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Evaluating Boolean relationships in Configurational Comparative Methods 在配置比较法中评估布尔关系
IF 1.4 4区 医学 Q2 MATHEMATICS, INTERDISCIPLINARY APPLICATIONS Pub Date : 2024-01-01 DOI: 10.1515/jci-2023-0014
Luna De Souter
Abstract Configurational Comparative Methods (CCMs) aim to learn causal structures from datasets by exploiting Boolean sufficiency and necessity relationships. One important challenge for these methods is that such Boolean relationships are often not satisfied in real-life datasets, as these datasets usually contain noise. Hence, CCMs infer models that only approximately fit the data, introducing a risk of inferring incorrect or incomplete models, especially when data are also fragmented (have limited empirical diversity). To minimize this risk, evaluation measures for sufficiency and necessity should be sensitive to all relevant evidence. This article points out that the standard evaluation measures in CCMs, consistency and coverage, neglect certain evidence for these Boolean relationships. Correspondingly, two new measures, contrapositive consistency and contrapositive coverage, which are equivalent to the binary classification measures specificity and negative predictive value, respectively, are introduced to the CCM context as additions to consistency and coverage. A simulation experiment demonstrates that the introduced contrapositive measures indeed help to identify correct CCM models.
摘要 配置比较方法(CCM)旨在通过利用布尔充分性和必要性关系,从数据集中学习因果结构。这些方法面临的一个重要挑战是,这种布尔关系在现实生活数据集中往往无法满足,因为这些数据集通常包含噪声。因此,CCM 只能推断出近似符合数据的模型,这就带来了推断出不正确或不完整模型的风险,尤其是当数据也是碎片化的(经验多样性有限)时。为了最大限度地降低这种风险,充分性和必要性的评估措施应该对所有相关证据敏感。本文指出,CCM 的标准评估指标--一致性和覆盖率--忽略了这些布尔关系的某些证据。因此,本文在 CCM 中引入了两个新的评估指标--对偶一致性和对偶覆盖率,这两个指标分别相当于二元分类的特异性和负预测值,是对一致性和覆盖率的补充。模拟实验证明,引入的对等度量确实有助于识别正确的 CCM 模型。
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引用次数: 0
Comparison of open-source software for producing directed acyclic graphs. 制作有向无环图的开源软件比较。
IF 1.4 4区 医学 Q2 MATHEMATICS, INTERDISCIPLINARY APPLICATIONS Pub Date : 2024-01-01 Epub Date: 2024-01-10 DOI: 10.1515/jci-2023-0031
Amy J Pitts, Charlotte R Fowler

Many software packages have been developed to assist researchers in drawing directed acyclic graphs (DAGs), each with unique functionality and usability. We examine five of the most common software to generate DAGs: TikZ, DAGitty, ggdag, dagR, and igraph. For each package, we provide a general description of its background, analysis and visualization capabilities, and user-friendliness. Additionally in order to compare packages, we produce two DAGs in each software, the first featuring a simple confounding structure, while the second includes a more complex structure with three confounders and a mediator. We provide recommendations for when to use each software depending on the user's needs.

为了帮助研究人员绘制有向无环图(DAG),已经开发了许多软件包,每种软件都有独特的功能和可用性。我们研究了五种最常用的生成 DAG 的软件:TikZ、DAGitty、ggdag、dagR 和 igraph。我们对每个软件包的背景、分析和可视化能力以及用户友好性进行了总体描述。此外,为了对软件包进行比较,我们在每个软件中制作了两个 DAG,第一个 DAG 包含一个简单的混杂结构,第二个 DAG 包含一个包含三个混杂因素和一个中介因素的更复杂的结构。我们将根据用户的需求,为何时使用每种软件提供建议。
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引用次数: 0
LINGUISTIC FEATURES AND PRESENTATION OF MATERIALS ON ENGLISH TEXTBOOK “WHEN ENGLISH RINGS A BELL” BASED ON BSNP 基于BSNP的英语教材《当英语响铃》的语言特征及材料呈现
4区 医学 Q2 MATHEMATICS, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-06-17 DOI: 10.30998/inference.v5i3.12353
Hilda Zubaidah, Gustaman Saragih
The textbooks play an important role in teaching and learning activity in language program. Because of the various textbooks provided, textbook analysis is seen as an important thing to be conducted in order to find out how the components of the textbook are served. This study was aimed to investigate to what extent the English textbook entitled “Bahasa Inggris: When English Rings a Bell” for eighth grade students meet the criteria of BSNP (linguistic features and presentation of materias). The linguistic features consist of language appropriateness while the presentation of materials consist of content appropriates, presentation appropriateness, and graphic appropriateness. This study was descriptive qualitative approach. The instrument used to collect the data is document study used in the form of checklist. A checklist was made adopted from BSNP (2011) framework. The results of this study showed that textbook entitled “When English Rings a Bell” for Eight Grade is suitable to be used in teaching learning process. The textbook achieved the fulfilment score of language appropriateness (100%), content appropriateness (81,25%), presentation appropriateness (88,89%), and graphics appropriateness (97,64%). This book is categorized “good” textbook by achieving the score of 95,07%. Thus, it can be concluded that textbook is suitable to be used in order to help the teaching learning process in the classroom with the help of other sources and teacher improvisation.
教材在语言教学活动中起着重要的作用。由于提供的教科书种类繁多,因此教科书分析被视为一项重要的工作,以便了解教科书的组成部分是如何服务的。摘要本研究旨在探讨八年级英语教材《马来文:当英语铃响时》在多大程度上符合BSNP(语言特征和材料呈现)的标准。语言特征包括语言适宜性,而材料呈现则包括内容适宜性、呈现适宜性和图形适宜性。本研究采用描述性定性方法。收集数据的工具为文献研究法,采用核对表的形式。清单采用了BSNP(2011)框架。本研究结果表明,八年级教材《当英语铃响》适合在教学学习过程中使用。该教材在语言恰当性(100%)、内容恰当性(81,25%)、表达恰当性(88,89%)、图形恰当性(97,64%)方面达到了满足分。这本书被评为“优秀”教科书,得分为95,07%。因此,可以得出结论,教科书适合在其他资源和教师即兴的帮助下,在课堂上帮助教学学习过程。
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引用次数: 0
Bounding the probabilities of benefit and harm through sensitivity parameters and proxies 通过敏感性参数和代理来确定收益和损害的概率
IF 1.4 4区 医学 Q2 MATHEMATICS, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-01-01 DOI: 10.48550/arXiv.2303.05396
J. Peña
Abstract We present two methods for bounding the probabilities of benefit (a.k.a. the probability of necessity and sufficiency, i.e., the desired effect occurs if and only if exposed) and harm (i.e., the undesired effect occurs if and only if exposed) under unmeasured confounding. The first method computes the upper or lower bound of either probability as a function of the observed data distribution and two intuitive sensitivity parameters, which can then be presented to the analyst as a 2-D plot to assist in decision-making. The second method assumes the existence of a measured nondifferential proxy for the unmeasured confounder. Using this proxy, tighter bounds than the existing ones can be derived from just the observed data distribution.
我们提出了两种方法来限定在未测量混杂下的利益(即必要性和充分性的概率,即当且仅当暴露时产生期望的效果)和危害(即当且仅当暴露时产生不期望的效果)的概率。第一种方法计算概率的上界或下界,作为观察到的数据分布和两个直观的灵敏度参数的函数,然后可以将其作为二维图呈现给分析人员,以协助决策。第二种方法假定存在一个可测量的非微分代理来代替不可测量的混杂因素。使用这种代理,可以从观察到的数据分布中得出比现有边界更严格的边界。
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引用次数: 1
Efficient and flexible mediation analysis with time-varying mediators, treatments, and confounders 具有时变介质、治疗和混杂因素的有效和灵活的中介分析
IF 1.4 4区 医学 Q2 MATHEMATICS, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-01-01 DOI: 10.1515/jci-2022-0077
Iván Díaz, Nicholas T Williams, K. Rudolph
Abstract Understanding the mechanisms of action of interventions is a major general goal of scientific inquiry. The collection of statistical methods that use data to achieve this goal is referred to as mediation analysis. Natural direct and indirect effects provide a definition of mediation that matches scientific intuition, but they are not identified in the presence of time-varying confounding. Interventional effects have been proposed as a solution to this problem, but existing estimation methods are limited to assuming simple (e.g., linear) and unrealistic relations between the mediators, treatments, and confounders. We present an identification result for interventional effects in a general longitudinal data structure that allows flexibility in the specification of treatment-outcome, treatment-mediator, and mediator-outcome relationships. Identification is achieved under the standard no-unmeasured-confounders and positivity assumptions. In this article, we study semi-parametric efficiency theory for the functional identifying the mediation parameter, including the non-parametric efficiency bound, and was used to propose non-parametrically efficient estimators. Implementation of our estimators only relies on the availability of regression algorithms, and the estimators in a general framework that allows the analyst to use arbitrary regression machinery were developed. The estimators are doubly robust, n sqrt{n} -consistent, asymptotically Gaussian, under slow convergence rates for the regression algorithms used. This allows the use of flexible machine learning for regression while permitting uncertainty quantification through confidence intervals and p p -values. A free and open-source R package implementing the methods is available on GitHub. The proposed estimator to a motivating example from a trial of two medications for opioid-use disorder was applied, where we estimate the extent to which differences between the two treatments on risk of opioid use are mediated by craving symptoms.
理解干预措施的作用机制是科学探究的一个主要的总体目标。使用数据实现这一目标的统计方法的集合称为中介分析。自然的直接和间接效应提供了与科学直觉相匹配的中介定义,但它们在存在时变混淆时无法识别。已经提出了干预效应作为解决这一问题的方法,但现有的估计方法仅限于假设介质、治疗和混杂因素之间的简单(例如线性)和不现实的关系。我们在一般纵向数据结构中提出了干预效应的识别结果,该数据结构允许在治疗-结果、治疗-中介和中介-结果关系的规范中具有灵活性。识别是在标准的无未测量混杂因素和积极性假设下实现的。在本文中,我们研究了半参数效率理论对于识别中介参数的泛函,包括非参数效率界,并提出了非参数效率估计。我们的估计器的实现仅依赖于回归算法的可用性,并且在允许分析人员使用任意回归机制的一般框架中开发了估计器。估计量是双鲁棒的,n sqrt{n} -一致,渐近高斯,在慢收敛速率下使用的回归算法。这允许使用灵活的机器学习进行回归,同时允许通过置信区间和p - p值对不确定性进行量化。GitHub上有一个实现这些方法的免费开源R包。我们对阿片类药物使用障碍的两种药物试验中的一个激励例子应用了拟议的估计量,其中我们估计了两种治疗方法在阿片类药物使用风险方面的差异在多大程度上是由渴望症状介导的。
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引用次数: 0
Identification of in-sample positivity violations using regression trees: The PoRT algorithm 使用回归树识别样本内阳性违规:PoRT算法
4区 医学 Q2 MATHEMATICS, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-01-01 DOI: 10.1515/jci-2022-0032
Gabriel Danelian, Yohann Foucher, Maxime Léger, Florent Le Borgne, Arthur Chatton
Abstract Background The positivity assumption is crucial when drawing causal inferences from observational studies, but it is often overlooked in practice. A violation of positivity occurs when the sample contains a subgroup of individuals with an extreme relative frequency of experiencing one of the levels of exposure. To correctly estimate the causal effect, we must identify such individuals. For this purpose, we suggest a regression tree-based algorithm. Development Based on a succession of regression trees, the algorithm searches for combinations of covariate levels that result in subgroups of individuals with a low (un)exposed relative frequency. Application We applied the algorithm by reanalyzing four recently published medical studies. We identified the two violations of the positivity reported by the authors. In addition, we identified ten subgroups with a suspicion of violation. Conclusions The PoRT algorithm helps to detect in-sample positivity violations in causal studies. We implemented the algorithm in the R package RISCA to facilitate its use.
从观察性研究中得出因果推论时,积极假设是至关重要的,但在实践中经常被忽视。当样本中包含一个子群体,其经历某一暴露水平的相对频率非常高时,就会发生违反阳性的情况。为了正确估计因果关系,我们必须确定这样的个体。为此,我们提出了一种基于回归树的算法。基于一系列回归树,该算法搜索协变量水平的组合,从而产生低(非)暴露相对频率的个体亚群。我们通过重新分析最近发表的四项医学研究来应用该算法。我们查明了作者报告的两起违反阳性的事件。此外,我们确定了十个涉嫌违规的子群体。结论PoRT算法有助于在因果研究中检测样本内阳性违规。为了便于使用,我们在R包RISCA中实现了该算法。
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引用次数: 0
Personalized decision making – A conceptual introduction 个性化决策-概念介绍
4区 医学 Q2 MATHEMATICS, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-01-01 DOI: 10.1515/jci-2022-0050
Scott Mueller, Judea Pearl
Abstract Personalized decision making targets the behavior of a specific individual, while population-based decision making concerns a subpopulation resembling that individual. This article clarifies the distinction between the two and explains why the former leads to more informed decisions. We further show that by combining experimental and observational studies, we can obtain valuable information about individual behavior and, consequently, improve decisions over those obtained from experimental studies alone. In particular, we show examples where such a combination discriminates between individuals who can benefit from a treatment and those who cannot – information that would not be revealed by experimental studies alone. We outline areas where this method could be of benefit to both policy makers and individuals involved.
个性化决策针对的是特定个体的行为,而基于群体的决策关注的是与该个体相似的亚群体。本文阐明了两者之间的区别,并解释了为什么前者会导致更明智的决策。我们进一步表明,通过结合实验和观察研究,我们可以获得有关个体行为的有价值的信息,因此,比单独从实验研究中获得的信息更能改进决策。特别是,我们展示了一些例子,说明这种组合区分了能够从治疗中受益的个体和不能从治疗中受益的个体——这些信息仅通过实验研究是无法揭示的。我们概述了这种方法可能对政策制定者和相关个人都有益的领域。
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引用次数: 3
Minimally capturing heterogeneous complier effect of endogenous treatment for any outcome variable 最小限度地捕获内源性治疗对任何结果变量的异质编译效应
IF 1.4 4区 医学 Q2 MATHEMATICS, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-01-01 DOI: 10.1515/jci-2022-0036
Goeun Lee, Jin‐young Choi, Myoung‐jae Lee
Abstract When a binary treatment D D is possibly endogenous, a binary instrument δ delta is often used to identify the “effect on compliers.” If covariates X X affect both D D and an outcome Y Y , X X should be controlled to identify the “ X X -conditional complier effect.” However, its nonparametric estimation leads to the well-known dimension problem. To avoid this problem while capturing the effect heterogeneity, we identify the complier effect heterogeneous with respect to only the one-dimensional “instrument score” E ( δ ∣ X ) Eleft(delta | X) for non-randomized δ delta . This effect heterogeneity is minimal, in the sense that any other “balancing score” is finer than the instrument score. We establish two critical “reduced-form models” that are linear in D D or δ delta , even though no parametric assumption is imposed. The models hold for any form of Y Y (continuous, binary, count, …). The desired effect is then estimated using either single index model estimators or an instrumental variable estimator after applying a power approximation to the effect. Simulation and empirical studies are performed to illustrate the proposed approaches.
当二元治疗D D可能是内源性的,通常使用二元仪器δ delta来识别“对编译器的影响”。如果协变量X X同时影响D D和结果Y Y,则应该控制X X以识别“X X -条件编译器效应”。然而,它的非参数估计导致了众所周知的维数问题。为了在捕获效应异质性的同时避免这一问题,我们仅针对非随机δ delta的一维“工具评分”E (δ∣X) E left (delta | X)识别编译器效应的异质性。这种效应异质性是最小的,因为任何其他“平衡分数”都比乐器分数好。我们建立了两个临界的“简化形式模型”,它们在D D或δ delta中是线性的,即使没有施加参数假设。这些模型适用于任何形式的Y Y(连续的、二进制的、计数的……)。然后使用单指标模型估计器或在对效果应用功率近似后使用工具变量估计器估计所需的效果。通过仿真和实证研究来说明所提出的方法。
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引用次数: 0
Heterogeneous interventional effects with multiple mediators: Semiparametric and nonparametric approaches 多介质的异质介入效应:半参数和非参数方法
IF 1.4 4区 医学 Q2 MATHEMATICS, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-01-01 DOI: 10.1515/jci-2022-0070
Max Rubinstein, Zach Branson, Edward Kennedy
Abstract We propose semiparametric and nonparametric methods to estimate conditional interventional indirect effects in the setting of two discrete mediators whose causal ordering is unknown. Average interventional indirect effects have been shown to decompose an average treatment effect into a direct effect and interventional indirect effects that quantify effects of hypothetical interventions on mediator distributions. Yet these effects may be heterogeneous across the covariate distribution. We consider the problem of estimating these effects at particular points. We propose an influence function-based estimator of the projection of the conditional effects onto a working model, and show under some conditions that we can achieve root-n consistent and asymptotically normal estimates. Second, we propose a fully nonparametric approach to estimation and show the conditions where this approach can achieve oracle rates of convergence. Finally, we propose a sensitivity analysis that identifies bounds on both the average and conditional effects in the presence of mediator-outcome confounding. We show that the same methods easily extend to allow estimation of these bounds. We conclude by examining heterogeneous effects with respect to the effect of COVID-19 vaccinations on depression during February 2021.
摘要:我们提出了半参数和非参数方法来估计在两个因果顺序未知的离散中介条件下的条件干预间接效应。平均干预间接效应已被证明将平均治疗效应分解为直接效应和干预间接效应,量化假设干预对中介分布的影响。然而,这些效应在协变量分布中可能是异质的。我们考虑在特定点估计这些效应的问题。我们提出了一个基于影响函数的条件效应投影估计,并证明在某些条件下我们可以获得根n一致和渐近正态估计。其次,我们提出了一种完全非参数的估计方法,并展示了这种方法可以达到oracle收敛速度的条件。最后,我们提出了一个敏感性分析,以确定在存在中介结果混淆的情况下平均和条件效应的界限。我们证明了同样的方法很容易扩展到允许对这些边界进行估计。我们通过研究2021年2月期间COVID-19疫苗接种对抑郁症的影响的异质性效应来得出结论。
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引用次数: 0
Potential outcome and decision theoretic foundations for statistical causality 统计因果关系的潜在结果和决策理论基础
4区 医学 Q2 MATHEMATICS, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-01-01 DOI: 10.1515/jci-2022-0012
Thomas S. Richardson, James M. Robins
Abstract In a recent work published in this journal, Philip Dawid has described a graphical causal model based on decision diagrams. This article describes how single-world intervention graphs (SWIGs) relate to these diagrams. In this way, a correspondence is established between Dawid's approach and those based on potential outcomes such as Robins’ finest fully randomized causally interpreted structured tree graphs. In more detail, a reformulation of Dawid s theory is given that is essentially equivalent to his proposal and isomorphic to SWIGs.
在最近发表在该杂志上的一篇文章中,Philip david描述了一个基于决策图的图形因果模型。本文描述了单世界干预图(swg)与这些图的关系。通过这种方式,david的方法与那些基于潜在结果(如Robins的最佳完全随机因果解释结构树图)的方法之间建立了对应关系。更详细地说,给出了david理论的一个重新表述,本质上等同于他的提议,并且与swg同构。
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引用次数: 2
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Journal of Causal Inference
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