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Comparative molecular docking and toxicity between carbon-capped metal oxide nanoparticles and standard drugs in cancer and bacterial infections 碳顶金属氧化物纳米颗粒与标准药物在癌症和细菌感染中的分子对接和毒性比较
4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-09-05 DOI: 10.34172/bi.2023.27778
Navid Mohammadjani, Sahand Karimi, Musa Moetasam Zorab, Morahem Ashengroph, Mehran Alavi
Introduction: Nanoparticles (NPs) are of great interest in the design of various drugs due to their high surface-to-volume ratio, which result from their unique physicochemical properties. Because of the importance of examining the interactions between newly designed particles with different targets in the case of various diseases, techniques for examining the interactions between these particles with different targets, many of which are proteins, are now very common. Methods: In this study, the interactions between metal oxide nanoparticles (MONPs) covered with a carbon layer (Ag2O3, CdO, CuO, Fe2O3, FeO, MgO, MnO, and ZnO NPs) and standard drugs related to the targets of Cancer and bacterial infections were investigated using the molecular docking technique with AutoDock 4.2.6 software tool. Finally, the PRO TOX-II online tool was used to compare the toxicity (LD50) and molecular weight of these MONPs to standard drugs. Results: According to the data obtained from the semi flexible molecular docking process, MgO and Fe2O3 NPs performed better than standard drugs in several cases. MONPs typically have a lower 50% lethal dose (LD50) and a higher molecular weight than standard drugs. MONPs have shown a minor difference in binding energy for different targets in three diseases, which probably can be attributed to the specific physicochemical and pharmacophoric properties of MONPs. Conclusion: The toxicity of MONPs is one of the major challenges in the development of drugs based on them. According to the results of these molecular docking studies, MgO and Fe2O3 NPs had the highest efficiency among the investigated MONPs.
纳米粒子(NPs)由于其独特的物理化学性质而具有很高的表面体积比,因此在各种药物的设计中引起了极大的兴趣。由于检测新设计的颗粒与不同靶标之间的相互作用在各种疾病中的重要性,检测这些颗粒与不同靶标(其中许多是蛋白质)之间相互作用的技术现在非常普遍。方法:利用AutoDock 4.2.6软件工具,采用分子对接技术,研究碳层覆盖的金属氧化物纳米粒子(Ag2O3、CdO、CuO、Fe2O3、FeO、MgO、MnO、ZnO纳米粒子)与癌症和细菌感染相关靶点标准药物之间的相互作用。最后,使用PRO TOX-II在线工具比较这些MONPs与标准药物的毒性(LD50)和分子量。结果:根据半柔性分子对接过程获得的数据,MgO和Fe2O3 NPs在某些情况下优于标准药物。MONPs通常比标准药物具有更低的50%致死剂量(LD50)和更高的分子量。在三种疾病中,MONPs对不同靶点的结合能表现出微小的差异,这可能与MONPs特有的物理化学和药理特性有关。结论:MONPs的毒性是基于其开发药物的主要挑战之一。根据这些分子对接研究的结果,MgO和Fe2O3 NPs在所研究的MONPs中效率最高。
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引用次数: 0
Targeting long non-coding RNAs as new modulators in anti-EGFR resistance mechanisms 靶向长链非编码rna作为抗egfr耐药机制的新调节剂
4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-08-29 DOI: 10.34172/bi.2023.27696
Mostafa Akbarzadeh-Khiavi, Azam Safary, Yadollah Omidi
Epidermal growth factor receptor (EGFR) is a cell surface protein that plays a vital role in regulating cell growth and division. However, certain tumors, such as colorectal cancer (CRC), can exhibit an overexpression of EGFR, resulting in uncontrolled cell growth and tumor progression. To address this issue, therapies targeting and inhibiting EGFR activity have been developed to suppress cancer growth. Nevertheless, resistance to these therapies poses a significant obstacle in cancer treatment. Recent research has focused on comprehending the underlying mechanisms contributing to anti-EGFR resistance and identifying new targets to overcome this striking challenge. Long non-coding RNAs (lncRNAs) are a class of RNA molecules that do not encode proteins but play pivotal roles in gene regulation and cellular processes. Emerging evidence suggests that lncRNAs may participate in modulating resistance to anti-EGFR therapies in CRC. Consequently, combining lncRNA targeting with the existing treatment modalities could potentially yield improved clinical outcomes. Illuminating the involvement of lncRNAs in anti-EGFR resistance mechanisms of cancer cells can provide valuable insights into the development of novel anti-EGFR therapies in several solid tumors.
表皮生长因子受体(Epidermal growth factor receptor, EGFR)是一种细胞表面蛋白,在调节细胞生长和分裂中起重要作用。然而,某些肿瘤,如结直肠癌(CRC),可以表现出EGFR的过表达,导致不受控制的细胞生长和肿瘤进展。为了解决这个问题,已经开发出靶向和抑制EGFR活性的疗法来抑制癌症的生长。然而,对这些疗法的耐药性对癌症治疗构成了重大障碍。最近的研究集中在理解导致抗egfr耐药的潜在机制,并确定新的靶点来克服这一惊人的挑战。长链非编码RNA (Long non-coding RNA, lncRNAs)是一类不编码蛋白质但在基因调控和细胞过程中起关键作用的RNA分子。新出现的证据表明,lncrna可能参与调节结直肠癌患者对抗egfr治疗的耐药性。因此,将lncRNA靶向与现有治疗方式相结合可能会改善临床结果。阐明lncRNAs在癌细胞抗egfr耐药机制中的作用,可以为几种实体肿瘤的新型抗egfr疗法的开发提供有价值的见解。
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引用次数: 0
Mosaic Vaccine Design Targeting Mutational Spike Protein of SARS-COV-2 : an Immunoinformatics Approaches 针对严重急性呼吸系统综合征冠状病毒2型突变刺突蛋白的嵌合疫苗设计:一种免疫信息学方法
IF 2.6 4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-07-19 DOI: 10.34172/bi.2023.26443
Ysrafil Ysrafil, A. Imran, Prisca Syafriani Wicita, Vyani Kamba, Fihrina Mohamad, Ismail Ismail, Ayyub Harly Nurung, Noviyanty Indjar Gama, Sari Eka Pratiwi, I. Astuti, Deepak Chandran, F. Alhumaydhi, F. Nainu, T. Emran
Introduction: Presently, the development of effective vaccines against SARS-CoV-2 is absolutely necessary, especially regarding the emerging of new variants that cause increasing fatalities. Methods: In the present study we designed a mosaic vaccine targeting the mutational spike protein of coronavirus disease 2019 (COVID-19) using a bioinformatics approach. Various immunoinformatics tools were utilized to provide the highest potential for a mosaic vaccine that could activate immune responses against COVID-19. Results: The evaluation of the constructed vaccine revealed that it is antigenic and immunogenic as well as nonallergenic. The physicochemical properties also show promising characteristics, including being highly stable and hydrophilic. As expected, the vaccine shows strong interactions with several important receptors including angiotensin-converting enzyme (ACE)2, Toll-like receptor (TLR)3 and TLR8 by the lowest energy level, docking score and binding free energy. The vaccine binds to receptors via certain amino acids using various types of binding including salt bridges, hydrogen bonds and other means. As shown in computationally derived models, the interactions promote activation of the immune response by eliciting the release of various cytokines, antibodies, memory B and T cells, as well as increasing of natural killer cell and dendrite cell counts. Conclusion: Therefore, the novel designed mosaic vaccine could be considered as a potential vaccine candidate for immediate production to stem the continuing and tragic effects of the COVID-19 pandemic. However, several advanced experimental studies should be conducted to ensure and verify the effectivity and safety against SARS‑CoV‑2 in vivo.
引言:目前,开发针对严重急性呼吸系统综合征冠状病毒2型的有效疫苗是绝对必要的,特别是在出现导致死亡人数增加的新变种方面。方法:在本研究中,我们使用生物信息学方法设计了一种针对2019冠状病毒病(新冠肺炎)突变刺突蛋白的马赛克疫苗。利用各种免疫信息学工具为马赛克疫苗提供了最高潜力,该疫苗可以激活针对新冠肺炎的免疫反应。结果:构建的疫苗具有抗原性、免疫原性和非致敏性。理化性质也显示出有前景的特性,包括高度稳定和亲水性。正如预期的那样,该疫苗以最低的能量水平、对接得分和结合自由能与包括血管紧张素转换酶(ACE)2、Toll样受体(TLR)3和TLR8在内的几种重要受体表现出强烈的相互作用。疫苗通过某些氨基酸与受体结合,使用各种类型的结合,包括盐桥、氢键和其他方式。如计算推导的模型所示,相互作用通过引发各种细胞因子、抗体、记忆B和T细胞的释放,以及自然杀伤细胞和树突细胞计数的增加,促进免疫反应的激活。结论:因此,新设计的马赛克疫苗可以被视为立即生产的潜在候选疫苗,以阻止新冠肺炎大流行的持续和悲剧性影响。然而,应进行几项先进的实验研究,以确保和验证体内对抗严重急性呼吸系统综合征冠状病毒2型的有效性和安全性。
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引用次数: 0
Optimized Cutaneous Delivery of Anti-wrinkle Dipeptide KT via Molecular Modification: Preformulation, Permeation, and the Importance of Conjugate Chain Length 通过分子修饰优化皱纹二肽KT的皮肤递送:预成型、渗透和共轭链长度的重要性
IF 2.6 4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-07-18 DOI: 10.34172/bi.2023.27558
Mahsa Sayed Tabatabaei, F. Kobarfard, R. Aboofazeli, Sorour Ramezanpour, H. Moghimi
Introduction: Anti-aging peptides, such as dipeptide KT, are promising rejuvenating agents and have recently received significant attention. However, their hydrophilic nature makes skin absorption therapeutically inadequate. The excessive hydrophilicity of peptides is partially solved by lipoidal conjugates, however, the increased molecular weight due to conjugation creates a new obstacle to skin permeation. Methods: In an attempt to concurrently solve these limitations, here we have studied different short-mid chain fatty acids (C6-C18) conjugates of dipeptide KT. Different fatty acid chain lengths of C6, C8, C10, C12, C14, C16, and C18 were considered to be conjugated with KT and screened in-silico. Of those, C8, C10, and C12 were preferred and synthesized alongside two controls of the parent drug (KT) and C16 (Pal-KT) as the commercialized form to be studied mechanistically. Subsequently, they were structurally characterized and underwent preformulation, supramolecular investigations (e.g., thermal behavior, solubility, surface-acting, crystalline structure), and skin absorption studies. Results: Data showed that the synthesized conjugates substantially outperformed Pal-KT in terms of molecular weight, lipophilicity, melting point, and aqueous solubility. In addition, unlike KT, they all demonstrated amphiphilicity-related features. The maximum and minimum skin permeation were assigned to C8-KT (33.2%) and KT (0.004%). Moreover, permeability coefficients (Kp) of the C8-KT, C10-KT, C12-KT, and C16-KT were calculated to be about 22000, 3800, 3400, and 1600 times higher than KT, respectively. Conclusion: Conjugate selection with lower molecular weight fatty acids and optimal lipophilicity can positively affect the molecular properties, skin absorption, and the ability to form supramolecular structures and consequently pave the way to ‘better’ anti-wrinkle products and formulations.
引言:抗衰老肽,如二肽KT,是一种很有前途的抗衰老剂,最近受到了极大的关注。然而,它们的亲水性使皮肤吸收治疗不足。肽的过度亲水性通过类脂缀合物部分解决,然而,由于缀合而增加的分子量对皮肤渗透造成了新的障碍。方法:为了同时解决这些限制,我们研究了二肽KT的不同短中链脂肪酸(C6-C18)偶联物。C6、C8、C10、C12、C14、C16和C18的不同脂肪酸链长被认为与KT偶联并在计算机上进行筛选。其中,C8、C10和C12是优选的,并与母体药物(KT)和C16(Pal-KT)的两个对照物一起合成,作为有待机制研究的商业化形式。随后,对它们进行了结构表征,并进行了预成型、超分子研究(如热行为、溶解度、表面作用、晶体结构)和皮肤吸收研究。结果:数据显示,合成的偶联物在分子量、亲脂性、熔点和水溶性方面显著优于Pal-KT。此外,与KT不同的是,它们都表现出了与两栖性相关的特征。最大和最小皮肤渗透分别为C8-KT(33.2%)和KT(0.004%)。此外,C8-KT、C10-KT、C12-KT和C16-KT的渗透系数(Kp)分别是KT的22000、3800、3400和1600倍。结论:低分子量脂肪酸和最佳亲脂性的结合物选择可以积极影响分子性质、皮肤吸收和形成超分子结构的能力,从而为“更好”的防皱产品和配方铺平道路。
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引用次数: 0
Injectable thermosensitive chitosan/gelatin hydrogel for dental pulp stem cells proliferation and differentiation. 注射热敏壳聚糖/明胶水凝胶用于牙髓干细胞的增殖和分化。
IF 2.6 4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.34172/bi.2022.23904
Mohammad Samiei, Elaheh Dalir Abdollahinia, Nazanin Amiryaghoubi, Marziyeh Fathi, Jaleh Barar, Yadollah Omidi

Introduction: Biocompatible and biodegradable scaffolds based on natural polymers such as gelatin and chitosan (CS) provide suitable microenvironments in dental tissue engineering. In the present study, we report on the synthesis of injectable thermosensitive hydrogel (PNIPAAm-g-CS copolymer/gelatin hybrid hydrogel) for osteogenic differentiation of human dental pulp stem cells (hDPSCs). Methods: The CS-g-PNIPAAm was synthesized using the reaction of carboxyl terminated PNIPAAm with CS, which was then mixed with various amounts of gelatin solution in the presence of genipin as a chemical crosslinker to gain a homogenous solution. The chemical composition and microstructures of the fabricated hydrogels were confirmed by FT-IR and SEM analysis, respectively. To evaluate the mechanical properties (e.g., storage and loss modulus of the gels), the rheological analysis was considered. Calcium deposition and ALP activity of DPSCs were carried out using alizarin red staining and ALP test. While the live/dead assay was performed to study its toxicity, the real-time PCR was conducted to investigate the osteogenic differentiation of hDPSCs cultured on prepared hydrogels. Results: The hydrogels with higher gelatin incorporation showed a slightly looser network compared to the other ones. The hydrogel with less gelatin indicates a rather higher value of G', indicating a higher elasticity due to more crosslinking reaction of amine groups of CS via a covalent bond with genipin. All the hydrogels contained viable cells with negligible dead cells, indicating the high biocompatibility of the prepared hydrogels for hDPSCs. The quantitative results of alizarin red staining displayed a significant rise in calcium deposition in hDPSCs cultured on prepared hydrogels after 21 days. Further, hDPSCs cultured on hydrogel with more gelatin displayed the most ALP activity. The expression of late osteogenic genes such as OCN and BMP-2 were respectively 6 and 4 times higher on the hydrogel with more gelatin than the control group after 21 days. Conclusion: The prepared PNIPAAm-g-CS copolymer/gelatin hybrid hydrogel presented great features (e.g., porous structure, suitable rheological behavior, and improved cell viability), and resulted in osteogenic differentiation necessary for dental tissue engineering.

基于明胶和壳聚糖(CS)等天然聚合物的生物相容性和可生物降解支架为口腔组织工程提供了合适的微环境。在本研究中,我们报道了用于人牙髓干细胞成骨分化的可注射热敏水凝胶(PNIPAAm-g-CS共聚物/明胶混合水凝胶)的合成。方法:以端羧基PNIPAAm与CS反应合成CS-g-PNIPAAm,以皂角素为化学交联剂,将CS-g-PNIPAAm与不同量的明胶溶液混合,得到均相溶液。通过FT-IR和SEM对制备的水凝胶的化学成分和微观结构进行了表征。为了评估机械性能(例如,凝胶的储存和损失模量),考虑了流变学分析。采用茜素红染色和ALP试验检测DPSCs的钙沉积和ALP活性。通过活/死实验研究其毒性,real-time PCR检测制备的水凝胶培养的hdpsc的成骨分化情况。结果:明胶掺入量高的水凝胶,其网状结构略松散。明胶含量较少的水凝胶G′值较高,说明CS的胺基与龙胆平共价键发生交联反应较多,具有较高的弹性。所有的水凝胶都含有活细胞,死亡细胞可以忽略不计,表明制备的水凝胶对hdpsc具有很高的生物相容性。茜素红染色定量结果显示,在制备的水凝胶上培养21天后,hdpsc的钙沉积显著增加。此外,在含有较多明胶的水凝胶上培养的hDPSCs显示出最高的ALP活性。21 d后,加入明胶的水凝胶组OCN、BMP-2等后期成骨基因的表达分别比对照组高6倍和4倍。结论:制备的PNIPAAm-g-CS共聚物/明胶杂化水凝胶具有多孔结构、适宜的流变行为、提高细胞活力等特点,可实现口腔组织工程所需的成骨分化。
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引用次数: 6
Cloth-based microfluidic devices integrated onto the patch as wearable colorimetric sensors for simultaneous sweat analysis. 布基微流控装置集成到贴片上,作为可穿戴的比色传感器,用于同时进行汗液分析。
IF 2.6 4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.34172/bi.2023.24195
Bambang Kuswandi, Lukman H Irsyad, Ayik R Puspaningtyas

Introduction: In this work, a flexible, and wearable point-of-care (POC) device integrated on a pain relief patch as wearable colorimetric sensors have been developed for sweat analysis, such as lactic acid, sodium ions, and pH simultaneously. Herein, the patch has still functioned as pain relief, while it allows for sweat monitoring during exercise, and in daily activities.

Methods: It was constructed on cotton cloth using wax printing technology (batik stamp) as cloth-based microfluidic devices (CMDs). Here, it uses micro volumes of samples to perform the reaction in the sensing zones, where the sensitive reagents are immobilized so that it can collect and analyze the sweat (lactic acid, sodium ions, and pH) as the model for sweat analytes. The colorimetric analysis was conducted via a smartphone camera by using a free app (Color Grab) for a color image analysis that uses for quantitative analysis or naked eye for semi-qualitative analysis.

Results: The ∆RGB value of the CMDS shows the excellent linear correlation vs analytes concentration, where the coefficient of correlations was found for lactic acid (R2 = 0.994), sodium ion (R2 = 0.998), and pH (R2 = 0.994). The ∆RGB value shows the appropriate color value for the linear correlation of the analyte target concentrations in the sweat samples. Here, the limit of detection (LOD) was found at 45.73 µg/mL for lactic acid and 56.46 µg/mL for sodium ions. The reproducibility was found at 0.79% and 0.89%, for lactic acid and sodium ions respectively.

Conclusion: It was applied for sweat analysis during exercise, and the results show in agreement with the standard methods used in a clinical laboratory.

在这项工作中,一种灵活的、可穿戴的护理点(POC)设备集成在疼痛缓解贴片上,作为可穿戴的比色传感器,已被开发用于汗液分析,如乳酸、钠离子和pH值。在这里,贴片仍然起到缓解疼痛的作用,同时它允许在运动和日常活动中监测汗液。方法:采用蜡染印花技术在棉布上构建布基微流控装置(CMDs)。在这里,它使用微体积的样品在感应区进行反应,在感应区固定敏感试剂,以便它可以收集和分析汗液(乳酸,钠离子和pH)作为汗液分析物的模型。比色分析是通过智能手机摄像头进行的,使用免费的彩色图像分析应用程序(Color Grab)进行定量分析,或肉眼进行半定性分析。结果:CMDS的∆RGB值与分析物浓度呈良好的线性相关,其中乳酸(R2 = 0.994)、钠离子(R2 = 0.998)、pH (R2 = 0.994)均具有良好的相关系数。∆RGB值表示汗液样品中分析物目标浓度线性相关的适当颜色值。乳酸的检出限为45.73µg/mL,钠离子的检出限为56.46µg/mL。乳酸和钠离子的重现性分别为0.79%和0.89%。结论:该方法可用于运动时的汗液分析,结果与临床实验室标准方法一致。
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引用次数: 1
Preparation of poly(acrylic acid)/tricalcium phosphate nanoparticles scaffold: Characterization and releasing UC-MSCs derived exosomes for bone differentiation. 聚(丙烯酸)/磷酸三钙纳米颗粒支架的制备:用于骨分化的UC-MSCs衍生外泌体的表征和释放。
IF 2.6 4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 Epub Date: 2022-08-22 DOI: 10.34172/bi.2022.24142
Nahid Moradi, Saeid Kaviani, Mina Soufizomorrod, Simzar Hosseinzadeh, Masoud Soleimani

Introduction: This study focused on preparing a multiscale three-dimensional (3D) scaffold using tricalcium phosphate nanoparticles (triCaPNPs) in a substrate of poly(acrylic acid) (PAA) polymer for controlled release of exosomes in bone tissue engineering.

Methods: A scaffold was fabricated with a material mixture containing acrylic acid (AA) monomer, N,N'-methylenebisacrylamide (MBAA), ammonium persulfate (APS), sodium bicarbonate (SBC), and triCaPNPs called composite scaffold (PAA/triCaPNPs) via cross-linking and freeze-drying methods. The synthesis process was easy and without complex multi-steps. Through mimicking the hybrid (organic-inorganic) structure of the bone matrix, we here chose triCaPNPs for incorporation into the PAA polymer. After assessing the physicochemical properties of the scaffold, the interaction of the scaffold with human umbilical cord mesenchymal stem cells (UC-MSCs) such as attachment, proliferation, and differentiation to osteoblast cells was evaluated. In addition, we used DiI-labeled exosomes to verify the exosome entrapment and release from the scaffold.

Results: The polymerization reaction of 3D scaffold was successful. Based on results of physicochemical properties, the presence of nanoparticles in the composite scaffold enhanced the mechanical stiffness, boosted the porosity with a larger pore size range, and offered better hydrophilicity, all of which would contribute to greater cell penetration, proliferation, and then better bone differentiation. In addition, our results indicated that our scaffold could take up and release exosomes, where the exosomes released from it could significantly enhance the osteogenic commitment of UC-MSCs.

Conclusion: The current research is the first study fabricating a multiscale scaffold using triCaPNPs in the substrate of PPA polymer using a cross-linker and freeze-drying process. This scaffold could mimic the nanoscale structure and chemical combination of native bone minerals. In addition, our results suggest that the PAA/triCaPNPs scaffold could be beneficial to achieve controlled exosome release for exosome-based therapy in bone tissue engineering.

引言:本研究的重点是在聚(丙烯酸)(PAA)聚合物基质中使用磷酸三钙纳米颗粒(triCaPNP)制备多尺度三维(3D)支架,用于骨组织工程中外泌体的控制释放。方法:以丙烯酸(AA)单体、N,N’-亚甲基双丙烯酰胺(MBAA)、过硫酸铵(APS)、碳酸氢钠(SBC)和三氯化萘(triCaPNPs)为原料,通过交联和冷冻干燥法制备复合支架(PAA/triCaPNPs)。合成过程简单,没有复杂的多步骤。通过模拟骨基质的杂化(有机-无机)结构,我们选择了triCaPNP掺入PAA聚合物中。在评估支架的物理化学性质后,评估支架与人脐带间充质干细胞(UC-MSCs)的相互作用,如附着、增殖和向成骨细胞的分化。此外,我们使用DiI标记的外泌体来验证外泌体从支架中的包埋和释放。结果:三维支架聚合反应成功。基于物理化学性质的结果,纳米颗粒在复合支架中的存在增强了机械刚度,增加了孔径范围更大的孔隙率,并提供了更好的亲水性,所有这些都将有助于更大的细胞渗透、增殖,然后更好的骨分化。此外,我们的研究结果表明,我们的支架可以吸收和释放外泌体,从中释放的外泌体可以显著增强UC-MSC的成骨承诺。这种支架可以模拟天然骨矿物质的纳米级结构和化学组合。此外,我们的研究结果表明,PAA/triCaPNPs支架可能有利于在骨组织工程中实现基于外泌体的治疗的外泌体控制释放。
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引用次数: 0
Apoptotic effects of human amniotic fluid mesenchymal stem cells conditioned medium on human MCF-7 breast cancer cell line. 人羊水间充质干细胞条件培养基对人MCF-7乳腺癌细胞系凋亡的影响
IF 2.6 4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.34172/bi.2022.23813
Roghiyeh Pashaei-Asl, Maryam Pashaiasl, Esmaeil Ebrahimie, Maryam Lale Ataei, Maliheh Paknejad

Introduction: Breast cancer, as the most common malignancy among women, is shown to have a high mortality rate and resistance to chemotherapy. Research has shown the possible inhibitory role of Mesenchymal stem cells in curing cancer. Thus, the present work used human amniotic fluid mesenchymal stem cell-conditioned medium (hAFMSCs-CM) as an apoptotic reagent on the human MCF-7 breast cancer cell line.

Methods: Conditioned medium (CM) was prepared from hAFMSCs. After treating MCF-7 cells with CM, a number of analytical procedures (MTT, real-time PCR, western blot, and flow cytometry) were recruited to evaluate the cell viability, Bax and Bcl-2 gene expression, P53 protein expression, and apoptosis, respectively. Human fibroblast cells (Hu02) were used as the negative control. In addition, an integrated approach to meta-analysis was performed.

Results: The MCF-7 cells' viability was decreased significantly after 24 hours (P < 0.0001) and 72 hours (P < 0.05) of treatment. Compared with the control cells, Bax gene's mRNA expression increased and Bcl-2's mRNA expression decreased considerably after treating for 24 hours with 80% hAFMSCs-CM (P = 0.0012, P < 0.0001, respectively); an increasing pattern in P53 protein expression could also be observed. The flow cytometry analysis indicated apoptosis. Results from literature mining and the integrated meta-analysis showed that hAFMSCs-CM is able to activate a molecular network where Bcl2 downregulation stands in harmony with the upregulation of P53, EIF5A, DDB2, and Bax, leading to the activation of apoptosis.

Conclusion: Our finding demonstrated that hAFMSCs-CM presents apoptotic effect on MCF-7 cells; therefore, the application of hAFMSCs-CM, as a therapeutic reagent, can suppress breast cancer cells' viabilities and induce apoptosis.

导读:乳腺癌是妇女中最常见的恶性肿瘤,具有高死亡率和化疗耐药的特点。研究表明间充质干细胞在治疗癌症方面可能具有抑制作用。因此,本研究使用人羊水间充质干细胞条件培养基(hAFMSCs-CM)作为人MCF-7乳腺癌细胞系的凋亡试剂。方法:从hAFMSCs制备条件培养基(CM)。用CM处理MCF-7细胞后,采用MTT、real-time PCR、western blot和流式细胞术等多种分析方法分别评估细胞活力、Bax和Bcl-2基因表达、P53蛋白表达和凋亡情况。以人成纤维细胞(Hu02)为阴性对照。此外,采用综合方法进行meta分析。结果:24h后MCF-7细胞活力明显降低(P P P = 0.0012, P)结论:hAFMSCs-CM对MCF-7细胞有凋亡作用;因此,应用hAFMSCs-CM作为治疗试剂,可以抑制乳腺癌细胞的生存能力,诱导细胞凋亡。
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引用次数: 1
Artesunate reduces sepsis-mediated acute lung injury in a SIRT1-dependent manner. 青蒿琥酯以sirt1依赖的方式减少败血症介导的急性肺损伤。
IF 2.6 4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.34172/bi.2023.23585
Zhaohui Liu, Yanli Meng, Yu Miao, Lili Yu, Qiannan Yu

Introduction: Sepsis-mediated acute lung injury (ALI) is a critical clinical condition. Artesunate (AS) is a sesquiterpene lactone endoperoxide that was discovered in Artemisia annua, which is a traditional Chinese herb. AS has a broad set of biological and pharmacological actions; however, its protective effect on lipopolysaccharide (LPS)-induced ALI remains unclear.

Methods: LPS-mediated ALI was induced in rats through bronchial LPS inhalation. Then NR8383 cells were treated with LPS to establish an in vitro model. Further, we administered different AS doses in vivo and in vitro.

Results: AS administration significantly decreased LPS-mediated pulmonary cell death and inhibited pulmonary neutrophil infiltration. Additionally, AS administration increased SIRT1 expression in pulmonary sections. Administration of a biological antagonist or shRNA-induced reduction of SIRT1 expression significantly inhibited the protective effect of AS against LPS-induced cellular injury, pulmonary dysfunction, neutrophil infiltration, and apoptosis. This demonstrates that enhanced SIRT1 expression is crucially involved in the observed protective effects.

Conclusion: Our findings could suggest the use of AS for treating lung disorders through a mechanism involving SIRT1 expression.

简介:败血症介导的急性肺损伤(ALI)是一种危重的临床疾病。青蒿琥酯(AS)是一种从黄花蒿中发现的倍半萜内酯内过氧化物。AS具有广泛的生物和药理作用;然而,其对脂多糖(LPS)诱导的ALI的保护作用尚不清楚。方法:大鼠经支气管吸入LPS诱导ALI。然后用LPS处理NR8383细胞建立体外模型。此外,我们在体内和体外给药不同剂量的AS。结果:AS显著降低lps介导的肺细胞死亡,抑制肺中性粒细胞浸润。此外,AS增加了肺切片中SIRT1的表达。使用生物拮抗剂或shrna诱导的SIRT1表达降低可显著抑制AS对lps诱导的细胞损伤、肺功能障碍、中性粒细胞浸润和凋亡的保护作用。这表明SIRT1表达的增强在观察到的保护作用中起着至关重要的作用。结论:我们的研究结果可能表明,通过与SIRT1表达有关的机制,AS可用于治疗肺部疾病。
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引用次数: 0
Homozygous mutation in CSF1R causes brain abnormalities, neurodegeneration, and dysosteosclerosis (BANDDOS). CSF1R的纯合突变导致大脑异常、神经变性和骨质硬化(BANDDOS)。
IF 2.6 4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.34172/bi.2022.23528
Hossein Daghagh, Haniyeh Rahbar Kafshboran, Yousef Daneshmandpour, Maryam Nasiri Aghdam, Shahrzad Talebian, Jafar Nouri Nojadeh, Hamid Hamzeiy, Saskia Biskup, Ebrahim Sakhinia

Introduction: The CSF1R gene encodes the receptor for colony-stimulating factor-1, the macrophage, and monocyte-specific growth factor. Mutations in this gene cause hereditary diffuse leukoencephalopathy with spheroids (HDLS) with autosomal dominant inheritance and BANDDOS (Brain Abnormalities, Neurodegeneration, and Dysosteosclerosis) with autosomal recessive inheritance.

Methods: Targeted gene sequencing was performed on the genomic DNA samples of the deceased patient and a fetus along with ten healthy members of his family to identify the disease-causing mutation. Bioinformatics tools were used to study the mutation effect on protein function and structure. To predict the effect of the mutation on the protein, various bioinformatics tools were applied.

Results: A novel homozygous variant was identified in the gene CSF1R, c.2498C>T; p.T833M in exon 19, in the index patient and the fetus. Furthermore, some family members were heterozygous for this variant, while they had not any symptoms of the disease. In silico analysis indicated this variant has a detrimental effect on CSF1R. It is conserved among humans and other similar species. The variant is located within the functionally essential PTK domain of the receptor. However, no structural damage was introduced by this substitution.

Conclusion: In conclusion, regarding the inheritance pattern in the family and clinical manifestations in the index patient, we propose that the mentioned variant in the CSF1R gene may cause BANDDOS.

CSF1R基因编码集落刺激因子-1、巨噬细胞和单核细胞特异性生长因子的受体。该基因突变可导致常染色体显性遗传的遗传性弥漫性球状白质脑病(HDLS)和常染色体隐性遗传的BANDDOS(脑异常、神经变性和骨质硬化)。方法:对已故患者和胎儿及其10名健康家庭成员的基因组DNA样本进行靶向基因测序,以确定致病突变。利用生物信息学工具研究突变对蛋白质功能和结构的影响。为了预测突变对蛋白质的影响,应用了各种生物信息学工具。结果:在基因CSF1R中鉴定出一个新的纯合变异,c.2498C>T;在第19外显子p.T833M中,在索引患者和胎儿中。此外,一些家庭成员对这种变异是杂合的,而他们没有任何疾病的症状。硅分析表明该变异对CSF1R有不利影响。它在人类和其他类似物种中是保守的。该变异位于该受体功能必需的PTK结构域内。然而,这种替代没有引起结构损伤。结论:综上所述,结合家族遗传模式和指标患者的临床表现,我们认为上述CSF1R基因变异可能是BANDDOS的病因。
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引用次数: 1
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Bioimpacts
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