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Maize ZmFDR3 localized in chloroplasts is involved in iron transport. 定位于叶绿体的玉米 ZmFDR3 参与了铁的运输。
Pub Date : 2009-09-01 Epub Date: 2009-10-06 DOI: 10.1007/s11427-009-0108-2
JianHui Han, XiuFang Song, Peng Li, HuiJun Yang, LiPing Yin

Iron is an essential nutrient for plant metabolism such that Fe-limited plants display chlorosis and suffer from reduced photosynthetic efficiency. Differential display previously identified genes whose expression was elevated in Fe-deficient maize roots. Here, we describe the functional characterization of one of the genes identified in the screen, ZmFDR3 (Zea maize Fe-deficiency-related). Heterologous functional complementation assays using a yeast iron uptake mutant showed that ZmFDR3 functions in iron transport. ZmFDR3 contains a domain found in FliN-proteins of the type III secretion system and is predicted to localize to the thylakoid of plastids. Fluorescence immunocytochemistry showed that ZmFDR3 is localized in the plastids of roots, stems and leaves, with high expression found in guard cell chloroplasts. Transgenic tobacco expressing a 35S-ZmFDR3 construct contains elevated iron content, displays well arranged thylakoid membranes and has photosynthetic indices that are higher than those of the wild type. Together, these results suggest that ZmFDR3 functions in chloroplast iron transport.

铁是植物新陈代谢的必需营养元素,因此缺铁植物会出现萎黄病并降低光合效率。之前的差异显示发现了一些基因,这些基因在缺铁的玉米根系中表达量升高。在此,我们描述了筛选出的一个基因 ZmFDR3(玉米缺铁相关基因)的功能特征。利用酵母铁吸收突变体进行的异源功能互补试验表明,ZmFDR3 在铁运输中起作用。ZmFDR3 含有一个在 III 型分泌系统的 FliN 蛋白中发现的结构域,并被预测定位在质体的类色素层。荧光免疫细胞化学显示,ZmFDR3 定位于根、茎和叶的质体中,在保卫细胞叶绿体中的表达量较高。表达 35S-ZmFDR3 构建体的转基因烟草含铁量升高,其叶绿体膜排列整齐,光合指数高于野生型。这些结果表明,ZmFDR3 在叶绿体铁运输中起作用。
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引用次数: 17
Treatment of established colon carcinoma-bearing mice by dendritic cells pulsed with lysates of heat-treated tumor cells. 树突状细胞与热处理肿瘤细胞裂解物脉冲治疗已建立的结肠癌小鼠。
Pub Date : 2009-09-01 Epub Date: 2009-10-06 DOI: 10.1007/s11427-009-0112-6
MinGang Ying, QiuHong Zhen, Sheng Liu, FuSheng Gong, YunQing Xie

To investigate the therapeutic effect of dendritic cells pulsed with lysates of heat-treated CT26 colon carcinoma cells. Bone marrow-derived DCs were pulsed with lysates of heat-treated tumor cells and were used to immunize BALB/c mice with established colon carcinoma. Cytotoxic T lymphocyte (CTL) response was detected. The therapeutic effect induced by DCs was observed by tumor weight and survival time. DCs pulsed with lysates of heat-treated tumor cells markedly induced specific cytotoxic activity of CTLs. Tumor growth in the immunized BALB/c mice was significantly inhibited and the survival time of the tumor-bearing mice was prolonged. DCs pulsed with lysates of heat-treated tumor cells have an observable therapeutic effect on established colon carcinoma-bearing mice.

探讨CT26结肠癌细胞热裂解液对树突状细胞的治疗作用。骨髓来源的dc用热处理肿瘤细胞的裂解物脉冲,并用于免疫已建立结肠癌的BALB/c小鼠。检测细胞毒性T淋巴细胞(CTL)反应。通过肿瘤重量和生存时间观察DCs诱导的治疗效果。用热处理过的肿瘤细胞裂解物脉冲DCs可显著诱导ctl的特异性细胞毒活性。免疫后的BALB/c小鼠肿瘤生长明显受到抑制,荷瘤小鼠存活时间延长。用热处理肿瘤细胞裂解物脉冲DCs对已建立的结肠癌小鼠有明显的治疗作用。
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引用次数: 5
Molecular mapping of Verticillium wilt resistance QTL clustered on chromosomes D7 and D9 in upland cotton. 陆地棉抗黄萎病QTL聚集在D7和D9染色体上的分子定位。
Pub Date : 2009-09-01 Epub Date: 2009-10-06 DOI: 10.1007/s11427-009-0110-8
Feng Jiang, Jun Zhao, Lei Zhou, WangZhen Guo, TianZhen Zhang

Verticillium wilt is a destructive disease with international consequences for cotton production. Breeding broad-spectrum resistant cultivars is considered to be one of the most effective means for reducing crop losses. A resistant cotton cultivar, 60182, was crossed with a susceptible cultivar, Junmian 1, to identify markers for Verticillium resistance genes and validate the mode of its inheritance. Genetic segregation analysis for Verticillium wilt resistance was evaluated based upon infected leaf percentage in the seedling stage using major gene-polygene mixed inheritance models and joint analysis of P(1), P(2), F(1), B(1), B(2) and F(2) populations obtained from the cultivar cross. We found that resistance of upland cotton cultivar 60182 to isolates BP2, VD8 and T9, and their isoconcentration mixture was controlled by two major genes with additive-dominance-epistatic effects, and the inheritance of the major gene was dominant. Furthermore, a genetic linkage map was constructed using F(2) segregating population and resistance phenotypic data were obtained using F(2:3) families inoculated with different isolates and detected in different developmental stages. The genetic linkage map with 139 loci was comprised of 31 linkage groups covering 1165 cM, with an average distance of 8.38 cM between two markers, or 25.89% of the cotton genome length. From 60182, we found 4 QTL on chromosome D7 and 4 QTL on D9 for BP2, 5 QTL on D7 and 9 QTL on D9 for VD8, 4 QTL on D7 and 5 QTL on D9 for T9 and 3 QTL on D7 and 7 QTL on D7 for mixed pathogens. The QTL mapping results revealed that QTL clusters with high contribution rates were screened simultaneously on chromosomes D9 and D7 by multiple interval mapping (CIM), whether from resistance phenotypic data from different developmental stages or for different isolates. The result is consistent with the genetic model of two major genes in 60182 and suggests broad-spectrum resistance to both defoliating isolates of V. dahliae and nondefoliating isolates. The markers associated with resistance QTL may facilitate the use of Verticillium wilt resistance genes in improving breeding programs for cotton.

黄萎病是一种对棉花生产具有破坏性的国际性疾病。选育广谱抗性品种被认为是减少作物损失的最有效手段之一。以棉花抗黄萎病品种60182与敏感品种君棉1号杂交,鉴定抗黄萎病基因标记,验证其遗传模式。采用主基因-多基因混合遗传模型,结合杂交品种P(1)、P(2)、F(1)、B(1)、B(2)、F(2)群体的遗传分离分析,以苗期侵染叶率为指标,对黄萎病抗性进行遗传分离分析。结果表明,60182对分离株BP2、VD8和T9及其等浓度混合物的抗性由两个主基因控制,具有加性-显性-上位性效应,且主基因的遗传为显性。此外,利用F(2)分离群体构建了遗传连锁图谱,并利用F(2:3)家族接种不同菌株,在不同发育阶段检测抗性表型数据。139个位点的遗传连锁图谱由31个连锁群组成,覆盖1165 cM,标记间平均距离为8.38 cM,占棉花基因组长度的25.89%。从60182中,BP2在D7染色体上发现4个QTL,在D9染色体上发现4个QTL, VD8在D7染色体上发现5个QTL,在D9染色体上发现9个QTL,在T9染色体上发现4个QTL,在D9染色体上发现5个QTL,在D7染色体上发现3个QTL,在D7染色体上发现7个QTL。QTL定位结果表明,无论是从不同发育阶段的抗性表型数据还是从不同菌株的抗性表型数据中,多重间隔定位(CIM)都能同时在D9和D7染色体上筛选到贡献率较高的QTL集群。该结果与60182中两个主要基因的遗传模式一致,表明该菌株对大丽花脱落株和非脱落株均具有广谱抗性。与抗黄萎病QTL相关的标记可能有助于棉花抗黄萎病基因的应用。
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引用次数: 59
Stable non-synonymous substitutions on NS gene (NS1 and NS2 proteins) of Qinghai Lake H5N1 influenza virus (Clade 2.2) after successive passages in Muscovy ducks. 青海湖H5N1流感病毒(进化分支2.2)在番鸭中连续传代后NS1和NS2蛋白出现稳定的非同义替换。
Pub Date : 2009-09-01 Epub Date: 2009-10-06 DOI: 10.1007/s11427-009-0115-3
XiaoHui Song, Yu Huang, HaiXia Xiao, Di Liu, George F Gao

Although worldwide concern has been raised since the large-scale outbreak of highly pathogenic avian influenza in wild birds at Qinghai Lake, China in 2005, the factors responsible for the ability to kill waterfowl remain unclear. The why and how questions of the H5N1 virus species-jump into its reservoir host need to be answered. In this report we test the pathogenicity and adaptation of Qinghai Lake (Clade 2.2) isolate to Muscovy ducks for further understanding of this virus. The isolate was highly pathogenic in ducks and retained its high pathogenicity even after 20 generations of passage in ducks. During the process of serial passages, only the NS gene developed non-synonymous substitutions, which caused two mutations in NS1 protein (Val23Ala and Leu207Pro) and one in NS2 (Phe55Leu). These mutations persisted immutably through all subsequent passages and the pathogenicity remained high, implying that highly pathogenic H5N1 virus remains stable in aquatic birds through oral transmission. Although the exact functions of these mutations are not known, our results provide an important foundation for further understanding the characteristics of the Qinghai Lake isolates.

尽管自2005年中国青海湖野生鸟类大规模爆发高致病性禽流感以来,引起了全世界的关注,但导致水禽死亡的因素仍不清楚。需要回答H5N1病毒为何以及如何跳入其宿主的问题。为了进一步了解该病毒,我们对青海湖(进化枝2.2)分离株对莫斯科鸭的致病性和适应性进行了测试。该分离物在鸭中具有高致病性,在鸭中传代20代后仍保持高致病性。在序列传代过程中,只有NS基因发生非同义替换,导致NS1蛋白2个突变(Val23Ala和Leu207Pro), NS2蛋白1个突变(Phe55Leu)。这些突变在随后的所有传代中都不可变地持续存在,致病性仍然很高,这意味着高致病性H5N1病毒通过口传在水禽中保持稳定。虽然这些突变的确切功能尚不清楚,但我们的研究结果为进一步了解青海湖分离株的特征提供了重要的基础。
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引用次数: 0
Distribution and ultrastructure of Merkel cell of the fishing bat (Myotis ricketti). 鱼蝠(Myotis ricketti)默克尔细胞的分布和超微结构。
Pub Date : 2009-09-01 Epub Date: 2009-10-06 DOI: 10.1007/s11427-009-0118-0
JiangXia Yin, HongMei Wang, Paul Racey, ShuYi Zhang

The distribution and ultrastructure of Merkel cells were described in detail in piscivorous bats through immunohistochemistry and transmission electron microscopy techniques. The findings indicated that Merkel cells are commonly found in raised-domes, hair follicles and in the basal epidermis of the skin from their back, abdomen, intercrural membranes, wing membranes and footpads. However, the density of Merkel cells is significantly higher in the footpad than in other places. These results suggested that there may be a link between Merkel cells and tactile sense, and also might imply that raised-domes with air-flow sensitive hairs played an important role in adjusting flying gestures by monitoring the air flow around the body. The ultrastructure of Merkel cells is similar to other vertebrates except having more intermediate filaments and larger granules.

利用免疫组织化学和透射电镜技术详细描述了食鱼蝙蝠Merkel细胞的分布和超微结构。研究结果表明,默克尔细胞通常存在于凸起的圆顶、毛囊和背部、腹部、脚间膜、翅膀膜和脚垫的皮肤基底表皮中。然而,默克尔细胞的密度在脚垫明显高于其他地方。这些结果表明,默克尔细胞和触觉之间可能存在联系,也可能意味着,带有气流敏感毛的凸起的圆顶通过监测身体周围的气流,在调整飞行姿势方面发挥了重要作用。默克尔细胞的超微结构与其他脊椎动物相似,只是中间纤维更多,颗粒更大。
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引用次数: 9
Quantitative analysis of the ribbon synapse number of cochlear inner hair cells in C57BL/6J mice using the three-dimensional modeling method. 采用三维建模方法定量分析C57BL/6J小鼠耳蜗内毛细胞带状突触数量。
Pub Date : 2009-09-01 Epub Date: 2009-10-06 DOI: 10.1007/s11427-009-0116-2
Ke Liu, ShuNa Li, XueJun Jiang

In mammals, the ribbon synapses of cochlear inner hair cells are a synaptic structure of the first sensory nerve in the pathway of acoustical signal transmission to the acoustic center, and it is directly involved in voice coding and neurotransmitter release. It is difficult to quantitatively analyze the ribbon synaptic number only using an electron microscope, because the ribbon synaptic number is relatively limited and their location is deep. In this study, the specific presynaptic structure-RIBEYE, and non-specific postsynaptic structure-GluR 2 & 3 in C57BL/6J mouse basilar membrane samples were treated by immunofluorescent labeling. Serial section was performed on the samples using a laser scanning confocal microscope, and then the serial sections were used to build three-dimensional models using 3DS MAX software. Each fluorescein color pair indicates one synapse, so the number of ribbon synapses of inner hair cells is obtained. The spatial distribution and the number of ribbon synapses of cochlear inner hair cells were clearly shown in this experiment, and the mean number of ribbon synapses per inner hair cell was 16.10+/-1.03. Our results have demonstrated the number of ribbon synapses is accurately calculated by double immunofluorescent labeling to presynaptic and postsynaptic structures, serial sections obtained using a laser scanning confocal microscope, and three-dimensional modeling obtained using 3DS MAX software. The method above is feasible and has important significance for further exploring the mechanism of sensorineural deafness.

哺乳动物耳蜗内毛细胞带状突触是声信号传递到声中枢通路中第一感觉神经的突触结构,直接参与声音编码和神经递质释放。由于带状突触数量相对有限且位置较深,仅用电子显微镜很难定量分析带状突触数量。本研究对C57BL/6J小鼠基底膜样品中的特异性突触前结构- ribeye和非特异性突触后结构- glur 2和3进行免疫荧光标记。利用激光扫描共聚焦显微镜对样品进行连续切片,然后利用3DS MAX软件建立三维模型。每个荧光素色对表示一个突触,从而得到内毛细胞带状突触的数目。本实验清晰显示了耳蜗内毛细胞带状突触的空间分布和数目,平均每个内毛细胞带状突触数目为16.10+/-1.03。我们的研究结果表明,通过对突触前和突触后结构进行双重免疫荧光标记,使用激光扫描共聚焦显微镜获得连续切片,并使用3DS MAX软件获得三维建模,可以准确计算带状突触的数量。上述方法是可行的,对进一步探讨感音神经性耳聋的发病机制具有重要意义。
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引用次数: 8
miRNAs modulate the drug response of tumor cells. miRNAs调节肿瘤细胞的药物反应。
Pub Date : 2009-09-01 Epub Date: 2009-10-06 DOI: 10.1007/s11427-009-0114-4
XueMei Wu, HuaSheng Xiao

Chemotherapy is one of the major treatments of malignant carcinomas. However, its efficiency is affected by both intrinsic and acquired resistance to anticancer drugs. The cellular mechanisms of drug resistance include the overexpression of energy-dependent transporters that eject anticancer drugs from cells such as p-glycoprotein and multidrug resistance related protein (MRP), the mutation of drug targets, the activation of DNA repair pathways, the defects in cellular death pathways and so on. The genetic and epigenetic changes of these genes can lead to cancer drug resistance. Among these mechanisms, microRNAs (miRNAs) which are critical and essential for many important processes such as development, differentiation, and even carcinogenesis have been reported to regulate the chemo-sensitivity of tumor cells. In this paper we briefly review the relationship between miRNA and cancer drug resistance.

化疗是恶性肿瘤的主要治疗方法之一。然而,它的有效性受到内在和获得性耐药的双重影响。耐药的细胞机制包括p-糖蛋白、多药耐药相关蛋白(MRP)等从细胞中射出抗癌药物的能量依赖性转运体的过度表达、药物靶点的突变、DNA修复途径的激活、细胞死亡途径的缺陷等。这些基因的遗传和表观遗传变化可导致癌症耐药性。在这些机制中,对于肿瘤细胞的发育、分化甚至癌变等许多重要过程至关重要的microRNAs (miRNAs)已被报道调节肿瘤细胞的化学敏感性。本文就miRNA与肿瘤耐药的关系作一综述。
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引用次数: 28
Hsp70A-RBCS2 融合启动子调控PHB合成酶基因在莱茵衣藻中的表达 Hsp70A-RBCS2 融合启动子调控PHB合成酶基因在莱茵衣藻中的表达
Pub Date : 2009-08-20 DOI: 10.1360/ZC2009-39-8-775
王潮岗, 胡章立
利用 Hsp70A-RBCS2 融合启动子构建了新型的莱茵衣藻表达载体, 并获得了聚-β-羟基丁酸(PHB)合成酶基因(phbC)的衣藻表达载体p105C124和pH105C124. 通过“珠磨法”分别将上述两个衣藻表达载体导入细胞壁缺陷的莱茵衣藻CC-849 ( Chlamydomonas reinhardtii CC-849)中, 得到了具有Zeomycin抗性的转基因藻株. Hsp70A-RBCS2启动子介导的外源基因遗传转化效率明显高于RBCS2启动子, Southern杂交结果显示, phbC基因以低拷贝数整合进莱茵衣藻的基因组DNA中. 在光照下, Hsp70A-RBCS2融合启动子能够有效调控phbC基因在莱茵衣藻中的转录和翻译, 得到的蛋白产物具有PHB合成酶活性, 40℃热激诱导可使PHB合成酶的酶活性提高到1.8倍. 因此, Hsp70A-RBCS2 融合启动子可使phbC基因在莱茵衣藻中实现可诱导的表达, 该研究对利用衣藻合成PHB具有重要的学术意义, 进一步的研究将通过“共转化”法获得二价或三价的转基因藻, 最终实现在转基因藻中合成PHB.
利用 Hsp70A-RBCS2 融合启动子构建了新型的莱茵衣藻表达载体, 并获得了聚-β-羟基丁酸(PHB)合成酶基因(phbC)的衣藻表达载体p105C124和pH105C124. 通过“珠磨法”分别将上述两个衣藻表达载体导入细胞壁缺陷的莱茵衣藻CC-849 ( Chlamydomonas reinhardtii CC-849)中, 得到了具有Zeomycin抗性的转基因藻株. Hsp70A-RBCS2启动子介导的外源基因遗传转化效率明显高于RBCS2启动子, Southern杂交结果显示, phbC基因以低拷贝数整合进莱茵衣藻的基因组DNA中. 在光照下, Hsp70A-RBCS2融合启动子能够有效调控phbC基因在莱茵衣藻中的转录和翻译, 得到的蛋白产物具有PHB合成酶活性, 40℃热激诱导可使PHB合成酶的酶活性提高到1.8倍. 因此, Hsp70A-RBCS2 融合启动子可使phbC基因在莱茵衣藻中实现可诱导的表达, 该研究对利用衣藻合成PHB具有重要的学术意义, 进一步的研究将通过“共转化”法获得二价或三价的转基因藻, 最终实现在转基因藻中合成PHB.
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引用次数: 0
Molecular cloning and differential expression patterns of the regulatory subunit B' gene of PP2A in goldfish, Carassius auratus. 金鱼PP2A调控亚基B′基因的克隆及差异表达模式
Pub Date : 2009-08-01 Epub Date: 2009-08-29 DOI: 10.1007/s11427-009-0094-4
Hu Fu, HaiLi Ma, ChunBing Zheng, JiaHan Lü, XiangQian Yu, Chi Li, YunLei Peng, GaoPeng Liao, WenBin Liu, YaMei Xiao, Yun Liu, David WanCheng Li

It is well established that the protein serine/threonine phosphatase 2A (PP2A) plays very important roles in many different cellular processes, including cell proliferation and differentiation, gene expression, neurotransmission, apoptosis, and aging. PP2A consists of three heterogenic subunits: the scaffold subunit A, the catalytic subunit C, and the regulatory subunit B. While both the scaffold and the catalytic subunits contain only two forms, at least four families of the regulatory subunits, B, B', B'', and B''' have been identified. These regulatory subunits from different families are encoded by different genes and bear other functions besides directing the specificity of PP2A. To study the functions of the regulatory subunits of PP2A in lower vertebrates, we have cloned the full-length cDNA sequence of the gene encoding the regulatory subunit B'delta of PP2A from gold fish, Carassius auratus using 3'-RACE and 5'-RACE cloning strategies. Our results revealed that the full-length B'delta cDNA contains 2415 bp and encodes a protein of 555 amino acids. The B'delta protein displays a very high level of sequence identity with the B'delta regulatory subunit from other species of vertebrates. Regarding its expression pattern, RT-PCR revealed that the highest level of mRNA was detected in brain, a less level detected in liver, spermary, ovary, kidney and gill, and the lowest level detected in the fin. During different developmental stages of gold fish, the highest level of mRNA expression was detected at the stages of two-cell, multiple-cell, blastula and gastrula, and a decreased level of B'gamma mRNA was detected in other developmental stages. At the protein level, the highest expression level of B'delta protein was found in spermary, ovary, brain and heart, a less amount found in liver and the lowest level detected in kidney, gill and fin. Developmentally, B'delta protein was strongly expressed at the stages of two-cell, multiple-cell, blastula, gastrula, neurula, and optic vesicle, and then decreased at the stages of brain differentiation and eye pigmentation. These results suggest that B'delta appears to play a very important role during gold fish development and also in adult tissue homeostasis.

蛋白质丝氨酸/苏氨酸磷酸酶2A (PP2A)在细胞增殖和分化、基因表达、神经传递、细胞凋亡和衰老等许多不同的细胞过程中起着非常重要的作用。PP2A由三个异质亚基组成:支架亚基A、催化亚基C和调控亚基B。虽然支架亚基和催化亚基都只包含两种形式,但至少有四个调控亚基家族,B、B’、B’和B’已被确定。这些来自不同家族的调控亚基由不同的基因编码,除了指导PP2A的特异性外,还具有其他功能。为了研究PP2A调控亚基在低等脊椎动物中的功能,我们利用3′-RACE和5′-RACE克隆策略克隆了鲫鱼PP2A调控亚基B′δ基因的全长cDNA序列。结果表明,B'delta cDNA全长2415 bp,编码555个氨基酸的蛋白。B'delta蛋白与其他脊椎动物的B'delta调节亚基具有非常高的序列一致性。关于其表达模式,RT-PCR结果显示,mRNA在脑组织中表达量最高,在肝脏、精子、卵巢、肾脏和鳃中表达量较低,在鱼鳍中表达量最低。在金鱼的不同发育阶段,mRNA在双细胞、多细胞、囊胚和原肠期表达量最高,在其他发育阶段表达量均较低。在蛋白质水平上,B'delta蛋白在精子、卵巢、大脑和心脏的表达量最高,在肝脏中表达量较少,在肾脏、鳃和鳍中表达量最低。在发育阶段,B'delta蛋白在二细胞、多细胞、囊胚、原肠胚、神经和视神经泡阶段表达强烈,在脑分化和眼睛色素沉着阶段表达减弱。这些结果表明,B'delta基因在金鱼发育和成体组织稳态中起着非常重要的作用。
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引用次数: 3
Large-scale information entropy analysis of important sites in mature and precursor miRNA sequences. 成熟和前体miRNA序列重要位点的大规模信息熵分析。
Pub Date : 2009-08-01 Epub Date: 2009-08-29 DOI: 10.1007/s11427-009-0099-z
JiangFeng Du, YongJun Wu, YinXia Zhang, Lei Wu, XiaoLong Wang, ShiHeng Tao

In order to find evidence of consistent sequence conservation or the base correlation degree in miRNA, some important sites in the sequences of reported miRNA and their precursors (pre-miRNA) were investigated via information entropy analysis. Twelve different groups of sites were obtained from special locations (head, tail) in miRNAs of different sources according to taxonomy (animal, plant and virus) and then analyzed by measuring the single base information redundancy (D(1)(L)) and the adjacent base related information redundancy (D(2)(L)). The results showed that D(2)(L) has more information than D(1)(L), though D(1)(L) changes roughly consistently with D(2)(L) in each group. Viral pre-miRNAs are more conservative than those belonging to animals or plants. In addition, U is dominant in most sites compared with other nucleotides. It was also found that in the middle of several groups, there were sites where miRNAs were cut down from pre-miRNAs by Enzyme Dicer which were significantly conservative. This phenomenon shows that the conservatism is an aspect of the of miRNA and may be involved in the recognition and cutting by the Dicer. Those results provided another perspective for understanding more about the primary structure of pre-miRNA.

为了寻找miRNA序列一致保守性或碱基相关性的证据,利用信息熵分析对已报道的miRNA及其前体(pre-miRNA)序列中的一些重要位点进行了研究。根据分类(动物、植物和病毒)从不同来源mirna的特殊位置(头、尾)获得12组不同的位点,然后通过测量单个碱基信息冗余(D(1)(L))和相邻碱基相关信息冗余(D(2)(L))进行分析。结果表明,D(2)(L)比D(1)(L)具有更多的信息,尽管D(1)(L)在各组中与D(2)(L)变化大致一致。病毒的pre- mirna比动物或植物的更为保守。此外,与其他核苷酸相比,U在大多数位点上占主导地位。我们还发现,在几个组的中间,有miRNAs被酶切(Enzyme Dicer)从pre-miRNAs上切下的位点,这些位点具有显著的保守性。这一现象说明保守性是miRNA的一个方面,可能与Dicer对miRNA的识别和切割有关。这些结果为进一步了解pre-miRNA的初级结构提供了另一个视角。
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引用次数: 5
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Science in China. Series C, Life Sciences / Chinese Academy of Sciences
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