治疗药物在ev中的包封性,基于ev的给药系统对肿瘤细胞具有更高的杀伤效果。以尿ev和化疗试剂阿霉素(DOX)为模型。通过连接剂n -丁二酰3-马来酰亚胺丙酸(SMP), CPP很容易与DOX偶联(CPP-DOX)。CPP-DOX在温和条件下与EV孵育,促进DOX在EV腔内的包封。cpp - dox - ev表现出较强的抗癌能力,因为ev的递送促进了癌细胞的摄取。负载CPP-DOX的电动汽车的载药效率为37.18%,比被动孵育负载DOX的电动汽车的载药效率提高了约2.5倍。操作方便,工况可控,进一步增强了其与其他装载方式相比的优势。基于cpp的载药方法为ev给药系统提供了有效的策略。
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引用次数: 0
Application of predictive modeling tools for the identification of Ocimum spp. herbal products. 预测建模工具在中药产品鉴别中的应用。
IF 3.8 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-20 DOI: 10.1007/s00216-025-05735-0
Evelyn J Abraham, Sarah J Chamberlain, Wilmer H Perera, R Teal Jordan, Joshua J Kellogg

Species identification of botanical products is a crucial aspect of research and regulatory compliance; however, botanical classification can be difficult, especially for morphologically similar species with overlapping genetic and metabolomic markers, like those in the genus Ocimum. Untargeted LC-MS metabolomics coupled with multivariate predictive modeling provides a potential avenue for improving herbal identity investigations, but the current dearth of reference materials for many botanicals limits the applicability of these approaches. This study investigated the potential of using greenhouse-grown authentic Ocimum to build predictive models for classifying commercially available Ocimum products. We found that three species, O. tenuiflorum, O. gratissimum, and O. basilicum, were chemically distinct based on their untargeted UPLC-MS/MS profiles when grown in controlled settings; combined with an orthogonal high-performance thin-layer chromatography (HPTLC) approach, O. tenuiflorum materials revealed two distinct chemotypes which could confound analysis. Three predictive models (partial least squares, LASSO regression, and random forest) were employed to extrapolate these findings to commercially available products; however, the controlled materials were significantly different from external samples, and all three chemometric models were unreliable in classifying external materials. LASSO was the most successful when classifying new greenhouse samples. Overall, this study highlights how growing and processing conditions can influence the complexity of botanical metabolome profiles; further studies are needed to characterize the factors driving herbal products' phytochemistry in conjunction with chemometric predictive modeling.

植物产品的物种鉴定是研究和法规遵从性的一个重要方面;然而,植物学分类可能很困难,特别是对于形态相似的物种,具有重叠的遗传和代谢组学标记,如八角莲属。非靶向LC-MS代谢组学与多变量预测建模相结合,为改进草药鉴定研究提供了一条潜在的途径,但目前缺乏许多植物药的参考材料限制了这些方法的适用性。本研究探讨了利用温室种植的真品茜草建立预测模型的潜力,用于对市售茜草产品进行分类。我们发现,在受控环境下生长的三种植物,O. tenuiflorum, O. gratissimum和O. basilicum,基于其非靶向UPLC-MS/MS谱,化学上是不同的;结合正交高效薄层色谱(HPTLC)方法,发现了两种不同的化学型,这可能会混淆分析。三种预测模型(偏最小二乘、LASSO回归和随机森林)被用来将这些发现外推到市售产品;然而,受控材料与外部样品存在显著差异,三种化学计量模型对外部材料的分类都不可靠。LASSO在对新的温室样本进行分类时最为成功。总的来说,这项研究强调了生长和加工条件如何影响植物代谢组谱的复杂性;需要进一步的研究来描述驱动草药产品植物化学的因素,并结合化学计量学预测模型。
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引用次数: 0
Aptamer-based fluorescence biosensor for rapid detection of chloramphenicol based on pyrene excimer switch. 基于芘准分子开关的配体荧光生物传感器快速检测氯霉素。
IF 3.8 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-20 DOI: 10.1007/s00216-025-05733-2
Jizhao Zhang, Qiang Zhao

Chloramphenicol (CAP) is widely used in treating bacteria infection in animals and humans. However, the accumulation of CAP in food and environment caused serious health risk to human. Consequently, sensitive and selective detection of CAP is of great importance in environmental monitoring and food safety. Among various analytical methods, aptamer-based biosensors exhibit great potentials for CAP detection. Here, we developed an aptamer-based biosensor for rapid fluorescence detection of CAP based on pyrene excimer switch by using a newly selected short DNA aptamer with high affinity. The aptamer was labeled with pyrene molecules at both ends. The binding of CAP to the aptamer probe caused two pyrene molecules close to each other and the formation of a pyrene excimer, which induced the increase of the fluorescence signal from the pyrene excimer. CAP detection was achieved by measuring the fluorescence signal changes of the aptamer probes with dual pyrene labels. Under optimized conditions, the developed aptamer biosensor showed a detection limit of 24.4 nmol/L for CAP. The aptamer-based fluorescence sensor could quantify CAP in diluted tap water and lake water, exhibiting potentials for the application in real sample sensing of CAP.

氯霉素(CAP)广泛用于治疗动物和人类的细菌感染。然而,CAP在食品和环境中的积累对人类健康造成了严重的危害。因此,CAP的灵敏、选择性检测在环境监测和食品安全中具有重要意义。在各种分析方法中,基于适配体的生物传感器在CAP检测中显示出巨大的潜力。本研究利用新选择的高亲和力短DNA适体,开发了一种基于芘准分子开关的生物传感器,用于CAP的快速荧光检测。适体两端用芘分子标记。CAP与适体探针的结合使两个芘分子相互靠近,形成一个芘准分子,诱导芘准分子发出的荧光信号增强。通过双芘标记测量适体探针的荧光信号变化实现CAP检测。在优化条件下,所构建的适体生物传感器对CAP的检测限为24.4 nmol/L。基于适体的荧光传感器可以定量稀释自来水和湖水中的CAP,具有应用于实际样品检测的潜力。
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引用次数: 0
Full sequencing of 100mer sgRNA via tandem mass spectrometry by targeted RNase H digestion with customized probes. 通过定制探针靶向RNase H酶切,通过串联质谱法对100mer sgRNA进行全测序。
IF 3.8 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-20 DOI: 10.1007/s00216-025-05737-y
Christopher Gawlig, Rebecca Hirschberger, Güngör Hanci, Saskia Schott, Shima Marandi, Ida Ronja Hesse, Michael Rühl

The use of single-guide RNA (sgRNA) for gene editing using the CRISPR Cas9 system has become a powerful technique in various fields, especially with the growing interest in such molecules as therapeutic options in the last years. An important parameter for the use of these molecules is the verification of the correct sgRNA oligonucleotide sequence. Apart from next-generation sequencing protocols, mass spectrometry (MS) has been proven as a powerful technique for this purpose. The protocol and investigations presented in this work show an optimal digestion and 100% sequence coverage of sgRNA, while top-down approaches or other ribonuclease (RNase) digestion strategies obtain a sequence coverage of up to 80-90% utilizing multiple RNases. The results in this publication were obtained by utilizing DNA-RNA hybrid GAPmer-like probes and RNase H, an enzyme which specifically hydrolyzes RNA in DNA-RNA double strands. We assessed the optimal length of the DNA segment of these hybrid probes to maximize the specificity of the RNase H digestion and to achieve complete sequence confirmation by tandem MS analysis of the resulting digestion products. Furthermore, we showed that the approach is applicable for the identification of common synthesis-related impurities, like truncations and elongations. Despite the fact that the accessibility of this approach for highly modified molecules is limited to nucleotides which are not 2'-O-methylated, the optimized sequence coverage makes it a viable method.

利用CRISPR Cas9系统使用单导RNA (sgRNA)进行基因编辑已经成为各个领域的一项强大技术,特别是在过去几年中,人们对这些分子作为治疗选择的兴趣日益浓厚。使用这些分子的一个重要参数是验证正确的sgRNA寡核苷酸序列。除了下一代测序方案外,质谱(MS)已被证明是一种强大的技术。这项工作中提出的方案和研究表明,sgRNA的最佳酶切和100%的序列覆盖率,而自上而下的方法或其他核糖核酸酶(RNase)酶切策略利用多个rna酶获得高达80-90%的序列覆盖率。本文的结果是利用DNA-RNA杂交gapmer样探针和RNase H获得的,RNase H是一种特异性水解DNA-RNA双链RNA的酶。我们评估了这些杂交探针的最佳DNA片段长度,以最大限度地提高RNase H酶切的特异性,并通过串联质谱分析所得到的酶切产物实现完整的序列确认。此外,我们证明了该方法适用于识别常见的合成相关杂质,如截断和延伸。尽管这种方法对高度修饰分子的可及性仅限于非2'- o -甲基化的核苷酸,但优化的序列覆盖范围使其成为一种可行的方法。
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引用次数: 0
Robust discrimination between closely related species of salmon based on DNA fragments. 基于DNA片段的密切相关的鲑鱼物种之间的强大区分。
IF 3.8 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-18 DOI: 10.1007/s00216-024-05724-9
Debra Ellisor, Mary Gregg, Angela Folz, Antonio Possolo

Closely related species of Salmonidae, including Pacific and Atlantic salmon, can be distinguished from one another based on nucleotide sequences from the cytochrome c oxidase sub-unit 1 mitochondrial gene (COI), using ensembles of fragments aligned to genetic barcodes that serve as digital proxies for the relevant species. This is accomplished by exploiting both the nucleotide sequences and their quality scores recorded in a FASTQ file obtained via Next Generation (NextGen) Sequencing of mitochondrial DNA extracted from Coho salmon caught with hook and line in the Gulf of Alaska. The alignment is done using MUSCLE (Muscle 5.2) [1], applied to multiple versions of each fragment perturbed according to the nucleobase identification error probabilities underlying the quality scores. The Damerau-Levenshtein distance was used to determine the genetic barcode of the candidate species that is closest to each aligned, perturbed fragment. The "votes" that the sampled fragments cast for the different candidate species are then pooled and converted into identification probabilities, using weights determined by the entropy of the fragment-specific identification probability distributions. This novel approach to quantify the uncertainty associated with measurements made using NextGen Sequencing can be applied to discriminate closely related species, hence to value-assignment for reference materials supporting determinations of the authenticity of seafood, for example, NIST Reference Materials 8256 and 8257 (Coho salmon) [2].

密切相关的鲑鱼科物种,包括太平洋和大西洋鲑鱼,可以根据细胞色素c氧化酶亚基1线粒体基因(COI)的核苷酸序列,使用与遗传条形码相一致的片段集合作为相关物种的数字代理来区分彼此。这是通过利用从阿拉斯加湾用钩和线捕获的Coho鲑鱼中提取的线粒体DNA的下一代(NextGen)测序获得的FASTQ文件中记录的核苷酸序列和质量分数来完成的。比对使用MUSCLE (MUSCLE 5.2) (Edgar in Nat common 13:6968, 2022)完成,应用于每个片段的多个版本,根据质量分数下的核碱基识别错误概率进行扰动。Damerau-Levenshtein距离用于确定与每个对齐的扰动片段最接近的候选物种的遗传条形码。然后将采样片段投给不同候选物种的“选票”汇总并转换为识别概率,使用由片段特定识别概率分布的熵确定的权重。这种量化与NextGen测序测量相关的不确定性的新方法可用于区分密切相关的物种,从而用于支持海产品真实性测定的参考物质的值分配,例如NIST参考物质8256和8257 (Coho salmon) (Ellisor等人,2021)。
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引用次数: 0
Tools and databases for studying data in the glycosciences 用于研究糖科学数据的工具和数据库。
IF 3.8 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-16 DOI: 10.1007/s00216-025-05730-5
Kiyoko F. Aoki-Kinoshita, Joseph Zaia
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引用次数: 0
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