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N-3-oxo-hexanoyl-homoserine lactone, a bacterial quorum sensing signal, enhances salt tolerance in Arabidopsis and wheat. 细菌群体感应信号n -3-氧己醇-高丝氨酸内酯增强拟南芥和小麦的耐盐性。
IF 3.4 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2020-03-10 DOI: 10.1186/s40529-020-00283-5
Qian Zhao, Xiang-Yun Yang, Yao Li, Fang Liu, Xiang-Yu Cao, Zhen-Hua Jia, Shui-Shan Song

Background: N-acyl-homoserine lactones (AHLs) are the quorum sensing (QS) signal molecules to coordinate the collective behavior in a population in Gram-negative bacteria. Recent evidences demonstrate their roles in plant growth and defense responses.

Results: In present study, we show that the treatment of plant roots with N-3-oxo-hexanoyl-homoserine lactone (3OC6-HSL), one molecule of AHLs family, resulted in enhanced salt tolerance in Arabidopsis and wheat. We found that the growth inhibition phenotype including root length, shoot length and fresh weight were significantly improved by 3OC6-HSL under salt stress condition. The physiological and biochemical analysis revealed that the contents of chlorophyll and proline were increased and the contents of MDA and Na+ and Na+/K+ ratios were decreased after 3OC6-HSL treatment in Arabidopsis and wheat under salt stress condition. Molecular analysis showed that 3OC6-HSL significantly upregulated the expression of salt-responsive genes including ABA-dependent osmotic stress responsive genes COR15a, RD22, ADH and P5CS1, ABA-independent gene ERD1, and ion-homeostasis regulation genes SOS1, SOS2 and SOS3 in Arabidopsis under salt stress condition.

Conclusions: These results indicated that 3OC6-HSL enhanced plant salt tolerance and ABA-dependent and ABA-independent signal pathways and SOS signaling might be involved in the induction of salt resistance by 3OC6-HSL in plants. Our data provide a new insight into the plant-microbe inter-communication.

背景:n -酰基同丝氨酸内酯(AHLs)是革兰氏阴性菌群体中协调集体行为的群体感应(QS)信号分子。最近的证据表明它们在植物生长和防御反应中起作用。结果:在本研究中,我们发现AHLs家族的一个分子n -3-氧-己醇-高丝氨酸内酯(3OC6-HSL)处理植物根系,可以增强拟南芥和小麦的耐盐性。结果表明,盐胁迫条件下,3OC6-HSL显著改善了水稻的生长抑制表型,包括根长、茎长和鲜重。生理生化分析表明,盐胁迫条件下,3OC6-HSL处理使拟南芥和小麦叶绿素和脯氨酸含量升高,MDA含量降低,Na+和Na+/K+比值降低。分子分析表明,3OC6-HSL显著上调盐胁迫条件下拟南芥中aba依赖性渗透胁迫应答基因COR15a、RD22、ADH和P5CS1、aba非依赖性基因ERD1和离子稳态调节基因SOS1、SOS2和SOS3的表达。结论:这些结果表明3OC6-HSL增强了植物耐盐性,aba依赖和aba不依赖的信号通路和SOS信号通路可能参与了3OC6-HSL诱导植物耐盐的过程。我们的数据为植物与微生物之间的相互交流提供了新的视角。
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引用次数: 21
Correction to: Anti-glycation, anti-hemolysis, and ORAC activities of demethylcurcumin and tetrahydroxycurcumin in vitro and reductions of oxidative stress in D-galactose-induced BALB/c mice in vivo. 更正:去甲基姜黄素和四羟基姜黄素的体外抗糖化、抗溶血和ORAC活性,以及d -半乳糖诱导的BALB/c小鼠体内氧化应激的降低。
IF 3.4 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2020-03-09 DOI: 10.1186/s40529-020-00285-3
Yuh-Hwa Liu, Tai-Lin Lee, Chuan-Hsiao Han, Yi-Shan Lee, Wen-Chi Hou

In the publication of this article (Liu et al. 2019), there was an error in the method and ethics declarations sections which were published with incorrect animal experiment approval number. The error: 'These animal experimental protocols have been reviewed and approved by the Institutional Animal Care and Use Committee of Taipei Medical University (LAC-99-0142).' Should instead read: These animal experimental protocols have been reviewed and approved by the Institutional Animal Care and Use Committee of Taipei Medical University (LAC-2016-0340).

在这篇文章(Liu et al. 2019)的发表中,方法和伦理声明部分出现了错误,动物实验批准号发表错误。错误提示:“这些动物实验方案已经过台北医科大学动物护理和使用委员会(LAC-99-0142)的审查和批准。”这些动物实验方案已由台北医科大学动物护理与使用委员会(LAC-2016-0340)审查并批准。
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引用次数: 0
Functional characterization of NADPH-cytochrome P450 reductase and cinnamic acid 4-hydroxylase encoding genes from Scoparia dulcis L. 茯苓nadph -细胞色素P450还原酶和肉桂酸4-羟化酶编码基因的功能研究。
IF 3.4 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2020-03-02 DOI: 10.1186/s40529-020-00284-4
Yoshimi Yamamura, Ayaka Mabuchi

Background: Most plant cytochrome P450 (P450) proteins need to be supplied with electrons from a redox partner, e.g. an NADPH-cytochrome P450 reductase (CPR), for the activation of oxygen molecules via heme. CPR is a flavoprotein with an N-terminal transmembrane domain, which transfers electrons from NADPH to the P450 via coenzymes flavin adenine dinucleotide and flavin mononucleotide.

Results: In this study, a novel CPR (SdCPR) was isolated from a tropical medicinal plant Scoparia dulcis L. The deduced amino acid of SdCPR showed high homology of > 76% with CPR from higher plants and belonged to the class II CPRs of dicots. Recombinant SdCPR protein reduced cytochrome c, ferricyanide (K3Fe(CN)6), and dichlorophenolindophenol in an NADPH-dependent manner. To elucidate the P450 monooxygenase activity of SdCPR, we isolated a cinnamic acid 4-hydroxylase (SdC4H, CYP73A111) gene from S. dulcis. Biochemical characterization of SdCPR/SdC4H demonstrated that SdCPR supports the oxidation step of SdC4H. Real-time qPCR results showed that expression levels of SdCPR and SdC4H were inducible by mechanical wounding treatment and phytohormone elicitation (methyl jasmonate, salicylic acid), which were consistent with the results of promotor analyses.

Conclusions: Our results showed that the SdCPR and SdC4H are related to defense reactions, including the biosynthesis of secondary metabolites.

背景:大多数植物细胞色素P450 (P450)蛋白需要由氧化还原伙伴提供电子,例如nadph -细胞色素P450还原酶(CPR),通过血红素激活氧分子。CPR是一种具有n端跨膜结构域的黄素蛋白,它通过辅酶黄素腺嘌呤二核苷酸和黄素单核苷酸将电子从NADPH转移到P450。结果:从热带药用植物东Scoparia dulcis L.中分离到一种新的CPR (SdCPR),其氨基酸与高等植物的CPR同源性> 76%,属于薯蓣属II类CPR。重组SdCPR蛋白以nadph依赖的方式还原细胞色素c、铁氰化物(K3Fe(CN)6)和二氯酚吲哚酚。为了研究肉桂酸羟化酶的P450单加氧酶活性,我们从肉桂酸中分离出一个肉桂酸4-羟化酶(SdC4H, CYP73A111)基因。SdCPR/SdC4H的生化表征表明,SdCPR支持SdC4H的氧化步骤。Real-time qPCR结果显示,机械损伤处理和植物激素(茉莉酸甲酯、水杨酸)诱导均可诱导SdCPR和SdC4H的表达水平,这与启动子分析结果一致。结论:我们的研究结果表明SdCPR和SdC4H与防御反应有关,包括次生代谢物的生物合成。
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引用次数: 3
Silicified bulliform cells of Poaceae: morphological characteristics that distinguish subfamilies. 豆科硅化球状细胞:区分亚科的形态学特征。
IF 3.4 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2020-03-02 DOI: 10.1186/s40529-020-0282-x
Iju Chen, Kuang-Ti Li, Cheng-Hwa Tsang

Background: Grass phytoliths are the most common phytoliths in sediments; recognizing grass phytolith types is important when using phytoliths as a tool to reconstruct paleoenvironments. Grass bulliform cells may be silicified to large size parallelepipedal or cuneiform shaped phytoliths, which were often regarded as of no taxonomic value. However, studies in eastern Asia had identified several forms of grass bulliform phytoliths, including rice bulliform phytolith, a phytolith type frequently used to track the history of rice domestication. Identification with a higher level of taxonomic resolution is possible, yet a systematic investigation on morphology of Poaceae bulliform phytoliths is lacking. We aimed at providing a morphological description of bulliform phytoliths of Poaceae from Taiwan based on morphometric measurements in anatomical aspect. The results are important references for paleo-ecological studies.

Result: The morphology of grass bulliform phytoliths is usually consistent within a subfamily; the end profile is relatively rectangular in Panicoideae and Micrairoideae, whereas cuneiform to nearly circular in Oryzoideae, Bambusoideae, Arundinoideae, and Chloridoideae. Bulliform phytoliths were seldom observed in Pooideae. Certain morphotypes are limited to plants growing in specific environments. For example, large, thin, and pointed bulliform phytoliths are associated with wet habitat; Chloridoideae types are mostly from C4 plants occupying open arid places.

Conclusion: Grass bulliform phytoliths can be identified at least to the subfamily level, and several forms were distinguished within large subfamilies. Previously un-reported silicified cell types, i.e., arm cells and fusoids, and two special trichome phytolith types associated with bulliform phytoliths, were described. Morphometric methods were great tools for delimiting morphotypes; with refined morphological classification the association between forms and habit/habitats was revealed. The knowledge provides new ways to interpret phytolith assemblage data, and it is especially useful when the sediments are enriched in large blocky phytoliths.

背景:禾本科植物岩是沉积物中最常见的植物岩;识别禾草植物岩类型是利用植物岩重建古环境的重要工具。禾草球状细胞可能硅化成大尺寸的平行六面体或楔形植物岩,这些植物岩通常被认为没有分类价值。然而,在东亚的研究已经确定了几种形式的草球状植物岩,包括水稻球状植物岩,这是一种经常用于追踪水稻驯化历史的植物岩类型。以较高的分类学分辨率进行鉴定是可能的,但对豆科球状植物岩的形态还缺乏系统的研究。摘要从解剖学角度对台湾禾本科植物的球状植物岩进行形态学描述。研究结果对古生态学研究具有重要的参考价值。结果:草球状植物岩的形态在一个亚科内通常是一致的;Panicoideae科和micoroideae科的末端轮廓相对呈矩形,而Oryzoideae科、Bambusoideae科、Arundinoideae科和Chloridoideae科的末端轮廓呈楔形或近圆形。球状植物岩在池亚科中少见。某些形态仅限于在特定环境中生长的植物。例如,大的、薄的和尖的球状植物岩与潮湿的栖息地有关;蠓科类型主要来自于开阔干旱地区的C4植物。结论:草球状植物岩至少在亚科水平上可以识别,并在大亚科中区分出几种类型。先前未报道的硅化细胞类型,即臂细胞和梭状体,以及与球状植物岩相关的两种特殊的毛状植物岩类型,被描述。形态计量学方法是划分形态类型的重要工具;通过精细的形态分类,揭示了形态与习性/生境之间的联系。这些知识为解释植物岩组合数据提供了新的途径,当沉积物富含大块块状植物岩时尤其有用。
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引用次数: 15
Ultrastructural changes during the symbiotic seed germination of Gastrodia elata with fungi, with emphasis on the fungal colonization region. 天麻与真菌共生种子萌发过程中的超微结构变化,重点是真菌定殖区。
IF 3.4 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2020-02-12 DOI: 10.1186/s40529-019-0280-z
Yuan-Yuan Li, Shun-Xing Guo, Yung-I Lee

Background: Gastrodia elata is a fully mycoheterotrophic orchid and has long been used in traditional Chinese medicine. The life cycle of G. elata requires an association with two different fungi-Mycena for seed germination and Armillaria for tuber growth. The association with Armillaria is representative of the phytophagous type of orchid mycorrhiza: the intracellular hyphae are lysed without forming condensed pelotons. However, whether the association with Mycena during seed germination belongs to the same type of orchid mycorrhiza is unknown.

Results: Histological and ultrastructural studies revealed several notable features in different developmental stages. First, a thickened cell wall with papillae-like structures appeared during fungal penetration in the suspensor end cell, epidermal cells and cortical cells of germinating embryos. In addition, the formation of two distinctive cell types in the colonized region of a protocorm (i.e., the passage canal cell filled with actively growing fungal hyphae) can be observed in the epidermal cell, and the distinctive digestion cell with a dense cytoplasm appears in the cortex. Finally, within the digestion cell, numerous electron-dense tubules form a radial system and attach to degrading fungal hyphae. The fungal hyphae appear to be digested through endocytosis.

Conclusions: The present study provides important structural evidence for the phytophagous type of orchid mycorrhiza in the symbiotic germination of G. elata with Mycena. This case demonstrates a particular nutrient transfer network between G. elata and its litter-decaying fungal partner.

背景:天麻(Gastrodia elata)是一种全霉菌兰科植物,长期以来一直被用于传统中药中。天麻的生命周期需要与两种不同的真菌结合--Mycena(用于种子发芽)和Armillaria(用于块茎生长)。与臂孢菌的结合是兰花菌根中植物吞噬型菌根的代表:胞内菌丝被裂解,而不形成凝结的颗粒。然而,在种子萌发过程中与霉菌的结合是否属于兰花菌根的同一类型尚不清楚:组织学和超微结构研究显示了不同发育阶段的几个显著特点。首先,在真菌穿透发芽胚的悬丝末端细胞、表皮细胞和皮层细胞时,细胞壁增厚并出现乳头状结构。此外,在原球茎的定殖区(即充满活跃生长的真菌菌丝的通道细胞),可以观察到表皮细胞中形成了两种独特的细胞类型,而在皮层细胞中则出现了具有致密细胞质的独特消化细胞。最后,在消化细胞内,许多电子致密小管形成一个放射状系统,并附着在降解的真菌菌丝上。真菌菌丝似乎是通过内吞作用被消化的:结论:本研究提供了重要的结构证据,证明兰花菌根的植食性类型存在于 G. elata 与真菌的共生发芽过程中。本研究为兰花菌根的植食性共生萌发提供了重要的结构证据,证明了兰花菌根与其垃圾腐生真菌伙伴之间的特殊营养传递网络。
{"title":"Ultrastructural changes during the symbiotic seed germination of Gastrodia elata with fungi, with emphasis on the fungal colonization region.","authors":"Yuan-Yuan Li, Shun-Xing Guo, Yung-I Lee","doi":"10.1186/s40529-019-0280-z","DOIUrl":"10.1186/s40529-019-0280-z","url":null,"abstract":"<p><strong>Background: </strong>Gastrodia elata is a fully mycoheterotrophic orchid and has long been used in traditional Chinese medicine. The life cycle of G. elata requires an association with two different fungi-Mycena for seed germination and Armillaria for tuber growth. The association with Armillaria is representative of the phytophagous type of orchid mycorrhiza: the intracellular hyphae are lysed without forming condensed pelotons. However, whether the association with Mycena during seed germination belongs to the same type of orchid mycorrhiza is unknown.</p><p><strong>Results: </strong>Histological and ultrastructural studies revealed several notable features in different developmental stages. First, a thickened cell wall with papillae-like structures appeared during fungal penetration in the suspensor end cell, epidermal cells and cortical cells of germinating embryos. In addition, the formation of two distinctive cell types in the colonized region of a protocorm (i.e., the passage canal cell filled with actively growing fungal hyphae) can be observed in the epidermal cell, and the distinctive digestion cell with a dense cytoplasm appears in the cortex. Finally, within the digestion cell, numerous electron-dense tubules form a radial system and attach to degrading fungal hyphae. The fungal hyphae appear to be digested through endocytosis.</p><p><strong>Conclusions: </strong>The present study provides important structural evidence for the phytophagous type of orchid mycorrhiza in the symbiotic germination of G. elata with Mycena. This case demonstrates a particular nutrient transfer network between G. elata and its litter-decaying fungal partner.</p>","PeriodicalId":48844,"journal":{"name":"Botanical Studies","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2020-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7016048/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37637631","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Vessel elements of two thelypteroid ferns-part I. 两种蕨类植物的叶脉元素--第一部分。
IF 3.4 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2020-01-27 DOI: 10.1186/s40529-020-0281-y
Swastika Laskar, Utsha Ghoshal, Kakali Sen

Background: Hydraulically efficient xylem was evolved in the vascular plants as an apomorphy of the group. Main xylem components involved in water conduction are tracheid and vessel. Vessels, in which two ends are perforated, constituted major evolutionary innovation within vascular plants, presumably providing more efficient solute conduction. Not all vascular plants have vessels. In pteridophytes vessels are present only in seven genera. The contention lies regarding the presence and distribution of vessel in pteridophytes are the impulsive force of this investigation.

Methods: Tracheary elements are isolated following the standard maceration technique, then hand-razor cut longisections are passed through the aqueous alcohol grades and air-dried samples are placed on stub, sputter coated with gold and examined with SEM.

Results: Two thelypteroid ferns viz. Ampelopteris prolifera (Retz.) Copel. and Thelypteris interrupta (Willd.) K. Iwats. are having vessel elements in root, rhizome, stipe, rachis, primary vein/costa, root-rhizome and rhizome-petiole junction i.e. through entire vascular connection of the plant body though the vessel network is interrupted and joined with parenchyma at the end in some places. Presence of vessel elements in the costa of pteridophytic taxa is first time reported by this study. Vessel end-walls are obliquely placed (root, rhizome, and stipe) but oblique to horizontal orientation is noticed in the primary vein/costa. End-walls are with simple, intermediate and compound perforation plates observed through SEM imaging as well as with tissue specific stain. Studied taxa are grown either in terrestrial microclimate of two contrasting environments i.e. sun and shade (A. prolifera) or in open swampy land (T. interrupta) with moderate to highly disturbed places as rapid proliferating populations showing interpopulation variations of tracheary elements length-width(s) and vessel end-wall length-width(s).

Conclusion: Vessel elements are present throughout the entire vascular connections of the plant body of A. prolifera (Retz.) Copel. and T. interrupta (Willd.) K. Iwats. Interpopulation variation of tracheary elements length-width(s) and vessel end-wall length width(s) are noticed. Till date only seven genera of pteridophytes are reported for the presence of vessel and these two genera are the new addition with the previous.

背景:水力高效木质部是维管植物进化而来的,是维管植物群落的一种特殊形态。木质部中参与水分传导的主要成分是气管和血管。血管两端穿孔,是维管植物在进化过程中的重大创新,可能提供了更高效的溶质传导。并非所有维管植物都有血管。在翼手目植物中,只有七个属有血管。关于翼手目植物中血管的存在和分布的争论是本次调查的动力:方法:按照标准浸渍技术分离气管元件,然后将手工剃刀切下的长切片通过水醇等级,将风干的样品放在柱子上,溅射镀金并用扫描电镜检查:结果:两种蕨类植物,即 Ampelopteris prolifera (Retz.) Copel.和 Thelypteris interrupta (Willd.) K. Iwats.的根、根茎、柄、轴、主脉/肋、根-根茎和根茎-叶柄交界处都有血管元素,即贯穿植物体的整个维管连接,尽管血管网络在某些地方中断,并在末端与实质连接。本研究首次报道了翼手目类群的叶缘存在血管元件。血管的端壁呈斜向排列(根、根茎和柄),但在主脉/脊柱中则呈斜向水平排列。通过扫描电子显微镜(SEM)成像和组织特异性染色观察到的端壁有单孔、中间孔和复合孔板。所研究的分类群生长在两种截然不同的陆地小气候环境中,即阳光和阴凉处(A. prolifera),或生长在开阔的沼泽地中(T. interrupta),在中度到高度受干扰的地方快速增殖,表现出气管元素长度-宽度和血管内壁长度-宽度的种群间差异:A.prolifera(Retz.)Copel.和 T.interrupta(Willd.)K.Iwats.植物体的整个维管连接中都有血管元件。注意到气管元素长宽和血管端壁长宽的种间差异。迄今为止,仅有 7 个属的翼手目植物被报道存在血管,而这两个属是新增加的属。
{"title":"Vessel elements of two thelypteroid ferns-part I.","authors":"Swastika Laskar, Utsha Ghoshal, Kakali Sen","doi":"10.1186/s40529-020-0281-y","DOIUrl":"10.1186/s40529-020-0281-y","url":null,"abstract":"<p><strong>Background: </strong>Hydraulically efficient xylem was evolved in the vascular plants as an apomorphy of the group. Main xylem components involved in water conduction are tracheid and vessel. Vessels, in which two ends are perforated, constituted major evolutionary innovation within vascular plants, presumably providing more efficient solute conduction. Not all vascular plants have vessels. In pteridophytes vessels are present only in seven genera. The contention lies regarding the presence and distribution of vessel in pteridophytes are the impulsive force of this investigation.</p><p><strong>Methods: </strong>Tracheary elements are isolated following the standard maceration technique, then hand-razor cut longisections are passed through the aqueous alcohol grades and air-dried samples are placed on stub, sputter coated with gold and examined with SEM.</p><p><strong>Results: </strong>Two thelypteroid ferns viz. Ampelopteris prolifera (Retz.) Copel. and Thelypteris interrupta (Willd.) K. Iwats. are having vessel elements in root, rhizome, stipe, rachis, primary vein/costa, root-rhizome and rhizome-petiole junction i.e. through entire vascular connection of the plant body though the vessel network is interrupted and joined with parenchyma at the end in some places. Presence of vessel elements in the costa of pteridophytic taxa is first time reported by this study. Vessel end-walls are obliquely placed (root, rhizome, and stipe) but oblique to horizontal orientation is noticed in the primary vein/costa. End-walls are with simple, intermediate and compound perforation plates observed through SEM imaging as well as with tissue specific stain. Studied taxa are grown either in terrestrial microclimate of two contrasting environments i.e. sun and shade (A. prolifera) or in open swampy land (T. interrupta) with moderate to highly disturbed places as rapid proliferating populations showing interpopulation variations of tracheary elements length-width(s) and vessel end-wall length-width(s).</p><p><strong>Conclusion: </strong>Vessel elements are present throughout the entire vascular connections of the plant body of A. prolifera (Retz.) Copel. and T. interrupta (Willd.) K. Iwats. Interpopulation variation of tracheary elements length-width(s) and vessel end-wall length width(s) are noticed. Till date only seven genera of pteridophytes are reported for the presence of vessel and these two genera are the new addition with the previous.</p>","PeriodicalId":48844,"journal":{"name":"Botanical Studies","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2020-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6985324/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37583946","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Effect of different mycobionts on symbiotic germination and seedling growth of Dendrobium officinale, an important medicinal orchid. 不同霉菌对重要药用兰科植物 officinale 铁皮石斛共生萌芽和幼苗生长的影响
IF 3.4 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2020-01-27 DOI: 10.1186/s40529-019-0278-6
Ying Zhang, Yuan-Yuan Li, Xiao-Mei Chen, Shun-Xing Guo, Yung-I Lee

Background: Orchids maintain a symbiotic relationship with mycorrhizal fungi in the lifecycle. Previous reports indicated that diverse mycobionts may have different roles during orchid growth and development. Although various mycorrhizal fungi have been isolated from Dendrobium roots and protocorms, little is known about their specific effects on seed germination and seedling growth. To understand the specific role of isolated fungal strains (i.e., Tulasnella and Sebacina), we used symbiotic culture to compare the effect of 6 fungal strains on seed germination and seedling growth of Dendrobium officinale, an important Chinese medicinal orchid.

Results: In symbiotic germination tests, 6 fungal strains (4 Tulasnella strains and 2 Sebacina strains) promoted seed germination with different efficiencies. Seeds inoculated with Tulasnella strains S6 and S7 conferred higher germination percentage and faster protocorm development than other fungal strains. In symbiotic cultures, seedlings inoculated with Sebacina strain S3 had optimal fresh and dry matter yield. Also, Tulasnella strains S6 and S7 promoted seedling growth with good fresh and dry matter yield. Sebacina strain S2 inoculation greatly enhanced root and tiller production and the content of total crude polysaccharides, although seedlings were smaller with less fresh and dry matter yield than other seedlings.

Conclusions: Tulasnella and Sebacina strains could promote seed germination and seedling growth of D. officinale with different efficiencies. Our results suggest a non-specific mycorrhizal association and development-dependent preference. Our data provide the basic knowledge for use of different fungal strains in conservation and/or production practices of D. officinale.

背景:兰花在生命周期中与菌根真菌保持着共生关系。以前的报道表明,不同的菌根真菌在兰花的生长和发育过程中可能有不同的作用。虽然已经从铁皮石斛的根部和原球茎中分离出了各种菌根真菌,但人们对它们对种子萌发和幼苗生长的具体影响知之甚少。为了了解分离出的真菌菌株(即 Tulasnella 和 Sebacina)的具体作用,我们利用共生培养法比较了 6 种真菌菌株对重要中药兰科植物铁皮石斛种子萌发和幼苗生长的影响:结果:在共生萌发试验中,6个真菌菌株(4个Tulasnella菌株和2个Sebacina菌株)对种子萌发的促进效率不同。与其他真菌菌株相比,接种图拉斯菌菌株 S6 和 S7 的种子发芽率更高,原球茎发育更快。在共生培养中,接种 Sebacina 菌株 S3 的幼苗具有最佳的新鲜和干物质产量。此外,Tulasnella 菌株 S6 和 S7 也能促进幼苗生长,并获得良好的新鲜和干物质产量。接种 Sebacina 菌株 S2 大大提高了根和分蘖的产量以及总粗多糖的含量,但秧苗较小,鲜、干物质产量低于其他秧苗:结论:Tulasnella 和 Sebacina 菌株能以不同的效率促进 D. officinale 的种子萌发和幼苗生长。我们的研究结果表明,菌根具有非特异性关联和依赖于生长发育的偏好。我们的数据为在 D. officinale 的保护和/或生产实践中使用不同的真菌菌株提供了基础知识。
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引用次数: 0
Morphological and genetic characteristics of F1 hybrids introgressed from Brassica napus to B. rapa in Taiwan. 台湾甘蓝型油菜向油菜杂交F1的形态与遗传特征。
IF 3.4 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2020-01-21 DOI: 10.1186/s40529-019-0279-5
Yuan-Kai Tu, Han-Wei Chen, Kuang-Yu Tseng, Yen-Chun Lin, Bo-Jein Kuo

Background: Unintentional introgression from genetically modified (GM) oilseed rape (Brassica napus) to a relative is inevitable in the open field. A feasible and practical strategy for restricting the spread of GM offspring is to set a reasonable isolated distance between GM B. napus and the relatives. To define the isolated distance, a pollen donor/recipient pair is a prerequisite to conducting the field trial of pollen flow. However, because the cultivation of GM B. napus is prohibited in Taiwan, it is difficult to obtain relevant information. Thus, this study explored the morphological and genetic characteristics of five varieties of B. napus (donor), three varieties of B. rapa (recipient), and the 15 corresponding F1 hybrids, aiming to construct phenotypic data and genetic variation data and to select the most appropriate pollen donor/recipient for future field trials of pollen flow.

Results: The genome size of all F1 hybrids estimated using flow cytometry showed intermediate DNA content between B. napus and B. rapa varieties. Most of the F1 hybrids had intermediate plant height and blooming period, and the rosette leaves type and colors resembled those of B. napus varieties. The results of sequence-related amplified polymorphism (SRAP) showed an average of 9.52 bands per primer combination and 67.87 polymorphic bands among the F1 hybrid population. Similarity and cluster analyses revealed higher similarity between F1 hybrids and B. napus varieties than between F1 hybrids and B. rapa varieties. Furthermore, we identified a specific 1100-bp band (LOC106302894) in F1 hybrids and B. napus varieties but not in B. rapa varieties.

Conclusions: The rosette leaves and the DNA marker LOC106302894 observed in F1 hybrids are consistent phenotypic and genetic characteristics that can be used to identify the presence of unintentional hybridization from B. napus to B. rapa in Taiwan. Due to the prohibition of GM crop cultivation, the hybridization system of non-GM Brassica species in this study can be utilized as a mimic scheme to conduct pollen flow trials, thus facilitating the determination of the proper isolated distance.

背景:转基因油菜(Brassica napus)无意中向其亲缘种渗透是在开阔田地中不可避免的。在甘蓝型甘蓝型油菜与近缘种之间设置合理的隔离距离是限制转基因后代传播的一种切实可行的策略。为了确定隔离距离,花粉供体/受体对是进行花粉流田间试验的先决条件。然而,由于台湾禁止种植转基因甘蓝型油菜,因此很难获得相关信息。因此,本研究对5个甘蓝型油菜品种(供体)、3个甘蓝型油菜品种(受体)及其15个F1杂交品种的形态和遗传特征进行了研究,旨在构建表型数据和遗传变异数据,为今后花粉流田间试验选择最合适的花粉供体/受体。结果:用流式细胞术估计的F1杂交种的基因组大小显示,DNA含量介于甘蓝型油菜和油菜品种之间。大多数F1杂交种株高和花期中等,莲座叶的类型和颜色与甘蓝型相近。序列相关扩增多态性(SRAP)分析结果显示,每个引物组合平均有9.52条多态性带,F1杂交群体平均有67.87条多态性带。相似分析和聚类分析结果表明,F1杂交种与油菜品种之间的相似性高于F1杂交种与油菜品种之间的相似性。此外,我们在F1杂交种和油菜品种中发现了一个特异的1100 bp的条带(LOC106302894),而油菜品种中没有。结论:在F1杂交品种中观察到的莲座叶和DNA标记LOC106302894具有一致的表型和遗传特征,可用于鉴定台湾地区甘蓝型油菜与油菜之间存在非故意杂交。由于禁止转基因作物种植,本研究非转基因芸苔属植物杂交系统可作为模拟方案进行花粉流试验,便于确定适宜的隔离距离。
{"title":"Morphological and genetic characteristics of F<sub>1</sub> hybrids introgressed from Brassica napus to B. rapa in Taiwan.","authors":"Yuan-Kai Tu,&nbsp;Han-Wei Chen,&nbsp;Kuang-Yu Tseng,&nbsp;Yen-Chun Lin,&nbsp;Bo-Jein Kuo","doi":"10.1186/s40529-019-0279-5","DOIUrl":"https://doi.org/10.1186/s40529-019-0279-5","url":null,"abstract":"<p><strong>Background: </strong>Unintentional introgression from genetically modified (GM) oilseed rape (Brassica napus) to a relative is inevitable in the open field. A feasible and practical strategy for restricting the spread of GM offspring is to set a reasonable isolated distance between GM B. napus and the relatives. To define the isolated distance, a pollen donor/recipient pair is a prerequisite to conducting the field trial of pollen flow. However, because the cultivation of GM B. napus is prohibited in Taiwan, it is difficult to obtain relevant information. Thus, this study explored the morphological and genetic characteristics of five varieties of B. napus (donor), three varieties of B. rapa (recipient), and the 15 corresponding F<sub>1</sub> hybrids, aiming to construct phenotypic data and genetic variation data and to select the most appropriate pollen donor/recipient for future field trials of pollen flow.</p><p><strong>Results: </strong>The genome size of all F<sub>1</sub> hybrids estimated using flow cytometry showed intermediate DNA content between B. napus and B. rapa varieties. Most of the F<sub>1</sub> hybrids had intermediate plant height and blooming period, and the rosette leaves type and colors resembled those of B. napus varieties. The results of sequence-related amplified polymorphism (SRAP) showed an average of 9.52 bands per primer combination and 67.87 polymorphic bands among the F<sub>1</sub> hybrid population. Similarity and cluster analyses revealed higher similarity between F<sub>1</sub> hybrids and B. napus varieties than between F<sub>1</sub> hybrids and B. rapa varieties. Furthermore, we identified a specific 1100-bp band (LOC106302894) in F<sub>1</sub> hybrids and B. napus varieties but not in B. rapa varieties.</p><p><strong>Conclusions: </strong>The rosette leaves and the DNA marker LOC106302894 observed in F<sub>1</sub> hybrids are consistent phenotypic and genetic characteristics that can be used to identify the presence of unintentional hybridization from B. napus to B. rapa in Taiwan. Due to the prohibition of GM crop cultivation, the hybridization system of non-GM Brassica species in this study can be utilized as a mimic scheme to conduct pollen flow trials, thus facilitating the determination of the proper isolated distance.</p>","PeriodicalId":48844,"journal":{"name":"Botanical Studies","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2020-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s40529-019-0279-5","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37565367","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 9
Bayesian inference of environmental effects on seaweed production in Japan via a production-environmental suitability model. 通过生产环境适宜性模型对日本海藻生产的环境影响进行贝叶斯推断。
IF 3.4 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2019-02-01 DOI: 10.1186/s40529-018-0250-x
Hungyen Chen

Background: Both natural and human-induced disturbances are commonly responsible for an overall decrease of the world's seaweed. Along Japan's coastal areas, edible seaweed production has been decreasing for decades. In this study, a production-environmental suitability model to estimate the impacts of environmental factors on seaweed production was developed. The developed model not only estimates human-induced disturbances but also quantifies the impacts of environmental factors responsible for the decline of annual seaweed production. The model estimated the temporal variation in human-induced disturbances and the effects of environmental factors (i.e., rainfall, CO2 concentrations, temperature, typhoons, solar radiation, water nutrient levels, and water quality) on edible seaweeds in Japan from 1985 to 2012.

Results: The environmental suitability for seaweed production in Japan was about 4.6 times greater in 1992 than in 2011, meanwhile as a result of human activities, human-induced disturbances of seaweed increased at a rate of 4.9 times faster during the period of 1998-2012 than the period of 1985-1997. The ratio of decreased production to decreased environmental suitability for seaweed production in Japan increased by 15.2% during the study years, which means that seaweed production has become more sensitive to environmental disturbances, including climatic factors and human activities in 1998-2012.

Conclusions: The results are novel in demonstrating temporal variations in the level of environmental suitability to seaweed production by using a simple mathematical model. The production-environmental suitability model successfully predicted seaweed production by reflecting the 28-year temporal variation of the observed seaweed production in Japan.

背景:自然和人类引起的干扰通常是世界海藻总量减少的原因。几十年来,日本沿海地区的食用海藻产量一直在下降。在本研究中,建立了一个生产环境适宜性模型来估计环境因素对海藻生产的影响。所开发的模型不仅估计了人为干扰,还量化了导致年度海藻产量下降的环境因素的影响。该模型估计了1985年至2012年人类干扰的时间变化以及环境因素(即降雨量、二氧化碳浓度、温度、台风、太阳辐射、水营养水平和水质)对日本可食用海藻的影响。结果:1992年日本海藻生产的环境适宜性约为2011年的4.6倍,同时,由于人类活动的影响,人类对海藻的干扰在1998-2012年期间的增长速度是1985-1997年的4.9倍。在研究期间,日本海藻生产的产量下降与环境适应性下降的比例增加了15.2%,这意味着海藻生产对环境干扰变得更加敏感,包括1998-2012年的气候因素和人类活动。结论:通过使用一个简单的数学模型,这些结果在证明环境对海藻生产的适宜性水平的时间变化方面是新颖的。生产环境适宜性模型通过反映日本观测到的海藻产量28年的时间变化,成功地预测了海藻产量。
{"title":"Bayesian inference of environmental effects on seaweed production in Japan via a production-environmental suitability model.","authors":"Hungyen Chen","doi":"10.1186/s40529-018-0250-x","DOIUrl":"10.1186/s40529-018-0250-x","url":null,"abstract":"<p><strong>Background: </strong>Both natural and human-induced disturbances are commonly responsible for an overall decrease of the world's seaweed. Along Japan's coastal areas, edible seaweed production has been decreasing for decades. In this study, a production-environmental suitability model to estimate the impacts of environmental factors on seaweed production was developed. The developed model not only estimates human-induced disturbances but also quantifies the impacts of environmental factors responsible for the decline of annual seaweed production. The model estimated the temporal variation in human-induced disturbances and the effects of environmental factors (i.e., rainfall, CO<sub>2</sub> concentrations, temperature, typhoons, solar radiation, water nutrient levels, and water quality) on edible seaweeds in Japan from 1985 to 2012.</p><p><strong>Results: </strong>The environmental suitability for seaweed production in Japan was about 4.6 times greater in 1992 than in 2011, meanwhile as a result of human activities, human-induced disturbances of seaweed increased at a rate of 4.9 times faster during the period of 1998-2012 than the period of 1985-1997. The ratio of decreased production to decreased environmental suitability for seaweed production in Japan increased by 15.2% during the study years, which means that seaweed production has become more sensitive to environmental disturbances, including climatic factors and human activities in 1998-2012.</p><p><strong>Conclusions: </strong>The results are novel in demonstrating temporal variations in the level of environmental suitability to seaweed production by using a simple mathematical model. The production-environmental suitability model successfully predicted seaweed production by reflecting the 28-year temporal variation of the observed seaweed production in Japan.</p>","PeriodicalId":48844,"journal":{"name":"Botanical Studies","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2019-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s40529-018-0250-x","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36908075","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 6
Effective Agrobacterium-mediated transformation protocols for callus and roots of halophyte ice plant (Mesembryanthemum crystallinum). 有效的农杆菌介导的盐生冰生植物愈伤组织和根的转化方案。
IF 3.4 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2019-01-07 DOI: 10.1186/s40529-018-0249-3
Hau-Hsuan Hwang, Chih-Hao Wang, Hsiao-Huei Chen, Jia-Fang Ho, Shin-Fei Chi, Fan-Chen Huang, Hungchen Emilie Yen

Background: Ice plant (Mesembryanthemum crystallinum L.) is a model plant for studying salt-tolerant mechanisms in higher plants. Many salt stress-responsive ice plant genes have been identified with molecular and biochemical approaches. However, no further functional characterization of these genes in host plant due to lack of easy and effective transformation protocols.

Results: To establish efficient transformation system of ice plants, three types of ice plant materials, hypocotyl-derived callus, aseptically-grown seedlings and pot-grown juvenile plants, were used to develop Agrobacterium-mediated transformation protocols. The highest transient transformation efficiency was with 5-day-old ice plant callus co-incubated with an Agrobacterium tumefaciens at 2.5 × 109 cells mL-1 for 48 h. The 3-day-old ice plant seedlings with root tip removed were successfully infected with A. tumefaciens or A. rhizogenes, and obtained 85% and 33-100% transient transformation rates, respectively. The transient transformation assays in ice plant callus and seedlings demonstrated that the concentrations of Agrobacteria, the durations of co-incubation time, and the plant growth stages were three important factors affecting the transient transformation efficiencies. Additionally, pot-grown juvenile plants were syringe-injected with two A. rhizogenes strains A8196 and NCPPB 1855, to establish transformed roots. After infections, ice plants were grown hydroponically and showed GUS expressions in transformed roots for 8 consecutive weeks.

Conclusions: Our Agrobacterium-mediated transformation protocols utilized hypocotyl-derived callus and seedlings as plant materials, which can be easily obtained in large quantity. The average successful transient transformation rates were about 2.4-3.0% with callus and 33.3-100.0% with seedlings. We also developed a rapid and efficient protocol to generate transgenic roots by A. rhizogenes infections without laborious and challenging tissue culture techniques. This protocol to establish composite ice plant system demonstrates excellent improvements in efficiency, efficacy, and ease of use over previous ice plant transformation protocols. These Agrobacterium-mediated transformation protocols can be versatile and efficient tools for exploring gene functions at cellular and organ levels of ice plants.

背景:冰生植物是研究高等植物耐盐机制的模式植物。许多对盐胁迫有反应的冰植物基因已经通过分子和生物化学方法鉴定出来。然而,由于缺乏简单有效的转化方案,这些基因在寄主植物中没有进一步的功能表征。结果:为了建立高效的冰原植物转化体系,使用三种类型的冰原材料,即下胚轴来源的愈伤组织、无菌培养的幼苗和盆栽的幼苗,制定了农杆菌介导的转化方案。最高的瞬时转化效率是在2.5℃下与根癌土壤杆菌共孵育5天龄的冰植物愈伤组织 × 109个细胞mL-1,持续48小时。用根癌A.tumefaciens或根癌A.rhizogenes成功地感染了去除根尖的3天龄冰苗,获得了85%和33-100%的瞬时转化率。对冰植物愈伤组织和幼苗的瞬时转化试验表明,土壤杆菌浓度、共孵育时间和植株生长阶段是影响瞬时转化效率的三个重要因素。此外,将盆栽幼株用注射器注射两株生根A.rhizogenes菌株A8196和NCPPB1855,以建立转化根。感染后,水培冰植物,并在转化根中连续8周显示GUS表达。结论:我们的农杆菌介导的转化方案利用下胚轴来源的愈伤组织和幼苗作为植物材料,可以容易地大量获得。愈伤组织瞬时转化率平均为2.4-3.0%,幼苗瞬时转化率为33.3-100.0%。我们还开发了一种快速有效的方案,通过a.rhizogenes感染产生转基因根,而无需费力和具有挑战性的组织培养技术。与以前的制冰厂改造方案相比,建立复合制冰厂系统的方案在效率、功效和易用性方面表现出了出色的改进。这些农杆菌介导的转化方案可以成为探索冰植物细胞和器官水平基因功能的多功能和有效工具。
{"title":"Effective Agrobacterium-mediated transformation protocols for callus and roots of halophyte ice plant (Mesembryanthemum crystallinum).","authors":"Hau-Hsuan Hwang,&nbsp;Chih-Hao Wang,&nbsp;Hsiao-Huei Chen,&nbsp;Jia-Fang Ho,&nbsp;Shin-Fei Chi,&nbsp;Fan-Chen Huang,&nbsp;Hungchen Emilie Yen","doi":"10.1186/s40529-018-0249-3","DOIUrl":"10.1186/s40529-018-0249-3","url":null,"abstract":"<p><strong>Background: </strong>Ice plant (Mesembryanthemum crystallinum L.) is a model plant for studying salt-tolerant mechanisms in higher plants. Many salt stress-responsive ice plant genes have been identified with molecular and biochemical approaches. However, no further functional characterization of these genes in host plant due to lack of easy and effective transformation protocols.</p><p><strong>Results: </strong>To establish efficient transformation system of ice plants, three types of ice plant materials, hypocotyl-derived callus, aseptically-grown seedlings and pot-grown juvenile plants, were used to develop Agrobacterium-mediated transformation protocols. The highest transient transformation efficiency was with 5-day-old ice plant callus co-incubated with an Agrobacterium tumefaciens at 2.5 × 10<sup>9</sup> cells mL<sup>-1</sup> for 48 h. The 3-day-old ice plant seedlings with root tip removed were successfully infected with A. tumefaciens or A. rhizogenes, and obtained 85% and 33-100% transient transformation rates, respectively. The transient transformation assays in ice plant callus and seedlings demonstrated that the concentrations of Agrobacteria, the durations of co-incubation time, and the plant growth stages were three important factors affecting the transient transformation efficiencies. Additionally, pot-grown juvenile plants were syringe-injected with two A. rhizogenes strains A8196 and NCPPB 1855, to establish transformed roots. After infections, ice plants were grown hydroponically and showed GUS expressions in transformed roots for 8 consecutive weeks.</p><p><strong>Conclusions: </strong>Our Agrobacterium-mediated transformation protocols utilized hypocotyl-derived callus and seedlings as plant materials, which can be easily obtained in large quantity. The average successful transient transformation rates were about 2.4-3.0% with callus and 33.3-100.0% with seedlings. We also developed a rapid and efficient protocol to generate transgenic roots by A. rhizogenes infections without laborious and challenging tissue culture techniques. This protocol to establish composite ice plant system demonstrates excellent improvements in efficiency, efficacy, and ease of use over previous ice plant transformation protocols. These Agrobacterium-mediated transformation protocols can be versatile and efficient tools for exploring gene functions at cellular and organ levels of ice plants.</p>","PeriodicalId":48844,"journal":{"name":"Botanical Studies","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2019-01-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s40529-018-0249-3","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36884645","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 17
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Botanical Studies
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