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Lipid-based nanoparticles: advancing therapeutic strategies for vitiligo management. 脂基纳米颗粒:推进白癜风管理的治疗策略。
IF 2.2 4区 工程技术 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2025-07-26 eCollection Date: 2025-01-01 DOI: 10.34172/bi.30860
Mahdi Darvishi, Amir Mohammad Chekeni, Mohammad Fazelhosseini, Soheil Rajabalizadeh, Md Rizwanullah, Mohammed Aslam, Md Sabir Alam, Zeenat Iqbal, Mohd Aamir Mirza

Vitiligo, a chronic autoimmune disorder characterized by the presence of depigmented skin patches, remains a therapeutic challenge due to its multifactorial pathogenesis and the absence of highly effective treatment options. Although the exact etiology of vitiligo is not fully understood, factors such as genetic factors, oxidative stress, autoimmunity, and inflammation are implicated in the destruction of melanocytes. Current therapeutic strategies primarily focus on modulating immune responses and alleviating oxidative stress. Conventional treatments, including topical corticosteroids, phototherapy, and immunosuppressive agents, often exhibit limited efficacy and are associated with significant side effects, limiting their long-term application. In recent years, nanotechnology has emerged as a transformative approach in drug delivery systems, offering precise targeting, enhanced drug bioavailability, and minimized systemic toxicity. Nanocarrier-based systems especially lipid-based nanoparticles (LNPs) effectively address critical barriers in vitiligo treatment, such as poor drug solubility, rapid degradation, and inadequate skin penetration. Moreover, controlled drug release mechanisms offered by LNPs ensure sustained therapeutic drug levels at the target site, improving efficacy and reducing the frequency of administration. This review provides an overview of vitiligo, its pathogenesis, and the limitations of conventional treatments while highlighting recent advancements in LNPs-based drug delivery systems as a promising strategy for the effective management of vitiligo.

白癜风是一种慢性自身免疫性疾病,其特征是存在色素脱失的皮肤斑块,由于其多因素发病机制和缺乏高效的治疗方案,白癜风仍然是一个治疗挑战。虽然白癜风的确切病因尚不完全清楚,但遗传因素、氧化应激、自身免疫和炎症等因素与黑素细胞的破坏有关。目前的治疗策略主要集中在调节免疫反应和减轻氧化应激。常规治疗方法,包括外用皮质类固醇、光疗和免疫抑制剂,通常疗效有限,并伴有明显的副作用,限制了它们的长期应用。近年来,纳米技术作为一种变革性的方法出现在药物输送系统中,提供精确的靶向,提高药物的生物利用度,并最小化全身毒性。基于纳米载体的系统,特别是基于脂质纳米颗粒(LNPs)有效地解决了白癜风治疗中的关键障碍,如药物溶解度差、快速降解和皮肤渗透不足。此外,LNPs提供的受控药物释放机制确保了靶点持续的治疗药物水平,提高了疗效并减少了给药频率。本文综述了白癜风,其发病机制和传统治疗方法的局限性,同时强调了基于lnps的药物输送系统作为有效治疗白癜风的有前途的策略的最新进展。
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引用次数: 0
Biologically inspired laccase-mimicking OVA-Cu complex for degradation of organic dye pollutant: Artificial neural network modeling and optimization. 生物启发漆酶模拟OVA-Cu络合物降解有机染料污染物:人工神经网络建模和优化。
IF 2.2 4区 工程技术 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2025-07-13 eCollection Date: 2025-01-01 DOI: 10.34172/bi.30488
Sanaz Majidi, Samaneh Rashtbari, Sina Jamei, Golamreza Dehghan

Introduction: Enzyme-mimic nanomaterials, or nanozymes, have received much attention in fundamental and practical research. Laccases are crucial for environmental remediation and biotechnology. Inspired by the structure of the active site and the electron transfer mechanism of laccase, a simple laccase-like platform was designed in this work.

Methods: In this work, ovalbumin (OVA) was isolated and purified from hen egg white and conjugated with the transition metal ion (Cu2+), resulting in a soluble biopolymer (OVA‒Cu complex). Using a colorimetric method based on guaiacol oxidation, the catalytic performance of the complex was assessed, and its laccase‒like activity was verified.

Results: The kinetic parameters (Km and Vmax values) of the laccase‒mimic complex were calculated to be 0.026 mM and 0.7 μM min-1, respectively. The prepared complex showed excellent catalytic activity with a similar Km value to the natural laccase enzyme at the same mass concentration. Analysis of the synthesized system's capacity to decolorize malachite green (MG) showed its strong decolorizing potential. The outcomes demonstrated that MG can be degraded up to 84% in the presence of the OVA‒Cu complex in one hour. The decolorization metabolites were tested for toxicity against Escherichia coli and Staphylococcus aureus. The results demonstrated that less hazardous metabolites were produced after degrading MG by the OVA‒Cu complex. In addition, a 5:3:1 artificial neural network (ANN) was created to predict the decolorization efficiency (DE (%)) of MG.

Conclusion: Based on these results, it is evident that the OVA‒Cu complex has the potential to take the role of natural laccases in a variety of biosensing, environmental protection, and biotechnology applications.

酶模拟纳米材料,或纳米酶,在基础和实际研究中受到广泛关注。漆酶对环境修复和生物技术至关重要。受漆酶活性位点结构和电子传递机制的启发,本研究设计了一个简单的类漆酶平台。方法:从蛋清中分离纯化卵清蛋白(OVA),并与过渡金属离子(Cu2+)偶联,形成可溶性生物聚合物(OVA - cu复合物)。采用愈创木酚氧化比色法评价了该配合物的催化性能,并验证了其漆酶样活性。结果:模拟漆酶配合物的动力学参数Km和Vmax分别为0.026 mM和0.7 μM min-1。该配合物在相同质量浓度下具有与天然漆酶相近的Km值,具有良好的催化活性。对合成体系对孔雀石绿(MG)的脱色能力进行了分析,表明该体系具有较强的脱色潜力。结果表明,在OVA-Cu络合物的存在下,MG在1小时内可降解高达84%。对脱色代谢物进行了对大肠杆菌和金黄色葡萄球菌的毒性试验。结果表明,OVA-Cu络合物降解MG后产生的有害代谢物较少。建立了5:3:1的人工神经网络(ANN)来预测MG的脱色效率(DE(%))。结论:OVA-Cu配合物具有在生物传感、环境保护和生物技术等领域发挥天然漆酶作用的潜力。
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引用次数: 0
Targeting immune checkpoints as a new therapeutic strategy for intra-hepatic cholangiocarcinoma. 靶向免疫检查点作为肝内胆管癌的新治疗策略。
IF 2.2 4区 工程技术 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2025-07-13 eCollection Date: 2025-01-01 DOI: 10.34172/bi.31086
Eman G Khedr, Mariam A Abo Seif, Othman F Abdelzaher, Ahmed B M Mehany, Ola A El-Feky

Introduction: Intrahepatic cholangiocarcinoma (IH-CCA) is a malignancy characterized with limited response to standard chemotherapeutic strategies due to development of drug resistance. We aim to investigate new immune-therapeutic strategy through using AUNP-12 as an immune checkpoint blocker in chemically induced IH-CCA mice model.

Methods: Mice were randomly divided into 2 groups; normal control group and disease group. The disease group was further subdivided into 5 subgroups assigned according to treatment modality. The Immunotherapeutic mechanism of AUNP-12 was investigated through analysis of PD-1/PD-L1 levels and IFN-γ Levels in the tumor microenvironment. Immunohistochemical analysis of CD3+T lymphocytes and TGF-β was performed.

Results: We reported that AUNP-12 significantly decreased levels of PD-1/PD-L1 at the site of tumor with subsequent activation of CD3+T lymphocytes that secrete IFN-γ which specifically lysis tumor cells. AUNP-12 also acts through downregulation of TGF-β signaling in IH-CCA mice group treated with AUNP-12.

Conclusion: Our data indicated that AUNP-12 effectively harbors IH-CCA progression and improves the survival rate of mice. AUNP-12 acts as an immune check point blocker that specifically inhibits PD-1/PD-L1 binding, activates cytotoxic T-lymphocytes, and downregulates TGF-β signaling pathway.

简介:肝内胆管癌(IH-CCA)是一种恶性肿瘤,其特点是由于耐药的发展,对标准化疗方案的反应有限。我们的目的是通过使用AUNP-12作为免疫检查点阻断剂在化学诱导的IH-CCA小鼠模型中研究新的免疫治疗策略。方法:将小鼠随机分为2组;正常对照组和疾病组。根据治疗方式将疾病组进一步细分为5个亚组。通过分析肿瘤微环境中PD-1/PD-L1水平和IFN-γ水平,探讨AUNP-12的免疫治疗机制。免疫组化分析CD3+T淋巴细胞和TGF-β。结果:我们报道了AUNP-12显著降低肿瘤部位PD-1/PD-L1的水平,随后激活分泌IFN-γ特异性溶解肿瘤细胞的CD3+T淋巴细胞。在IH-CCA小鼠组中,AUNP-12也通过下调TGF-β信号通路发挥作用。结论:我们的数据表明,AUNP-12有效地促进了IH-CCA的进展,提高了小鼠的存活率。AUNP-12作为免疫检查点阻断剂,特异性抑制PD-1/PD-L1结合,激活细胞毒性t淋巴细胞,下调TGF-β信号通路。
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引用次数: 0
Correction to: Lactiplantibacillus plantarum exerts anticancer effects and increase the chemosensitivity of 5-fluorouracil against oral cancer cells in vitro. 校正:植物乳杆菌在体外对口腔癌细胞有抗癌作用,并增加5-氟尿嘧啶的化疗敏感性。
IF 2.2 4区 工程技术 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2025-07-08 eCollection Date: 2025-01-01 DOI: 10.34172/bi.32504
Fathima Fida, Subramaniyan Yuvarajan, Kesari Ashwath, Punchappady Devasya Rekha

[This corrects the article DOI: 10.34172/bi.30427.].

[这更正了文章DOI: 10.34172/bi.30427.]。
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引用次数: 0
Potential role of epidermal growth factor receptors (EGFR) signaling in the pathogenesis and management of hepatocellular carcinoma. 表皮生长因子受体(EGFR)信号在肝细胞癌发病和治疗中的潜在作用。
IF 2.2 4区 工程技术 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2025-07-01 eCollection Date: 2025-01-01 DOI: 10.34172/bi.30905
Samah Saleh Ahmed Al-Awadhi, Prakash Patil, Praveenkumar Shetty, Padma K Shetty, Reshma A Shetty, Vijith V Shetty

Hepatocellular carcinoma (HCC) is the most prevalent type of primary liver cancer, accounting for roughly 90% of all liver malignancies worldwide, and remains the leading cause of cancer death worldwide. Cirrhosis, viral hepatitis, non-alcoholic fatty liver disease (NAFLD), or liver injuries caused by alcohol are all chronic diseases that have a close association with the pathogenesis of HCC. A key factor in the progression of these diseases to HCC is the activation of the epidermal growth factor receptor (EGFR) signalling pathway. The ErbB family of receptor tyrosine kinases, which includes EGFR, is essential for inflammation, cell division, and liver regeneration. In HCC, EGFR expression and hyperactivation are closely associated with tumor growth, metastasis, and patient prognosis. This review explores the structural and functional aspects of EGFR, its signalling mechanisms in hepatocellular proliferation and apoptosis, its role in liver fibrosis, and the transition from chronic liver injury to advanced HCC. Moreover, crosstalk between EGFR-mediated pathways and other signalling pathways, such as PI3K/AKT/mTOR and MAPK/ERK, contributes to resistance to targeted therapies, suggesting that molecular regulation needs to be improved in strategies targeting EGFR and its downstream pathways.

肝细胞癌(HCC)是最常见的原发性肝癌类型,约占全球所有肝脏恶性肿瘤的90%,并且仍然是全球癌症死亡的主要原因。肝硬化、病毒性肝炎、非酒精性脂肪性肝病(NAFLD)或酒精引起的肝损伤都是与HCC发病密切相关的慢性疾病。这些疾病发展为HCC的一个关键因素是表皮生长因子受体(EGFR)信号通路的激活。ErbB受体酪氨酸激酶家族,包括EGFR,对炎症、细胞分裂和肝脏再生至关重要。在HCC中,EGFR的表达和过度激活与肿瘤生长、转移和患者预后密切相关。本综述探讨了EGFR的结构和功能方面,其在肝细胞增殖和凋亡中的信号机制,其在肝纤维化中的作用,以及从慢性肝损伤到晚期HCC的转变。此外,EGFR介导的通路与其他信号通路(如PI3K/AKT/mTOR和MAPK/ERK)之间的串扰有助于对靶向治疗产生耐药性,这表明针对EGFR及其下游通路的策略需要改进分子调控。
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引用次数: 0
Enhancing bone tissue engineering with polyacrylonitrile electrospun scaffolds and graphene quantum dots: A comprehensive approach to regenerative medicine. 用聚丙烯腈静电纺支架和石墨烯量子点增强骨组织工程:再生医学的综合方法。
IF 2.2 4区 工程技术 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2025-07-01 eCollection Date: 2025-01-01 DOI: 10.34172/bi.30835
Siavash Sehat-Kashani, Hadi Naddaf, Elham Hoveizi

Introduction: In this study, we utilized human endometrial mesenchymal stem cells (EnMSCs), along with a novel fibrous nanocomposite scaffold made of polyacrylonitrile/metal-organic-framework (PAN/MOF-Cu) for bone tissue engineering. Additionally, we investigated the impact of graphene quantum dots (GQDs) as a stimulant for promoting osteogenic regeneration.

Methods: To assess our approach's effectiveness, four groups of rats were evaluated for the extent of bone tissue regeneration in their calvarial defects, 10 weeks post-surgery. Histomorphometry studies used various tissue staining methods, such as H&E and Masson's trichrome. Additionally, protein structures were extracted from the Protein Databank (PDB) and subjected to Molecular Docking using Molegro software.

Results: The findings revealed that the PAN/MOF-Cu scaffold possesses remarkable characteristics conducive to cell adhesion and growth. Furthermore, histomorphometry analysis confirmed the osteoconductive properties of PAN/MOF-Cu, suggesting its significant potential for application in critical-sized bone defects, particularly when combined with EnMSCs. Additionally, the implantation of scaffold/EnMSCs/GQDs demonstrated a greater enhancement in forming new bone relative to the other experimental groups. This suggests that the presence of GQDs significantly enhances the process of bone repair. Docking results further indicated that GQDs can potentially act as agonists to ER, FGFR3, TGF-βR, and frizzled-8 during osteogenesis.

Conclusion: These findings provide further confirmation that the nanocomposite/cells/GQDs combination serves as an excellent platform for bone tissue engineering.

在这项研究中,我们利用人子宫内膜间充质干细胞(EnMSCs),以及一种由聚丙烯腈/金属-有机框架(PAN/MOF-Cu)制成的新型纤维纳米复合支架进行骨组织工程。此外,我们研究了石墨烯量子点(GQDs)作为促进成骨再生的兴奋剂的影响。方法:为了评估我们的方法的有效性,在术后10周对四组大鼠进行颅骨缺损骨组织再生程度的评估。组织形态学研究使用各种组织染色方法,如H&E和马松三色法。此外,从蛋白质数据库(PDB)中提取蛋白质结构,并使用Molegro软件进行分子对接。结果:PAN/MOF-Cu支架具有显著的有利于细胞粘附和生长的特性。此外,组织形态学分析证实了PAN/MOF-Cu的骨导电性,表明其在临界尺寸骨缺损中的应用潜力巨大,特别是当与EnMSCs结合使用时。此外,与其他实验组相比,支架/EnMSCs/GQDs的植入在形成新骨方面表现出更大的增强。这表明GQDs的存在显著地促进了骨修复过程。对接结果进一步表明,GQDs在成骨过程中可能作为ER、FGFR3、TGF-βR和zzzzed -8的激动剂。结论:这些发现进一步证实了纳米复合材料/细胞/GQDs组合是骨组织工程的良好平台。
{"title":"Enhancing bone tissue engineering with polyacrylonitrile electrospun scaffolds and graphene quantum dots: A comprehensive approach to regenerative medicine.","authors":"Siavash Sehat-Kashani, Hadi Naddaf, Elham Hoveizi","doi":"10.34172/bi.30835","DOIUrl":"10.34172/bi.30835","url":null,"abstract":"<p><p></p><p><strong>Introduction: </strong>In this study, we utilized human endometrial mesenchymal stem cells (EnMSCs), along with a novel fibrous nanocomposite scaffold made of polyacrylonitrile/metal-organic-framework (PAN/MOF-Cu) for bone tissue engineering. Additionally, we investigated the impact of graphene quantum dots (GQDs) as a stimulant for promoting osteogenic regeneration.</p><p><strong>Methods: </strong>To assess our approach's effectiveness, four groups of rats were evaluated for the extent of bone tissue regeneration in their calvarial defects, 10 weeks post-surgery. Histomorphometry studies used various tissue staining methods, such as H&E and Masson's trichrome. Additionally, protein structures were extracted from the Protein Databank (PDB) and subjected to Molecular Docking using Molegro software.</p><p><strong>Results: </strong>The findings revealed that the PAN/MOF-Cu scaffold possesses remarkable characteristics conducive to cell adhesion and growth. Furthermore, histomorphometry analysis confirmed the osteoconductive properties of PAN/MOF-Cu, suggesting its significant potential for application in critical-sized bone defects, particularly when combined with EnMSCs. Additionally, the implantation of scaffold/EnMSCs/GQDs demonstrated a greater enhancement in forming new bone relative to the other experimental groups. This suggests that the presence of GQDs significantly enhances the process of bone repair. Docking results further indicated that GQDs can potentially act as agonists to ER, FGFR3, TGF-βR, and frizzled-8 during osteogenesis.</p><p><strong>Conclusion: </strong>These findings provide further confirmation that the nanocomposite/cells/GQDs combination serves as an excellent platform for bone tissue engineering.</p>","PeriodicalId":48614,"journal":{"name":"Bioimpacts","volume":"15 ","pages":"30835"},"PeriodicalIF":2.2,"publicationDate":"2025-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12319219/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144785665","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The effect of Sertoli cell exosomes on spermatogonia stem cells differentiation. 支持细胞外泌体对精原干细胞分化的影响。
IF 2.2 4区 工程技术 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2025-07-01 eCollection Date: 2025-01-01 DOI: 10.34172/bi.30801
Farzaneh Dashti, Sima Moghaddaszadeh-Ahrabi, Masoud Maleki, Fatemeh Firouzi-Amoudizaj

Introduction: About 45-50% of infertility occurs because of men's problems. Nowadays, stem cells are used to treat infertility. Spermatogonial stem cells (SSCs) with the capability of self-regeneration, differentiation, and the transfer of genetic data to the next generation have an essential efficacy in maintaining fertility. Sertoli cells (SCs) are influential in balancing SCC proliferation and differentiation. Considering the importance of SSCs in the infertility treatment, the present study sought to evaluate the differentiation impact of exosomes on SSCs in turning sperm.

Methods: SCs and SSCs of male mice were cultured based on the aim of the study. The identity of SCs came under immunocytochemistry scrutiny. The exosome was extracted from SCs using the kit. The scanning electron microscope and Western Blot technique were used to check the validity of the extracted exosome. Complementary DNA synthesis was performed after extracting RNA from treated SSCs. The VAZA, DAZ-L, Sycp3, and Haprin gene expression was evaluated using the real-time polymerase chain reaction method.

Results: The cells known as spermatogonia cells treated with exosomes tend to experience an increase in gene expression during the third and fourth weeks after being stimulated by exosomes obtained from SCs. Specifically, the significantly increased expression of the VAZA, DAZ-L, Sycp3, and Haprin genes suggested that these cells had entered the stage of spermatogenesis.

Conclusion: The results indicated the induction of SSCs by exosomes, confirming their capability to differentiate into sperm-like cells and express some genes related to the haploid index.

导读:大约45-50%的不孕症是由男性的问题引起的。现在,干细胞被用于治疗不孕症。精原干细胞(SSCs)具有自我再生、分化和遗传信息传递给下一代的能力,在维持生育能力方面具有重要作用。支持细胞(SCs)在平衡SCC增殖和分化中起重要作用。考虑到SSCs在不孕症治疗中的重要性,本研究试图评估外泌体在精子转向过程中对SSCs的分化影响。方法:按本研究目的培养雄性小鼠的SCs和ssc。SCs的身份是在免疫细胞化学检查下确定的。使用试剂盒从SCs中提取外泌体。采用扫描电镜和Western Blot技术检测提取的外泌体的有效性。从处理的ssc中提取RNA后进行互补DNA合成。实时聚合酶链反应法检测VAZA、DAZ-L、Sycp3和Haprin基因表达。结果:经外泌体处理的精原细胞在被SCs获得的外泌体刺激后的第3周和第4周,基因表达增加。具体来说,VAZA、DAZ-L、Sycp3和Haprin基因的表达显著增加,表明这些细胞已进入精子发生阶段。结论:外泌体诱导ssc,证实其具有向精子样细胞分化并表达单倍体指数相关基因的能力。
{"title":"The effect of Sertoli cell exosomes on spermatogonia stem cells differentiation.","authors":"Farzaneh Dashti, Sima Moghaddaszadeh-Ahrabi, Masoud Maleki, Fatemeh Firouzi-Amoudizaj","doi":"10.34172/bi.30801","DOIUrl":"10.34172/bi.30801","url":null,"abstract":"<p><p></p><p><strong>Introduction: </strong>About 45-50% of infertility occurs because of men's problems. Nowadays, stem cells are used to treat infertility. Spermatogonial stem cells (SSCs) with the capability of self-regeneration, differentiation, and the transfer of genetic data to the next generation have an essential efficacy in maintaining fertility. Sertoli cells (SCs) are influential in balancing SCC proliferation and differentiation. Considering the importance of SSCs in the infertility treatment, the present study sought to evaluate the differentiation impact of exosomes on SSCs in turning sperm.</p><p><strong>Methods: </strong>SCs and SSCs of male mice were cultured based on the aim of the study. The identity of SCs came under immunocytochemistry scrutiny. The exosome was extracted from SCs using the kit. The scanning electron microscope and Western Blot technique were used to check the validity of the extracted exosome. Complementary DNA synthesis was performed after extracting RNA from treated SSCs. The <i>VAZA</i>, <i>DAZ-L</i>, <i>Sycp3</i>, and <i>Haprin</i> gene expression was evaluated using the real-time polymerase chain reaction method.</p><p><strong>Results: </strong>The cells known as spermatogonia cells treated with exosomes tend to experience an increase in gene expression during the third and fourth weeks after being stimulated by exosomes obtained from SCs. Specifically, the significantly increased expression of the <i>VAZA, DAZ-L, Sycp3</i>, and <i>Haprin</i> genes suggested that these cells had entered the stage of spermatogenesis.</p><p><strong>Conclusion: </strong>The results indicated the induction of SSCs by exosomes, confirming their capability to differentiate into sperm-like cells and express some genes related to the haploid index.</p>","PeriodicalId":48614,"journal":{"name":"Bioimpacts","volume":"15 ","pages":"30801"},"PeriodicalIF":2.2,"publicationDate":"2025-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12319214/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144785669","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Hybrid deep learning models for text-based identification of gene-disease associations. 基于文本的基因-疾病关联识别的混合深度学习模型。
IF 2.2 4区 工程技术 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2025-06-28 eCollection Date: 2025-01-01 DOI: 10.34172/bi.31226
Noor Fadhil Jumaa, Jafar Razmara, Sepideh Parvizpour, Jaber Karimpour

Introduction: Identifying gene-disease associations is crucial for advancing medical research and improving clinical outcomes. Nevertheless, the rapid expansion of biomedical literature poses significant obstacles to extracting meaningful relationships from extensive text collections.

Methods: This study uses deep learning techniques to automate this process, using publicly available datasets (EU-ADR, GAD, and SNPPhenA) to classify these associations accurately. Each dataset underwent rigorous pre-processing, including entity identification and preparation, word embedding using pre-trained Word2Vec and fastText models, and position embedding to capture semantic and contextual relationships within the text. In this research, three deep learning-based hybrid models have been implemented and contrasted, including CNN-LSTM, CNN-GRU, and CNN-GRU-LSTM. Each model has been equipped with attentional mechanisms to enhance its performance.

Results: Our findings reveal that the CNN-GRU model achieved the highest accuracy of 91.23% on the SNPPhenA dataset, while the CNN-GRU-LSTM model attained an accuracy of 90.14% on the EU-ADR dataset. Meanwhile, the CNN-LSTM model demonstrated superior performance on the GAD dataset, achieving an accuracy of 84.90%. Compared to previous state-of-the-art methods, such as BioBERT-based models, our hybrid approach demonstrates superior classification performance by effectively capturing local and sequential features without relying on heavy pre-training.

Conclusion: The developed models and their evaluation data are available at https://github.com/NoorFadhil/Deep-GDAE.

识别基因与疾病的关联对于推进医学研究和改善临床结果至关重要。然而,快速扩张的生物医学文献对从广泛的文本集合中提取有意义的关系构成了重大障碍。方法:本研究使用深度学习技术自动化这一过程,使用公开可用的数据集(EU-ADR, GAD和SNPPhenA)准确分类这些关联。每个数据集都经过严格的预处理,包括实体识别和准备,使用预训练的Word2Vec和fastText模型进行词嵌入,以及位置嵌入以捕获文本中的语义和上下文关系。本研究实现了CNN-LSTM、CNN-GRU和CNN-GRU- lstm三种基于深度学习的混合模型并进行了对比。每个模型都配备了注意机制,以提高其性能。结果:CNN-GRU模型在SNPPhenA数据集上的准确率最高,为91.23%,而CNN-GRU- lstm模型在EU-ADR数据集上的准确率为90.14%。同时,CNN-LSTM模型在GAD数据集上表现出优异的性能,准确率达到84.90%。与之前最先进的方法(如基于biobert的模型)相比,我们的混合方法通过有效地捕获局部和顺序特征而不依赖于大量的预训练,展示了卓越的分类性能。结论:建立的模型及其评价数据可在https://github.com/NoorFadhil/Deep-GDAE上获得。
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引用次数: 0
Enhanced efficacy of breast cancer treatment with etoposide-graphene oxide nanogels: A novel nanomedicine approach. 依托泊苷-氧化石墨烯纳米凝胶增强乳腺癌治疗的疗效:一种新的纳米医学方法。
IF 2.2 4区 工程技术 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2025-06-25 eCollection Date: 2025-01-01 DOI: 10.34172/bi.30848
Abbas Asoudeh-Fard, Milad Mohkam, Asghar Parsaei, Shadi Asghari, Antonio Lauto, Fatemeh Khoshnoudi, Mustafa Mhmood Salman Al-Mamoori, Mohadeseh Asoudeh-Fard, Hossine Ghasemi Sadabadi, Ahmad Gholami

Introduction: Breast cancer represents a significant global health challenge, underscoring the need for innovative therapeutic strategies. This study explores the therapeutic potential of etoposide (ETO)-loaded graphene oxide (GO) nanogels to enhance the efficacy of breast cancer treatments.

Methods: ETO-GO nanogels were synthesized and characterized using field-emission scanning electron microscopy (FE-SEM), transmission electron microscopy (TEM), X-ray diffraction (XRD), energy-dispersive X-ray spectroscopy (EDS), and Fourier-transform infrared spectroscopy (FT-IR). Cytotoxicity was evaluated through MTT assays on MCF-7 breast cancer cells and normal HUVEC cells. Apoptosis induction was assessed using DAPI staining, flow cytometry, and quantitative reverse transcription polymerase chain reaction (qRT-PCR) to analyze changes in gene expression.

Results: Characterization confirmed the formation of uniform, spherical nanogels with high ETO encapsulation efficiency. EDS and FT-IR analyses validated the successful loading of the drug onto the GO matrix. Cytotoxicity assays revealed a dose-dependent response, with significantly stronger effects observed in MCF-7 cells (20% viability at 100 µg/mL) than HUVEC cells (40% viability at the same concentration), indicating selective cytotoxicity. Apoptosis was verified through DAPI staining, which showed characteristics of nuclear fragmentation, and flow cytometry, identifying 15.35% of the treated cells as apoptotic. qRT-PCR analysis demonstrated an upregulation of pro-apoptotic genes (CASP3, CASP8, CASP9, BAX, PTEN) by as much as 8.3-fold, alongside a marked downregulation of the anti-apoptotic gene Bcl-2, confirming the potent induction of apoptosis by the nanogels.

Conclusion: ETO-GO nanogels show promising potential for targeted breast cancer therapy, providing enhanced drug delivery and selective cytotoxicity. These findings warrant further in vivo studies to validate their clinical applicability.

导言:乳腺癌是一项重大的全球健康挑战,强调需要创新的治疗策略。本研究探讨了依托泊苷(ETO)负载氧化石墨烯(GO)纳米凝胶的治疗潜力,以提高乳腺癌治疗的疗效。方法:合成ETO-GO纳米凝胶,并采用场发射扫描电镜(FE-SEM)、透射电镜(TEM)、x射线衍射(XRD)、能量色散x射线能谱(EDS)和傅里叶变换红外光谱(FT-IR)对其进行表征。通过MTT试验对MCF-7乳腺癌细胞和正常HUVEC细胞进行细胞毒性评价。采用DAPI染色、流式细胞术和定量逆转录聚合酶链反应(qRT-PCR)分析基因表达变化,评估细胞凋亡诱导情况。结果:表征证实形成了均匀的球形纳米凝胶,具有较高的ETO包封效率。EDS和FT-IR分析验证了药物成功装载到氧化石墨烯基质上。细胞毒性实验显示MCF-7细胞具有剂量依赖性,MCF-7细胞(100µg/mL时存活率为20%)比HUVEC细胞(相同浓度时存活率为40%)的作用明显更强,表明其具有选择性细胞毒性。DAPI染色显示核碎裂特征,流式细胞术证实凋亡,15.35%的处理细胞凋亡。qRT-PCR分析显示,促凋亡基因(CASP3, CASP8, CASP9, BAX, PTEN)上调高达8.3倍,同时抗凋亡基因Bcl-2显著下调,证实了纳米凝胶对细胞凋亡的有效诱导。结论:ETO-GO纳米凝胶在靶向乳腺癌治疗中具有良好的潜力,提供增强的药物传递和选择性细胞毒性。这些发现需要进一步的体内研究来验证其临床适用性。
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引用次数: 0
Free and encapsulated stem cells for skin regeneration. 自由和封装干细胞皮肤再生。
IF 2.2 4区 工程技术 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2025-06-25 eCollection Date: 2025-01-01 DOI: 10.34172/bi.30806
Kimia Esmaeilzadeh, Sina Farzi Molan, Farshid Sefat, Samad Nadri

Optimal skin healing is a sophisticated, coordinated process involving cellular and molecular interactions. Disruptions in this process can result in chronic wounds, necessitating medical intervention, particularly when the damage surpasses the body's regenerative capabilities. In response, novel therapies, especially tissue engineering and stem cell treatments, have been devised to restore tissue architecture and maximum functionality. Stem cells, which can differentiate into diverse cell types and regulate immune responses, hold significant potential for wound healing. Research demonstrates that integrating stem cells with scaffolds expedites this process, with numerous therapies advancing from laboratory studies to clinical trials. This review examines fundamental principles, classifications of stem cells, mechanisms, therapeutic applications, and challenges associated with stem cell encapsulation in wound healing.

最佳皮肤愈合是一个复杂的、协调的过程,涉及细胞和分子的相互作用。这一过程的中断可能导致慢性伤口,需要医疗干预,特别是当损害超过身体的再生能力时。因此,新的治疗方法,特别是组织工程和干细胞治疗,已经被设计出来恢复组织结构和最大的功能。干细胞可以分化成不同的细胞类型并调节免疫反应,在伤口愈合中具有重要的潜力。研究表明,干细胞与支架的结合加速了这一过程,许多治疗方法从实验室研究进入临床试验。本文综述了干细胞封装在伤口愈合中的基本原理、分类、机制、治疗应用和挑战。
{"title":"Free and encapsulated stem cells for skin regeneration.","authors":"Kimia Esmaeilzadeh, Sina Farzi Molan, Farshid Sefat, Samad Nadri","doi":"10.34172/bi.30806","DOIUrl":"10.34172/bi.30806","url":null,"abstract":"<p><p>Optimal skin healing is a sophisticated, coordinated process involving cellular and molecular interactions. Disruptions in this process can result in chronic wounds, necessitating medical intervention, particularly when the damage surpasses the body's regenerative capabilities. In response, novel therapies, especially tissue engineering and stem cell treatments, have been devised to restore tissue architecture and maximum functionality. Stem cells, which can differentiate into diverse cell types and regulate immune responses, hold significant potential for wound healing. Research demonstrates that integrating stem cells with scaffolds expedites this process, with numerous therapies advancing from laboratory studies to clinical trials. This review examines fundamental principles, classifications of stem cells, mechanisms, therapeutic applications, and challenges associated with stem cell encapsulation in wound healing.</p>","PeriodicalId":48614,"journal":{"name":"Bioimpacts","volume":"15 ","pages":"30806"},"PeriodicalIF":2.2,"publicationDate":"2025-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12413985/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145024445","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Bioimpacts
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