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Ultrastructural changes during the symbiotic seed germination of Gastrodia elata with fungi, with emphasis on the fungal colonization region. 天麻与真菌共生种子萌发过程中的超微结构变化,重点是真菌定殖区。
IF 3.4 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2020-02-12 DOI: 10.1186/s40529-019-0280-z
Yuan-Yuan Li, Shun-Xing Guo, Yung-I Lee

Background: Gastrodia elata is a fully mycoheterotrophic orchid and has long been used in traditional Chinese medicine. The life cycle of G. elata requires an association with two different fungi-Mycena for seed germination and Armillaria for tuber growth. The association with Armillaria is representative of the phytophagous type of orchid mycorrhiza: the intracellular hyphae are lysed without forming condensed pelotons. However, whether the association with Mycena during seed germination belongs to the same type of orchid mycorrhiza is unknown.

Results: Histological and ultrastructural studies revealed several notable features in different developmental stages. First, a thickened cell wall with papillae-like structures appeared during fungal penetration in the suspensor end cell, epidermal cells and cortical cells of germinating embryos. In addition, the formation of two distinctive cell types in the colonized region of a protocorm (i.e., the passage canal cell filled with actively growing fungal hyphae) can be observed in the epidermal cell, and the distinctive digestion cell with a dense cytoplasm appears in the cortex. Finally, within the digestion cell, numerous electron-dense tubules form a radial system and attach to degrading fungal hyphae. The fungal hyphae appear to be digested through endocytosis.

Conclusions: The present study provides important structural evidence for the phytophagous type of orchid mycorrhiza in the symbiotic germination of G. elata with Mycena. This case demonstrates a particular nutrient transfer network between G. elata and its litter-decaying fungal partner.

背景:天麻(Gastrodia elata)是一种全霉菌兰科植物,长期以来一直被用于传统中药中。天麻的生命周期需要与两种不同的真菌结合--Mycena(用于种子发芽)和Armillaria(用于块茎生长)。与臂孢菌的结合是兰花菌根中植物吞噬型菌根的代表:胞内菌丝被裂解,而不形成凝结的颗粒。然而,在种子萌发过程中与霉菌的结合是否属于兰花菌根的同一类型尚不清楚:组织学和超微结构研究显示了不同发育阶段的几个显著特点。首先,在真菌穿透发芽胚的悬丝末端细胞、表皮细胞和皮层细胞时,细胞壁增厚并出现乳头状结构。此外,在原球茎的定殖区(即充满活跃生长的真菌菌丝的通道细胞),可以观察到表皮细胞中形成了两种独特的细胞类型,而在皮层细胞中则出现了具有致密细胞质的独特消化细胞。最后,在消化细胞内,许多电子致密小管形成一个放射状系统,并附着在降解的真菌菌丝上。真菌菌丝似乎是通过内吞作用被消化的:结论:本研究提供了重要的结构证据,证明兰花菌根的植食性类型存在于 G. elata 与真菌的共生发芽过程中。本研究为兰花菌根的植食性共生萌发提供了重要的结构证据,证明了兰花菌根与其垃圾腐生真菌伙伴之间的特殊营养传递网络。
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引用次数: 0
Vessel elements of two thelypteroid ferns-part I. 两种蕨类植物的叶脉元素--第一部分。
IF 3.4 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2020-01-27 DOI: 10.1186/s40529-020-0281-y
Swastika Laskar, Utsha Ghoshal, Kakali Sen

Background: Hydraulically efficient xylem was evolved in the vascular plants as an apomorphy of the group. Main xylem components involved in water conduction are tracheid and vessel. Vessels, in which two ends are perforated, constituted major evolutionary innovation within vascular plants, presumably providing more efficient solute conduction. Not all vascular plants have vessels. In pteridophytes vessels are present only in seven genera. The contention lies regarding the presence and distribution of vessel in pteridophytes are the impulsive force of this investigation.

Methods: Tracheary elements are isolated following the standard maceration technique, then hand-razor cut longisections are passed through the aqueous alcohol grades and air-dried samples are placed on stub, sputter coated with gold and examined with SEM.

Results: Two thelypteroid ferns viz. Ampelopteris prolifera (Retz.) Copel. and Thelypteris interrupta (Willd.) K. Iwats. are having vessel elements in root, rhizome, stipe, rachis, primary vein/costa, root-rhizome and rhizome-petiole junction i.e. through entire vascular connection of the plant body though the vessel network is interrupted and joined with parenchyma at the end in some places. Presence of vessel elements in the costa of pteridophytic taxa is first time reported by this study. Vessel end-walls are obliquely placed (root, rhizome, and stipe) but oblique to horizontal orientation is noticed in the primary vein/costa. End-walls are with simple, intermediate and compound perforation plates observed through SEM imaging as well as with tissue specific stain. Studied taxa are grown either in terrestrial microclimate of two contrasting environments i.e. sun and shade (A. prolifera) or in open swampy land (T. interrupta) with moderate to highly disturbed places as rapid proliferating populations showing interpopulation variations of tracheary elements length-width(s) and vessel end-wall length-width(s).

Conclusion: Vessel elements are present throughout the entire vascular connections of the plant body of A. prolifera (Retz.) Copel. and T. interrupta (Willd.) K. Iwats. Interpopulation variation of tracheary elements length-width(s) and vessel end-wall length width(s) are noticed. Till date only seven genera of pteridophytes are reported for the presence of vessel and these two genera are the new addition with the previous.

背景:水力高效木质部是维管植物进化而来的,是维管植物群落的一种特殊形态。木质部中参与水分传导的主要成分是气管和血管。血管两端穿孔,是维管植物在进化过程中的重大创新,可能提供了更高效的溶质传导。并非所有维管植物都有血管。在翼手目植物中,只有七个属有血管。关于翼手目植物中血管的存在和分布的争论是本次调查的动力:方法:按照标准浸渍技术分离气管元件,然后将手工剃刀切下的长切片通过水醇等级,将风干的样品放在柱子上,溅射镀金并用扫描电镜检查:结果:两种蕨类植物,即 Ampelopteris prolifera (Retz.) Copel.和 Thelypteris interrupta (Willd.) K. Iwats.的根、根茎、柄、轴、主脉/肋、根-根茎和根茎-叶柄交界处都有血管元素,即贯穿植物体的整个维管连接,尽管血管网络在某些地方中断,并在末端与实质连接。本研究首次报道了翼手目类群的叶缘存在血管元件。血管的端壁呈斜向排列(根、根茎和柄),但在主脉/脊柱中则呈斜向水平排列。通过扫描电子显微镜(SEM)成像和组织特异性染色观察到的端壁有单孔、中间孔和复合孔板。所研究的分类群生长在两种截然不同的陆地小气候环境中,即阳光和阴凉处(A. prolifera),或生长在开阔的沼泽地中(T. interrupta),在中度到高度受干扰的地方快速增殖,表现出气管元素长度-宽度和血管内壁长度-宽度的种群间差异:A.prolifera(Retz.)Copel.和 T.interrupta(Willd.)K.Iwats.植物体的整个维管连接中都有血管元件。注意到气管元素长宽和血管端壁长宽的种间差异。迄今为止,仅有 7 个属的翼手目植物被报道存在血管,而这两个属是新增加的属。
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引用次数: 0
Effect of different mycobionts on symbiotic germination and seedling growth of Dendrobium officinale, an important medicinal orchid. 不同霉菌对重要药用兰科植物 officinale 铁皮石斛共生萌芽和幼苗生长的影响
IF 3.4 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2020-01-27 DOI: 10.1186/s40529-019-0278-6
Ying Zhang, Yuan-Yuan Li, Xiao-Mei Chen, Shun-Xing Guo, Yung-I Lee

Background: Orchids maintain a symbiotic relationship with mycorrhizal fungi in the lifecycle. Previous reports indicated that diverse mycobionts may have different roles during orchid growth and development. Although various mycorrhizal fungi have been isolated from Dendrobium roots and protocorms, little is known about their specific effects on seed germination and seedling growth. To understand the specific role of isolated fungal strains (i.e., Tulasnella and Sebacina), we used symbiotic culture to compare the effect of 6 fungal strains on seed germination and seedling growth of Dendrobium officinale, an important Chinese medicinal orchid.

Results: In symbiotic germination tests, 6 fungal strains (4 Tulasnella strains and 2 Sebacina strains) promoted seed germination with different efficiencies. Seeds inoculated with Tulasnella strains S6 and S7 conferred higher germination percentage and faster protocorm development than other fungal strains. In symbiotic cultures, seedlings inoculated with Sebacina strain S3 had optimal fresh and dry matter yield. Also, Tulasnella strains S6 and S7 promoted seedling growth with good fresh and dry matter yield. Sebacina strain S2 inoculation greatly enhanced root and tiller production and the content of total crude polysaccharides, although seedlings were smaller with less fresh and dry matter yield than other seedlings.

Conclusions: Tulasnella and Sebacina strains could promote seed germination and seedling growth of D. officinale with different efficiencies. Our results suggest a non-specific mycorrhizal association and development-dependent preference. Our data provide the basic knowledge for use of different fungal strains in conservation and/or production practices of D. officinale.

背景:兰花在生命周期中与菌根真菌保持着共生关系。以前的报道表明,不同的菌根真菌在兰花的生长和发育过程中可能有不同的作用。虽然已经从铁皮石斛的根部和原球茎中分离出了各种菌根真菌,但人们对它们对种子萌发和幼苗生长的具体影响知之甚少。为了了解分离出的真菌菌株(即 Tulasnella 和 Sebacina)的具体作用,我们利用共生培养法比较了 6 种真菌菌株对重要中药兰科植物铁皮石斛种子萌发和幼苗生长的影响:结果:在共生萌发试验中,6个真菌菌株(4个Tulasnella菌株和2个Sebacina菌株)对种子萌发的促进效率不同。与其他真菌菌株相比,接种图拉斯菌菌株 S6 和 S7 的种子发芽率更高,原球茎发育更快。在共生培养中,接种 Sebacina 菌株 S3 的幼苗具有最佳的新鲜和干物质产量。此外,Tulasnella 菌株 S6 和 S7 也能促进幼苗生长,并获得良好的新鲜和干物质产量。接种 Sebacina 菌株 S2 大大提高了根和分蘖的产量以及总粗多糖的含量,但秧苗较小,鲜、干物质产量低于其他秧苗:结论:Tulasnella 和 Sebacina 菌株能以不同的效率促进 D. officinale 的种子萌发和幼苗生长。我们的研究结果表明,菌根具有非特异性关联和依赖于生长发育的偏好。我们的数据为在 D. officinale 的保护和/或生产实践中使用不同的真菌菌株提供了基础知识。
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引用次数: 0
Morphological and genetic characteristics of F1 hybrids introgressed from Brassica napus to B. rapa in Taiwan. 台湾甘蓝型油菜向油菜杂交F1的形态与遗传特征。
IF 3.4 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2020-01-21 DOI: 10.1186/s40529-019-0279-5
Yuan-Kai Tu, Han-Wei Chen, Kuang-Yu Tseng, Yen-Chun Lin, Bo-Jein Kuo

Background: Unintentional introgression from genetically modified (GM) oilseed rape (Brassica napus) to a relative is inevitable in the open field. A feasible and practical strategy for restricting the spread of GM offspring is to set a reasonable isolated distance between GM B. napus and the relatives. To define the isolated distance, a pollen donor/recipient pair is a prerequisite to conducting the field trial of pollen flow. However, because the cultivation of GM B. napus is prohibited in Taiwan, it is difficult to obtain relevant information. Thus, this study explored the morphological and genetic characteristics of five varieties of B. napus (donor), three varieties of B. rapa (recipient), and the 15 corresponding F1 hybrids, aiming to construct phenotypic data and genetic variation data and to select the most appropriate pollen donor/recipient for future field trials of pollen flow.

Results: The genome size of all F1 hybrids estimated using flow cytometry showed intermediate DNA content between B. napus and B. rapa varieties. Most of the F1 hybrids had intermediate plant height and blooming period, and the rosette leaves type and colors resembled those of B. napus varieties. The results of sequence-related amplified polymorphism (SRAP) showed an average of 9.52 bands per primer combination and 67.87 polymorphic bands among the F1 hybrid population. Similarity and cluster analyses revealed higher similarity between F1 hybrids and B. napus varieties than between F1 hybrids and B. rapa varieties. Furthermore, we identified a specific 1100-bp band (LOC106302894) in F1 hybrids and B. napus varieties but not in B. rapa varieties.

Conclusions: The rosette leaves and the DNA marker LOC106302894 observed in F1 hybrids are consistent phenotypic and genetic characteristics that can be used to identify the presence of unintentional hybridization from B. napus to B. rapa in Taiwan. Due to the prohibition of GM crop cultivation, the hybridization system of non-GM Brassica species in this study can be utilized as a mimic scheme to conduct pollen flow trials, thus facilitating the determination of the proper isolated distance.

背景:转基因油菜(Brassica napus)无意中向其亲缘种渗透是在开阔田地中不可避免的。在甘蓝型甘蓝型油菜与近缘种之间设置合理的隔离距离是限制转基因后代传播的一种切实可行的策略。为了确定隔离距离,花粉供体/受体对是进行花粉流田间试验的先决条件。然而,由于台湾禁止种植转基因甘蓝型油菜,因此很难获得相关信息。因此,本研究对5个甘蓝型油菜品种(供体)、3个甘蓝型油菜品种(受体)及其15个F1杂交品种的形态和遗传特征进行了研究,旨在构建表型数据和遗传变异数据,为今后花粉流田间试验选择最合适的花粉供体/受体。结果:用流式细胞术估计的F1杂交种的基因组大小显示,DNA含量介于甘蓝型油菜和油菜品种之间。大多数F1杂交种株高和花期中等,莲座叶的类型和颜色与甘蓝型相近。序列相关扩增多态性(SRAP)分析结果显示,每个引物组合平均有9.52条多态性带,F1杂交群体平均有67.87条多态性带。相似分析和聚类分析结果表明,F1杂交种与油菜品种之间的相似性高于F1杂交种与油菜品种之间的相似性。此外,我们在F1杂交种和油菜品种中发现了一个特异的1100 bp的条带(LOC106302894),而油菜品种中没有。结论:在F1杂交品种中观察到的莲座叶和DNA标记LOC106302894具有一致的表型和遗传特征,可用于鉴定台湾地区甘蓝型油菜与油菜之间存在非故意杂交。由于禁止转基因作物种植,本研究非转基因芸苔属植物杂交系统可作为模拟方案进行花粉流试验,便于确定适宜的隔离距离。
{"title":"Morphological and genetic characteristics of F<sub>1</sub> hybrids introgressed from Brassica napus to B. rapa in Taiwan.","authors":"Yuan-Kai Tu,&nbsp;Han-Wei Chen,&nbsp;Kuang-Yu Tseng,&nbsp;Yen-Chun Lin,&nbsp;Bo-Jein Kuo","doi":"10.1186/s40529-019-0279-5","DOIUrl":"https://doi.org/10.1186/s40529-019-0279-5","url":null,"abstract":"<p><strong>Background: </strong>Unintentional introgression from genetically modified (GM) oilseed rape (Brassica napus) to a relative is inevitable in the open field. A feasible and practical strategy for restricting the spread of GM offspring is to set a reasonable isolated distance between GM B. napus and the relatives. To define the isolated distance, a pollen donor/recipient pair is a prerequisite to conducting the field trial of pollen flow. However, because the cultivation of GM B. napus is prohibited in Taiwan, it is difficult to obtain relevant information. Thus, this study explored the morphological and genetic characteristics of five varieties of B. napus (donor), three varieties of B. rapa (recipient), and the 15 corresponding F<sub>1</sub> hybrids, aiming to construct phenotypic data and genetic variation data and to select the most appropriate pollen donor/recipient for future field trials of pollen flow.</p><p><strong>Results: </strong>The genome size of all F<sub>1</sub> hybrids estimated using flow cytometry showed intermediate DNA content between B. napus and B. rapa varieties. Most of the F<sub>1</sub> hybrids had intermediate plant height and blooming period, and the rosette leaves type and colors resembled those of B. napus varieties. The results of sequence-related amplified polymorphism (SRAP) showed an average of 9.52 bands per primer combination and 67.87 polymorphic bands among the F<sub>1</sub> hybrid population. Similarity and cluster analyses revealed higher similarity between F<sub>1</sub> hybrids and B. napus varieties than between F<sub>1</sub> hybrids and B. rapa varieties. Furthermore, we identified a specific 1100-bp band (LOC106302894) in F<sub>1</sub> hybrids and B. napus varieties but not in B. rapa varieties.</p><p><strong>Conclusions: </strong>The rosette leaves and the DNA marker LOC106302894 observed in F<sub>1</sub> hybrids are consistent phenotypic and genetic characteristics that can be used to identify the presence of unintentional hybridization from B. napus to B. rapa in Taiwan. Due to the prohibition of GM crop cultivation, the hybridization system of non-GM Brassica species in this study can be utilized as a mimic scheme to conduct pollen flow trials, thus facilitating the determination of the proper isolated distance.</p>","PeriodicalId":48844,"journal":{"name":"Botanical Studies","volume":"61 1","pages":"1"},"PeriodicalIF":3.4,"publicationDate":"2020-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s40529-019-0279-5","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37565367","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 9
Bayesian inference of environmental effects on seaweed production in Japan via a production-environmental suitability model. 通过生产环境适宜性模型对日本海藻生产的环境影响进行贝叶斯推断。
IF 3.4 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2019-02-01 DOI: 10.1186/s40529-018-0250-x
Hungyen Chen

Background: Both natural and human-induced disturbances are commonly responsible for an overall decrease of the world's seaweed. Along Japan's coastal areas, edible seaweed production has been decreasing for decades. In this study, a production-environmental suitability model to estimate the impacts of environmental factors on seaweed production was developed. The developed model not only estimates human-induced disturbances but also quantifies the impacts of environmental factors responsible for the decline of annual seaweed production. The model estimated the temporal variation in human-induced disturbances and the effects of environmental factors (i.e., rainfall, CO2 concentrations, temperature, typhoons, solar radiation, water nutrient levels, and water quality) on edible seaweeds in Japan from 1985 to 2012.

Results: The environmental suitability for seaweed production in Japan was about 4.6 times greater in 1992 than in 2011, meanwhile as a result of human activities, human-induced disturbances of seaweed increased at a rate of 4.9 times faster during the period of 1998-2012 than the period of 1985-1997. The ratio of decreased production to decreased environmental suitability for seaweed production in Japan increased by 15.2% during the study years, which means that seaweed production has become more sensitive to environmental disturbances, including climatic factors and human activities in 1998-2012.

Conclusions: The results are novel in demonstrating temporal variations in the level of environmental suitability to seaweed production by using a simple mathematical model. The production-environmental suitability model successfully predicted seaweed production by reflecting the 28-year temporal variation of the observed seaweed production in Japan.

背景:自然和人类引起的干扰通常是世界海藻总量减少的原因。几十年来,日本沿海地区的食用海藻产量一直在下降。在本研究中,建立了一个生产环境适宜性模型来估计环境因素对海藻生产的影响。所开发的模型不仅估计了人为干扰,还量化了导致年度海藻产量下降的环境因素的影响。该模型估计了1985年至2012年人类干扰的时间变化以及环境因素(即降雨量、二氧化碳浓度、温度、台风、太阳辐射、水营养水平和水质)对日本可食用海藻的影响。结果:1992年日本海藻生产的环境适宜性约为2011年的4.6倍,同时,由于人类活动的影响,人类对海藻的干扰在1998-2012年期间的增长速度是1985-1997年的4.9倍。在研究期间,日本海藻生产的产量下降与环境适应性下降的比例增加了15.2%,这意味着海藻生产对环境干扰变得更加敏感,包括1998-2012年的气候因素和人类活动。结论:通过使用一个简单的数学模型,这些结果在证明环境对海藻生产的适宜性水平的时间变化方面是新颖的。生产环境适宜性模型通过反映日本观测到的海藻产量28年的时间变化,成功地预测了海藻产量。
{"title":"Bayesian inference of environmental effects on seaweed production in Japan via a production-environmental suitability model.","authors":"Hungyen Chen","doi":"10.1186/s40529-018-0250-x","DOIUrl":"10.1186/s40529-018-0250-x","url":null,"abstract":"<p><strong>Background: </strong>Both natural and human-induced disturbances are commonly responsible for an overall decrease of the world's seaweed. Along Japan's coastal areas, edible seaweed production has been decreasing for decades. In this study, a production-environmental suitability model to estimate the impacts of environmental factors on seaweed production was developed. The developed model not only estimates human-induced disturbances but also quantifies the impacts of environmental factors responsible for the decline of annual seaweed production. The model estimated the temporal variation in human-induced disturbances and the effects of environmental factors (i.e., rainfall, CO<sub>2</sub> concentrations, temperature, typhoons, solar radiation, water nutrient levels, and water quality) on edible seaweeds in Japan from 1985 to 2012.</p><p><strong>Results: </strong>The environmental suitability for seaweed production in Japan was about 4.6 times greater in 1992 than in 2011, meanwhile as a result of human activities, human-induced disturbances of seaweed increased at a rate of 4.9 times faster during the period of 1998-2012 than the period of 1985-1997. The ratio of decreased production to decreased environmental suitability for seaweed production in Japan increased by 15.2% during the study years, which means that seaweed production has become more sensitive to environmental disturbances, including climatic factors and human activities in 1998-2012.</p><p><strong>Conclusions: </strong>The results are novel in demonstrating temporal variations in the level of environmental suitability to seaweed production by using a simple mathematical model. The production-environmental suitability model successfully predicted seaweed production by reflecting the 28-year temporal variation of the observed seaweed production in Japan.</p>","PeriodicalId":48844,"journal":{"name":"Botanical Studies","volume":"60 1","pages":"2"},"PeriodicalIF":3.4,"publicationDate":"2019-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s40529-018-0250-x","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36908075","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 6
Effective Agrobacterium-mediated transformation protocols for callus and roots of halophyte ice plant (Mesembryanthemum crystallinum). 有效的农杆菌介导的盐生冰生植物愈伤组织和根的转化方案。
IF 3.4 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2019-01-07 DOI: 10.1186/s40529-018-0249-3
Hau-Hsuan Hwang, Chih-Hao Wang, Hsiao-Huei Chen, Jia-Fang Ho, Shin-Fei Chi, Fan-Chen Huang, Hungchen Emilie Yen

Background: Ice plant (Mesembryanthemum crystallinum L.) is a model plant for studying salt-tolerant mechanisms in higher plants. Many salt stress-responsive ice plant genes have been identified with molecular and biochemical approaches. However, no further functional characterization of these genes in host plant due to lack of easy and effective transformation protocols.

Results: To establish efficient transformation system of ice plants, three types of ice plant materials, hypocotyl-derived callus, aseptically-grown seedlings and pot-grown juvenile plants, were used to develop Agrobacterium-mediated transformation protocols. The highest transient transformation efficiency was with 5-day-old ice plant callus co-incubated with an Agrobacterium tumefaciens at 2.5 × 109 cells mL-1 for 48 h. The 3-day-old ice plant seedlings with root tip removed were successfully infected with A. tumefaciens or A. rhizogenes, and obtained 85% and 33-100% transient transformation rates, respectively. The transient transformation assays in ice plant callus and seedlings demonstrated that the concentrations of Agrobacteria, the durations of co-incubation time, and the plant growth stages were three important factors affecting the transient transformation efficiencies. Additionally, pot-grown juvenile plants were syringe-injected with two A. rhizogenes strains A8196 and NCPPB 1855, to establish transformed roots. After infections, ice plants were grown hydroponically and showed GUS expressions in transformed roots for 8 consecutive weeks.

Conclusions: Our Agrobacterium-mediated transformation protocols utilized hypocotyl-derived callus and seedlings as plant materials, which can be easily obtained in large quantity. The average successful transient transformation rates were about 2.4-3.0% with callus and 33.3-100.0% with seedlings. We also developed a rapid and efficient protocol to generate transgenic roots by A. rhizogenes infections without laborious and challenging tissue culture techniques. This protocol to establish composite ice plant system demonstrates excellent improvements in efficiency, efficacy, and ease of use over previous ice plant transformation protocols. These Agrobacterium-mediated transformation protocols can be versatile and efficient tools for exploring gene functions at cellular and organ levels of ice plants.

背景:冰生植物是研究高等植物耐盐机制的模式植物。许多对盐胁迫有反应的冰植物基因已经通过分子和生物化学方法鉴定出来。然而,由于缺乏简单有效的转化方案,这些基因在寄主植物中没有进一步的功能表征。结果:为了建立高效的冰原植物转化体系,使用三种类型的冰原材料,即下胚轴来源的愈伤组织、无菌培养的幼苗和盆栽的幼苗,制定了农杆菌介导的转化方案。最高的瞬时转化效率是在2.5℃下与根癌土壤杆菌共孵育5天龄的冰植物愈伤组织 × 109个细胞mL-1,持续48小时。用根癌A.tumefaciens或根癌A.rhizogenes成功地感染了去除根尖的3天龄冰苗,获得了85%和33-100%的瞬时转化率。对冰植物愈伤组织和幼苗的瞬时转化试验表明,土壤杆菌浓度、共孵育时间和植株生长阶段是影响瞬时转化效率的三个重要因素。此外,将盆栽幼株用注射器注射两株生根A.rhizogenes菌株A8196和NCPPB1855,以建立转化根。感染后,水培冰植物,并在转化根中连续8周显示GUS表达。结论:我们的农杆菌介导的转化方案利用下胚轴来源的愈伤组织和幼苗作为植物材料,可以容易地大量获得。愈伤组织瞬时转化率平均为2.4-3.0%,幼苗瞬时转化率为33.3-100.0%。我们还开发了一种快速有效的方案,通过a.rhizogenes感染产生转基因根,而无需费力和具有挑战性的组织培养技术。与以前的制冰厂改造方案相比,建立复合制冰厂系统的方案在效率、功效和易用性方面表现出了出色的改进。这些农杆菌介导的转化方案可以成为探索冰植物细胞和器官水平基因功能的多功能和有效工具。
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引用次数: 17
Genome-wide association study of rice genes and loci conferring resistance to Magnaporthe oryzae isolates from Taiwan. 台湾稻瘟病菌抗性基因与基因座的全基因组关联研究。
IF 3.4 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2018-12-21 DOI: 10.1186/s40529-018-0248-4
Heng-An Lin, Szu-Yu Chen, Fang-Yu Chang, Chih-Wei Tung, Yi-Chia Chen, Wei-Chiang Shen, Ruey-Shyang Chen, Chih-Wen Wu, Chia-Lin Chung

Background: Rice blast, caused by Magnaporthe oryzae, is an important rice disease occurring in all rice-growing areas. To manage blast disease effectively and in an environmentally friendly way, it is important to continually discover diverse resistant resources for breeding. In this study, genome-wide association study (GWAS) was used to map genes/loci resistant to rice blast in the open-access rice diversity panel 1 (RDP1), previously genotyped with a 44K single-nucleotide polymorphism array. Two geographically and genetically different M. oryzae isolates from Taiwan, D41-2 and 12YL-DL3-2, were used to challenge RDP1. Infected leaves were visually rated for lesion type (LT) and evaluated for proportion of diseased leaf area (%DLA) by image analysis software.

Results: A total of 32 quantitative trait loci (QTLs) were identified, including 6 from LT, 30 from DLA, and 4 from both LT and DLA. In all, 22 regions co-localized with previously reported resistance (R) genes and/or QTLs, including two cloned R genes, Pita and Ptr; 19 mapped R loci, and 20 QTLs. We identified 100 candidate genes encoding leucine-rich repeat-containing proteins, transcription factors, ubiquitination-related proteins, and peroxidases, among others, in the QTL intervals. Putative resistance and susceptibility haplotypes of the 32 QTL regions for each tested rice accessions were also determined.

Conclusions: By using Taiwanese M. oryzae isolates and image-based phenotyping for detailed GWAS, this study offers insights into the genetics underlying the natural variation of blast resistance in RDP1. The results can help facilitate the selection of desirable donors for gene/QTL validation and blast resistance breeding.

背景:稻瘟病是由稻瘟病菌(Magnaporthe oryzae)引起的一种重要的水稻病害,发生在所有水稻产区。为了以环保的方式有效地管理稻瘟病,重要的是不断发现多样化的抗性资源进行育种。在这项研究中,利用全基因组关联研究(GWAS)在开放获取水稻多样性面板1 (RDP1)中定位抗稻瘟病的基因/位点,之前使用44K单核苷酸多态性阵列进行基因分型。利用台湾两个地理和遗传上不同的米曲菌分离株D41-2和12YL-DL3-2对RDP1进行攻毒。通过图像分析软件对感染叶片的病变类型(LT)进行目测评分,并对患病叶片面积比例(%DLA)进行评估。结果:共鉴定出32个数量性状位点(qtl),其中LT 6个,DLA 30个,LT和DLA各4个。总共有22个区域与先前报道的抗性(R)基因和/或qtl共定位,包括两个克隆的R基因Pita和Ptr;19个R位点,20个qtl。我们在QTL区间确定了100个候选基因,编码富含亮氨酸的重复序列蛋白、转录因子、泛素化相关蛋白和过氧化物酶等。测定了每个水稻材料32个QTL区域的推定抗性和易感性单倍型。结论:本研究利用台湾稻瘟病分枝杆菌分离株和基于图像的表型分析进行了详细的GWAS,从而深入了解了RDP1稻瘟病抗性自然变异的遗传学基础。该结果有助于选择合适的供体进行基因/QTL验证和抗稻瘟病育种。
{"title":"Genome-wide association study of rice genes and loci conferring resistance to Magnaporthe oryzae isolates from Taiwan.","authors":"Heng-An Lin,&nbsp;Szu-Yu Chen,&nbsp;Fang-Yu Chang,&nbsp;Chih-Wei Tung,&nbsp;Yi-Chia Chen,&nbsp;Wei-Chiang Shen,&nbsp;Ruey-Shyang Chen,&nbsp;Chih-Wen Wu,&nbsp;Chia-Lin Chung","doi":"10.1186/s40529-018-0248-4","DOIUrl":"https://doi.org/10.1186/s40529-018-0248-4","url":null,"abstract":"<p><strong>Background: </strong>Rice blast, caused by Magnaporthe oryzae, is an important rice disease occurring in all rice-growing areas. To manage blast disease effectively and in an environmentally friendly way, it is important to continually discover diverse resistant resources for breeding. In this study, genome-wide association study (GWAS) was used to map genes/loci resistant to rice blast in the open-access rice diversity panel 1 (RDP1), previously genotyped with a 44K single-nucleotide polymorphism array. Two geographically and genetically different M. oryzae isolates from Taiwan, D41-2 and 12YL-DL3-2, were used to challenge RDP1. Infected leaves were visually rated for lesion type (LT) and evaluated for proportion of diseased leaf area (%DLA) by image analysis software.</p><p><strong>Results: </strong>A total of 32 quantitative trait loci (QTLs) were identified, including 6 from LT, 30 from DLA, and 4 from both LT and DLA. In all, 22 regions co-localized with previously reported resistance (R) genes and/or QTLs, including two cloned R genes, Pita and Ptr; 19 mapped R loci, and 20 QTLs. We identified 100 candidate genes encoding leucine-rich repeat-containing proteins, transcription factors, ubiquitination-related proteins, and peroxidases, among others, in the QTL intervals. Putative resistance and susceptibility haplotypes of the 32 QTL regions for each tested rice accessions were also determined.</p><p><strong>Conclusions: </strong>By using Taiwanese M. oryzae isolates and image-based phenotyping for detailed GWAS, this study offers insights into the genetics underlying the natural variation of blast resistance in RDP1. The results can help facilitate the selection of desirable donors for gene/QTL validation and blast resistance breeding.</p>","PeriodicalId":48844,"journal":{"name":"Botanical Studies","volume":"59 1","pages":"32"},"PeriodicalIF":3.4,"publicationDate":"2018-12-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s40529-018-0248-4","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36797377","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 17
Age and site-specific pattern on encrustation of charophytes. 叶绿植物结壳的年龄和地点特征。
IF 3.4 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2018-12-19 DOI: 10.1186/s40529-018-0247-5
Anne Herbst, Hendrik Schubert

Encrustation and element content (Ca, Fe, K, Mg and P) of charophytes was studied along plant thalli to investigate the dependency of thallus age and site-specificity. Charophytes were collected from five sampling sites (Angersdorfer Teiche, Asche, Bruchwiesen, Krüselinsee and Lützlower See) which were distinct with respect to water chemistry. Furthermore, photosynthesis was measured to identify the physiological state of plants in habitat waters and with the addition of different ion concentrations (Ca2+, K+, Mg2+ and Na+). Age pattern on encrustation of charophytes was site-specific: carbonate content increased from the youngest to the oldest part (Angersdorfer Teiche), younger parts were less encrusted than older parts in Asche, Bruchwiesen and Krüselinsee, whereas encrustation in Lützlower See was the same along plants thallus. Charophytes showed species-specific encrustation in investigated sites. Encrustation of C. hispida in Angersdorfer Teiche was also as high as of individuals from hard-water lakes irrespective of 10.15 mS cm-1 (salinity of 6.3). For species growing in Angersdorfer Teiche, K/Na content and photosynthesis was lowest when compared to other sites. Photosynthesis of charophytes was enhanced after the addition of KCl and adversely affected by CaCl2, MgCl2 and NaCl. In summary, it was shown that encrustation of charophytes in water sites with strong ion anomalies could be as high as in hard-water lakes. It is assumed that ion composition, rather than ion concentration of Na+, Mg2+ and SO42-, impact on the encrustation of charophytes. The age pattern on encrustation in this study showed a strong site-specificity, whereas encrustation of charophytes was species-specific. Ion concentrations, either of habitats or actively added in laboratory measurements, impact on encrustation, element content and photosynthesis of charophytes.

以植物为研究对象,研究了叶绿体的结壳和元素(Ca、Fe、K、Mg和P)含量与菌龄和位点特异性的关系。从五个取样点(Angersdorfer Teiche、Asche、Bruchwiesen、kr selinsee和l tzlower See)收集到的苔藓植物在水化学方面具有明显的差异。此外,通过测定光合作用来确定植物在栖息地水域和不同离子浓度(Ca2+、K+、Mg2+和Na+)下的生理状态。叶绿植物结壳的年龄分布具有地点特征:碳酸盐含量从最年轻到最古老(Angersdorfer Teiche), Asche、Bruchwiesen和kr selinsee的年轻部分比年老部分结壳少,而l tzlower See的结壳沿植物的菌体方向相同。在所调查的地点,叶绿植物显示出物种特有的结壳。在10.15 mS cm-1(盐度为6.3)条件下,Angersdorfer Teiche地区的C. hispida结壳率与硬水湖泊相同。在Angersdorfer Teiche生长的物种K/Na含量和光合作用均低于其他地点。添加KCl后,绿叶植物的光合作用增强,CaCl2、MgCl2和NaCl对光合作用有不利影响。综上所述,在具有强离子异常的水体中,叶绿植物的结壳率可能与硬水湖泊一样高。假设是离子组成,而不是Na+, Mg2+和SO42-离子浓度,影响了叶绿素的结壳。本研究的结壳年龄模式显示出很强的位点特异性,而蕨类的结壳具有种特异性。生境或实验室测量中主动添加的离子浓度对蕨类植物的结壳、元素含量和光合作用有影响。
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引用次数: 2
Squalene synthase cloning and functional identification in wintersweet plant (Chimonanthus zhejiangensis). 腊梅植物角鲨烯合成酶的克隆及功能鉴定
IF 3.4 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2018-12-11 DOI: 10.1186/s40529-018-0246-6
Guanhua Liu, Jianyu Fu

Background: Three species of wintersweets: Chimonanthus salicifolius S. Y. Hu, Chimonanthus zhejiangensis M. C. Liu and Chimonanthus grammalus M. C. Liu are widely distributed in China. The three wintersweets belonging to the genus of Chimonanthus that can synthesize abundant terpenoids that are beneficial to human health. Their buds and leaves are traditional Chinese herb applied by the 'She' ethnic minority in southeast of China. Squalene is a multi-functional and ubiquitous triterpene in plants, which is biosynthesized by squalene synthase (SQS) using farnesyl diphosphate (FPP) as the substrate. The synthesis of squalene in wintersweet was not clearly. This work would provide us much help to further understand the terpene metabolism in wintersweet and its health function to people at phytochemistry and molecular levels.

Results: In this study, we identified squalene component in the extractions of leaves of three wintersweets and isolated SQS genes from leaf transcriptomes. The three SQSs were highly conservative, so CzSQS from C. zhejiangensis was just determined the enzymatic activity. The in vitro expressed CzSQS that deleted two transmembrane domains could catalyze FPP to generate squalene with the presence of NADPH and Mg2+.

Conclusions: The squalene was one of wintersweet leaves phytochemicals. The squalene synthases of three wintersweet plants were highly conserved. The CzSQS was capable to catalyze two FPP molecules to squalene.

背景:三种腊梅在中国广泛分布,分别是:Chimonanthus salicifolius S. Y. Hu、Chimonanthus zhejiangensis M. C. Liu和Chimonanthus grammalus M. C. Liu。三种属于Chimonanthus属的甜菊,能合成丰富的对人体有益的萜类化合物。它们的芽和叶是中国东南部少数民族畲族使用的传统中草药。角鲨烯是一种在植物中广泛存在的多功能三萜,是由角鲨烯合成酶(SQS)以二磷酸法尼酯(FPP)为底物合成的。腊梅中角鲨烯的合成尚不清楚。本研究将有助于我们从植物化学和分子水平进一步了解腊梅萜类代谢及其对人体的保健功能。结果:本研究鉴定了三种梅花叶提取物中的角鲨烯成分,并从叶片转录组中分离到了角鲨烯基因。结果表明,这3种酶活性位点高度保守,仅测定了浙青的CzSQS酶活性。体外表达的缺失两个跨膜结构域的CzSQS可以在NADPH和Mg2+存在下催化FPP生成角鲨烯。结论:角鲨烯是腊梅叶植物化学物质之一。三种腊梅植物的角鲨烯合成酶高度保守。CzSQS能够催化两个FPP分子生成角鲨烯。
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引用次数: 16
Identification, sexual dimorphism and aspects of the natural history of Sapria himalayana (Rafflesiaceae) on Vietnam's Lang Biang Plateau. 越南Lang Biang高原喜马拉雅红椒(Rafflesiaceae)的鉴定、两性异形及其自然史研究。
IF 3.4 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2018-12-10 DOI: 10.1186/s40529-018-0243-9
Hữu Đăng Trần, Hồng Trường Lưu, Quốc Đạt Nguyễn, Hiếu Cường Nguyễn, Parusuraman Athen, K M Wong

Background: Sapria is a distinctive and narrowly host-specific holoparasitic genus belonging to the Rafflesiaceae. Sapria himalayana, rare throughout its range from NE India, SW China, Thailand to Vietnam, is a little-understood species first recorded for Vietnam in 1959, and only recollected there over half a century later in February 2017. This has facilitated an assessment of its taxonomic identity and our understanding of its morphology and natural history aspects.

Results: Six populations of Sapria at Vietnam's Tuyền Lâm Lake, and another two populations at the Nam Ban Protection Forest and the Cam Ly area were found, in an area of about 20 km in radius. Previously documented size attributes, morphological details and colour patterns allowed clear identification of the Vietnamese taxon as Sapria himalayana f. albovinosa. A full description of the species for Vietnam is provided. Past authors have distinguished the sexes by column form and structure, colour of the upper disk, details of the inner surface of the perigone tube, and presence of ovarial chambers below the column in the female. We present additional observations that male flowers consistently have more steeply held perigone lobes than females, in which the lobes were more spread out at wider angles in fully open flowers, and that males have a much lower cupule than females. The latter difference, especially, appears to be useful for quick determination of the sex even in the advanced floral bud stage. The host plant was the lianescent Tetrastigma laoticum (Vitaceae), but superficially it was not possible to ascertain the clonal relationship of neighbouring host lianas. Male and female flowers were found mixed together in the same cluster from one individual liana. Potential pollinators included Calliphorid and Stratiomyid flies observed visiting open flowers.

Conclusions: Our observations have added to an increased understanding of the morphology of this highly specialized parasitic life form. More than this, we have ascertained its occurrence in Vietnam, with information made available to authorities of the Lâm Đồng Province where our studies were conducted, for the sites to be specially demarcated for conservation and carefully managed tourism use.

背景:Sapria是一种独特的全寄生属,属于Rafflesiaceae。喜马拉雅红辣椒在印度东北部、中国西南部、泰国到越南的分布范围内都很罕见,是一种鲜为人知的物种,1959年首次在越南记录,直到半个多世纪后的2017年2月才在那里被发现。这有助于对其分类特性的评估以及我们对其形态和自然历史方面的理解。结果:在越南Tuyền l湖共发现6个种群,在南坂保护林和金礼地区共发现2个种群,分布半径约20 km。先前记录的大小属性、形态细节和颜色模式使越南分类群明确地确定为喜马拉雅红辣椒。提供了越南品种的完整描述。过去的作者通过柱体的形式和结构、上盘的颜色、卵泡管内表面的细节以及柱体下方卵巢室的存在来区分性别。我们提出了额外的观察结果,雄花始终比雌花有更陡峭的花被裂片,其中裂片在完全开放的花中以更宽的角度展开,并且雄花的对偶比雌花低得多。尤其是后一种差异,似乎对快速确定性别很有用,甚至在花蕾阶段的晚期也是如此。寄主植物为藤本四柱藓(Tetrastigma laoticum, Vitaceae),但表面上无法确定邻近藤本植物的克隆关系。在同一株藤本植物中,发现雄花和雌花混合在一起。潜在的传粉者包括访问开放花朵的Calliphorid和Stratiomyid蝇。结论:我们的观察增加了对这种高度特化的寄生生命形式形态的理解。不仅如此,我们还确定了它在越南的情况,并向我们进行研究的 m Đồng省当局提供了资料,以便对这些地点进行特别划定,以进行保护和仔细管理旅游用途。
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引用次数: 6
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Botanical Studies
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