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Multiomic profiling of ER-positive HER2-negative breast cancer reveals markers associated with metastatic spread. er阳性her2阴性乳腺癌的多组学分析揭示了与转移扩散相关的标志物。
IF 5.6 1区 医学 Q1 Medicine Pub Date : 2026-01-12 DOI: 10.1186/s13058-025-02173-9
Sergio Mosquim Junior, Måns Zamore, Johan Vallon-Christersson, Lisa Rydén, Fredrik Levander

Background: Metastatic disease is the main cause of breast cancer (BC)-related deaths, but prediction of metastases remains challenging especially in the large and diverse group with estrogen receptor (ER)-positive, human epidermal growth factor receptor 2 (HER2)-negative tumors. Molecular tumor features beyond currently used markers could provide important information for stratifying metastatic risk. To allow for the discovery of new subtypes and molecular tumor features associated with metastatic spread, i.e., both lymph node and distant metastases, we here leverage advances in proteomic profiling of tumors.

Methods: We developed a protocol for proteome and phosphoproteome analysis using label-free data independent acquisition (DIA) liquid chromatography tandem mass spectrometry (LC-MS/MS) and integrated the generated data with parallel transcriptome data for the profiling of 182 ER-positive, HER2-negative primary BC tumors from the SCAN-B cohort.

Results: A total of 13,571 protein groups, 7107 phosphopeptides and 13,085 expressed genes were quantified in at least 70% of the samples. The data showed clear differences between invasive lobular carcinoma and no special type cancers, including the hallmark loss of E-cadherin expression and differences in catenin levels. We identified potential new subtypes with differential immune infiltration patterns and survival through unsupervised consensus clustering. Additionally, by adopting an integrative, multiomic data analysis workflow, we identified several potential protein markers of both lymph node and distant metastases. For lymph node metastasis, the level of phosphorylated ES8L2 serine at position 570 (multivariable p value = 0.05, HR = 0.61, 95% CI 0.38-0.99) was associated with improved recurrence-free survival, and showed decreased abundance in lymph node positive cases. For distant metastases, on the other hand, proteins belonging to the heat shock protein 90 family were associated with worse distant recurrence-free survival (multivariable p value = 0.0058, HR = 2.10, 95% CI 1.24-3.55), with significantly higher abundance levels in patients with a distant recurrence event. These correlations with survival could also be validated in multiple external cohorts.

Conclusions: In summary, we present the most comprehensive matched multiomic dataset from ER-positive/HER2-negative BC tumors, not only serving as an invaluable resource for further advancing precision medicine but also allowing the discovery of potential biomarkers and providing unique insights into metastatic processes.

Trial registration: Sweden Cancerome Analysis Network-Breast: Genomic Profiling of Breast Cancer (SCAN-B), beginning 2010-08, NCT02306096.

背景:转移性疾病是乳腺癌(BC)相关死亡的主要原因,但转移的预测仍然具有挑战性,特别是在雌激素受体(ER)阳性、人表皮生长因子受体2 (HER2)阴性的肿瘤中。目前使用的标志物之外的分子肿瘤特征可以为转移风险分层提供重要信息。为了发现与转移性扩散相关的新亚型和分子肿瘤特征,即淋巴结和远处转移,我们在这里利用肿瘤蛋白质组学分析的进展。方法:我们采用无标签数据独立采集(DIA)液相色谱串联质谱(LC-MS/MS)开发了蛋白质组和磷蛋白质组分析方案,并将生成的数据与平行转录组数据相结合,用于分析来自SCAN-B队列的182例er阳性、her2阴性的原发性BC肿瘤。结果:至少70%的样品共检测到13571个蛋白组、7107个磷酸肽和13085个表达基因。数据显示浸润性小叶癌与非特殊类型癌症之间存在明显差异,包括E-cadherin表达的标志性缺失和catenin水平的差异。我们通过无监督共识聚类确定了具有不同免疫浸润模式和生存率的潜在新亚型。此外,通过采用综合的多组数据分析工作流程,我们确定了几个潜在的淋巴结和远处转移的蛋白质标志物。对于淋巴结转移,570位点磷酸化ES8L2丝氨酸水平(多变量p值= 0.05,HR = 0.61, 95% CI 0.38-0.99)与改善无复发生存率相关,且在淋巴结阳性病例中丰度降低。另一方面,对于远处转移,属于热休克蛋白90家族的蛋白质与较差的远处无复发生存相关(多变量p值= 0.0058,HR = 2.10, 95% CI 1.24-3.55),在远处复发事件的患者中丰度显著较高。这些与生存率的相关性也可以在多个外部队列中得到验证。结论:总之,我们提供了来自er阳性/ her2阴性BC肿瘤的最全面匹配的多组学数据集,不仅可以作为进一步推进精准医学的宝贵资源,还可以发现潜在的生物标志物,并为转移过程提供独特的见解。试验注册:瑞典癌症基因组分析网络-乳腺:乳腺癌基因组图谱(SCAN-B), 2010-08开始,NCT02306096。
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引用次数: 0
Spatial and temporal dynamics of cancer-associated fibroblast niches in breast cancer. 乳腺癌中癌症相关成纤维细胞生态位的时空动态。
IF 5.6 1区 医学 Q1 Medicine Pub Date : 2026-01-11 DOI: 10.1186/s13058-025-02183-7
Jessica Pantaleo, Jonas Sjölund, Paulina Bolivar, Matteo Bocci, Bengt Phung, Maria Malmberg, Göran B Jönsson, Kristian Pietras
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引用次数: 0
Plasma extracellular vesicles reflect response and prognosis in patients with breast cancer undergoing neoadjuvant treatment. 血浆细胞外囊泡反映乳腺癌患者接受新辅助治疗的反应和预后。
IF 5.6 1区 医学 Q1 Medicine Pub Date : 2026-01-09 DOI: 10.1186/s13058-025-02209-0
Karin Ekström, Nazia Riaz, Karolina Larsson, Afrodite Nemeth, Rossella Crescitelli, Barbro Linderholm, Roger Olofsson Bagge
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引用次数: 0
Distinct genetic profiles of obesity have different effects on breast cancer risk: leveraging Mendelian randomisation to interrogate causal pathways and identify mediating proteins. 肥胖的不同遗传特征对乳腺癌风险有不同的影响:利用孟德尔随机化来询问因果途径并识别中介蛋白。
IF 5.6 1区 医学 Q1 Medicine Pub Date : 2026-01-09 DOI: 10.1186/s13058-025-02214-3
Marina Isabel Marchal, Pascal M Mutie, Tayebeh Azimi, Yaqi Alexandra Deng, Torgny Karlsson, Åsa Johansson
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引用次数: 0
Recreational physical activity and biomarkers of breast cancer risk in a cohort of adolescent girls. 一组青春期女孩的娱乐性体育活动和乳腺癌风险的生物标志物
IF 5.6 1区 医学 Q1 Medicine Pub Date : 2026-01-07 DOI: 10.1186/s13058-025-02216-1
Rebecca D Kehm, Lothar Lilge, E Jane Walter, Regina M Santella, Melissa L White, Julie B Herbstman, Frederica Perera, Rachel L Miller, Mary Beth Terry
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引用次数: 0
Association between metabolic dysfunction-associated steatotic liver disease and breast cancer risk in Korean women: a nationwide population-based cohort study. 韩国女性代谢功能障碍相关脂肪变性肝病与乳腺癌风险之间的关系:一项全国性人群队列研究
IF 5.6 1区 医学 Q1 Medicine Pub Date : 2026-01-07 DOI: 10.1186/s13058-025-02211-6
Jin Ah Lee, Hye Sun Lee, Soyoung Jeon, Dooreh Kim, Young Joo Lee, Soo Youn Bae, Woo-Chan Park, Jong Min Lee, Chang Ik Yoon
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引用次数: 0
Premenopausal serum midkine levels and risk of estrogen receptor positive breast cancer: a prospective, nested case-control study. 绝经前血清midkine水平与雌激素受体阳性乳腺癌的风险:一项前瞻性巢式病例对照研究
IF 5.6 1区 医学 Q1 Medicine Pub Date : 2026-01-06 DOI: 10.1186/s13058-025-02210-7
Pengze Yan, Fen Wu, Yelena Afanasyeva, Alan Arslan, Karen Koenig, Anne Zeleniuch-Jacquotte, Yu Chen, Kornelia Polyak

Background: Midkine is a heparin-binding growth factor that is overexpressed in most human malignancies, including breast cancer. While elevated midkine levels have been associated with tumor progression and aging, its role as a predictive biomarker for breast cancer risk in healthy individuals remains unclear. We previously showed that higher midkine expression in estrogen receptor-positive (ER +) breast cancer in younger (< 55) women is associated with shorter disease-free survival. We investigated whether serum midkine levels in premenopausal women are associated with subsequent risk of ER + breast cancer.

Methods: We conducted a prospective, nested case-control study within the New York University Women's Health Study (NYUWHS). Serum midkine levels were measured in baseline blood samples from 249 premenopausal women who developed ER + breast cancer more than 10 years after blood collection and 249 matched controls. Conditional logistic regression models were used to estimate odds ratios (ORs) and 95% confidence intervals (CIs) across quartiles and continuous midkine levels, adjusting for key breast cancer risk factors.

Results: Higher circulating midkine levels were associated with a marginally statistically significant lower risk of ER + breast cancer. Compared to the lowest quartile, women in the highest quartile had an OR of 0.55 (95% CI: 0.30-0.99; P for trend = 0.10). A doubling in midkine was associated with a 34% reduction in risk (OR = 0.66; 95% CI: 0.42-1.02). The inverse association was generally consistent across subgroups.

Conclusion: These findings suggest that higher baseline serum midkine levels in premenopausal women are associated with a reduced long-term risk of ER + breast cancer. This challenges prior assumptions about midkine's uniformly pro-tumorigenic role and suggests it may be a context-dependent biomarker in breast cancer development.

背景:Midkine是一种在大多数人类恶性肿瘤(包括乳腺癌)中过表达的肝素结合生长因子。虽然midkine水平升高与肿瘤进展和衰老有关,但其作为健康个体乳腺癌风险的预测性生物标志物的作用尚不清楚。我们之前的研究表明,在年轻女性雌激素受体阳性(ER +)乳腺癌中,midkine表达较高(方法:我们在纽约大学妇女健康研究(NYUWHS)中进行了一项前瞻性巢式病例对照研究。在249名绝经前妇女的基线血液样本中测量了血清midkine水平,这些妇女在采血后10年以上患ER +乳腺癌,249名对照组。条件logistic回归模型用于估计四分位数和连续中因子水平的比值比(ORs)和95%置信区间(ci),并对关键乳腺癌危险因素进行调整。结果:较高的循环midkine水平与较低的ER +乳腺癌风险相关。与最低四分位数相比,最高四分位数的女性OR为0.55 (95% CI: 0.30-0.99;趋势P = 0.10)。midkine加倍与34%的风险降低相关(OR = 0.66; 95% CI: 0.42-1.02)。这种负相关在各个亚组之间基本一致。结论:这些发现表明,绝经前妇女较高的基线血清midkine水平与ER +乳腺癌的长期风险降低有关。这挑战了先前关于midkine统一的促肿瘤作用的假设,并表明它可能是乳腺癌发展中依赖于环境的生物标志物。
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引用次数: 0
Molecular subtypes of breast cancer in Jamaican women: high prevalence of triple-negative and HER2 + disease. 牙买加妇女乳腺癌的分子亚型:三阴性和HER2 +疾病的高患病率
IF 5.6 1区 医学 Q1 Medicine Pub Date : 2026-01-06 DOI: 10.1186/s13058-025-02175-7
Richard Shaw, Derria Cornwall, Simone Badal, Leo-Paul Powell, Ayesha Johnson, Rory Thompson, Patrick Roberts
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引用次数: 0
Experimental evaluation of dermal lymphatics in preservation of lymphatic function. 真皮淋巴管保存淋巴功能的实验评价。
IF 5.6 1区 医学 Q1 Medicine Pub Date : 2026-01-05 DOI: 10.1186/s13058-025-02215-2
Luci Hulsman, Ganesh Mohan, Angad S Sidhu, Shahnur Ahmed, Steven J Sullivan, Christopher A Subi-Kasozi, Ayah R Mahariq, Miguel D Jorge, Mithun Sinha, Aladdin H Hassanein

Background: Secondary lymphedema is characterized by limb swelling following lymphatic disruption. This results in decreased lymph flow through the collecting ducts and dermal backflow in the subdermal lymphatics. The role of dermal lymphatics in the development of lymphedema is poorly understood. The purpose of this study is to evaluate the effect of dermal lymphatic preservation in the development of lymphedema in a murine tail experimental model.

Methods: A standard murine lymphedema tail model was used as the study control. A 3 mm circumferential excision was performed 20 mm from the base of the tail. Both collecting lymphatics adjacent to the veins were transected (Full Dermal Disruption (FDD), control, n = 6). The experimental group was a modification of the standard model consisting of two hemi circumferential skin excision and collecting lymphatics transection with 3 mm interval (Partial Dermal Disruption (PDD), experimental, n = 8) maintaining continuity of capillary lymphatics. Tail volume measurements, lymphatic clearance with near Infrared Indocyanine Green (ICG) laser lymphangiography, and histology were assessed.

Results: The PDD group had lower tail volumes compared to FDD till day 28 (p < 0.001). ICG lymphangiography demonstrated better lymphatic clearance in the PDD when compared to FDD (p < 0.001). Reduced dermal thickness (p = 0.004) and collagen deposition (p = 0.008) were observed in PDD. Podoplanin-positive lymphatic vessel density was higher in PDD at the unadjusted level (p = 0.014) but did not meet Bonferroni-corrected significance (α = 0.010).

Conclusion: This study demonstrates dermal lymphatics can preserve lymphatic function despite injury to transporting lymphatic channels. Dermal lymphatics may have the potential for lymphedema prevention at the lymphatic injury site.

背景:继发性淋巴水肿的特征是淋巴破坏后肢体肿胀。这导致通过集合管的淋巴流量减少和真皮下淋巴回流。真皮淋巴系统在淋巴水肿发展中的作用尚不清楚。本研究的目的是评价真皮淋巴保存在小鼠尾部淋巴水肿实验模型中的作用。方法:以标准小鼠尾淋巴水肿模型为研究对照。从尾基部20 mm处行3 mm圆周切除。对静脉附近的两个收集淋巴进行横切(完全真皮破坏(FDD),对照组,n = 6)。实验组是对标准模型的改进,包括两次半周皮肤切除,间隔3mm收集淋巴管横断(部分真皮破坏(PDD),实验,n = 8),保持毛细血管淋巴管的连续性。尾部体积测量、近红外吲哚菁绿(ICG)激光淋巴管造影淋巴清除率和组织学评估。结果:与FDD组相比,PDD组到第28天的尾体积更小(p)。结论:本研究表明,尽管运输淋巴管受到损伤,真皮淋巴管仍能保持淋巴功能。真皮淋巴管可能在淋巴损伤部位有预防淋巴水肿的潜力。
{"title":"Experimental evaluation of dermal lymphatics in preservation of lymphatic function.","authors":"Luci Hulsman, Ganesh Mohan, Angad S Sidhu, Shahnur Ahmed, Steven J Sullivan, Christopher A Subi-Kasozi, Ayah R Mahariq, Miguel D Jorge, Mithun Sinha, Aladdin H Hassanein","doi":"10.1186/s13058-025-02215-2","DOIUrl":"10.1186/s13058-025-02215-2","url":null,"abstract":"<p><strong>Background: </strong>Secondary lymphedema is characterized by limb swelling following lymphatic disruption. This results in decreased lymph flow through the collecting ducts and dermal backflow in the subdermal lymphatics. The role of dermal lymphatics in the development of lymphedema is poorly understood. The purpose of this study is to evaluate the effect of dermal lymphatic preservation in the development of lymphedema in a murine tail experimental model.</p><p><strong>Methods: </strong>A standard murine lymphedema tail model was used as the study control. A 3 mm circumferential excision was performed 20 mm from the base of the tail. Both collecting lymphatics adjacent to the veins were transected (Full Dermal Disruption (FDD), control, n = 6). The experimental group was a modification of the standard model consisting of two hemi circumferential skin excision and collecting lymphatics transection with 3 mm interval (Partial Dermal Disruption (PDD), experimental, n = 8) maintaining continuity of capillary lymphatics. Tail volume measurements, lymphatic clearance with near Infrared Indocyanine Green (ICG) laser lymphangiography, and histology were assessed.</p><p><strong>Results: </strong>The PDD group had lower tail volumes compared to FDD till day 28 (p < 0.001). ICG lymphangiography demonstrated better lymphatic clearance in the PDD when compared to FDD (p < 0.001). Reduced dermal thickness (p = 0.004) and collagen deposition (p = 0.008) were observed in PDD. Podoplanin-positive lymphatic vessel density was higher in PDD at the unadjusted level (p = 0.014) but did not meet Bonferroni-corrected significance (α = 0.010).</p><p><strong>Conclusion: </strong>This study demonstrates dermal lymphatics can preserve lymphatic function despite injury to transporting lymphatic channels. Dermal lymphatics may have the potential for lymphedema prevention at the lymphatic injury site.</p>","PeriodicalId":49227,"journal":{"name":"Breast Cancer Research","volume":" ","pages":"33"},"PeriodicalIF":5.6,"publicationDate":"2026-01-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12869944/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145901400","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The spatial immune landscape predicts outcome and reveals the central role of tumor-associated macrophages in inflammatory breast cancer biology. 空间免疫景观预测结果并揭示肿瘤相关巨噬细胞在炎性乳腺癌生物学中的核心作用。
IF 5.6 1区 医学 Q1 Medicine Pub Date : 2026-01-05 DOI: 10.1186/s13058-025-02192-6
Christophe Van Berckelaer, Steven Van Laere, Chloé Vermeulen, Mark Kockx, Yannick Waumans, Koen Marien, Charlotte Rypens, Noémie Missal, Fedor Berditchevski, François Bertucci, Peter Vermeulen, Luc Dirix, Cecile Colpaert, Gayathri R Devi, Peter Van Dam

Background: Inflammatory breast cancer (IBC) is a rare but aggressive subtype of breast cancer characterized by rapid progression and poor prognosis. Despite its distinct clinical presentation and molecular features, the immune landscape of IBC and its potential role in driving the aggressive phenotype remain poorly understood. This study aimed to characterize the spatial immune landscape of IBC, compare it with that of subtype-matched non-inflammatory breast cancer (nIBC), and evaluate the prognostic implications of immune cell composition and localization.

Methods: We analyzed pre-treatment tumor samples from 161 IBC and 115 subtype-matched nIBC patients using immunohistochemistry (IHC) for CD8, FOXP3, CD79α, CD163, and PD-L1. Digital image analysis quantified the immune cell density and relative marker area in the tumor area (TA) and invasive margin (IM). Associations with clinicopathological features, pathological response to neoadjuvant chemotherapy (NACT), and survival were assessed using multivariate logistic regression and Cox proportional hazards models. Transcriptomic validation was performed using Affymetrix gene expression data and consensus TME deconvolution.

Results: IBC showed higher infiltration of CD163 + tumor-associated macrophages (TAMs) compared to nIBC. Gene expression data confirmed IHC findings, and pathway analysis linked high TAM density with inflammatory and proliferative pathways. The spatial distribution of immune cells was prognostically relevant, with high CD8 + T-cell infiltration (OR: 0.41, 95% CI: 0.22-0.76, P = 0.004) and low CD79α + B-cell infiltration (OR: 3.19, 95% CI: 1.68-6.03, P < 0.001) correlating with improved overall survival in IBC. Furthermore, the ratio of CD8+ T-cells to FOXP3+ regulatory T-cells within the TA was a significant prognostic indicator (OR: 0.34, 95% CI: 0.14-0.83, P = 0.018), whereas the absolute densities of either CD8+ or FOXP3 + T-cells alone were not associated with outcome.

Conclusions: These results highlight the immunosuppressive nature of the IBC microenvironment and the role of TAMs in promoting an aggressive IBC phenotype. Spatial context and the balance between the immune cells, rather than the overall abundance, was critical in determining outcome. Our findings underscore the importance of considering immune cell localization in prognostic assessment and support further investigation of TAM-targeted therapies in IBC.

背景:炎症性乳腺癌(IBC)是一种罕见但侵袭性的乳腺癌亚型,其特点是进展迅速,预后差。尽管其独特的临床表现和分子特征,IBC的免疫景观及其在驱动侵袭性表型中的潜在作用仍然知之甚少。本研究旨在描述IBC的空间免疫景观,并将其与亚型匹配的非炎症性乳腺癌(nIBC)进行比较,并评估免疫细胞组成和定位对预后的影响。方法:采用免疫组化(IHC)方法对161例IBC和115例亚型匹配的nIBC患者治疗前的肿瘤样本进行CD8、FOXP3、CD79α、CD163和PD-L1的检测。数字图像分析量化了肿瘤区(TA)和浸润边缘(IM)的免疫细胞密度和相对标记面积。使用多变量logistic回归和Cox比例风险模型评估与临床病理特征、新辅助化疗病理反应(NACT)和生存率的关系。使用Affymetrix基因表达数据和consensus TME反卷积进行转录组学验证。结果:与nIBC相比,IBC中CD163 +肿瘤相关巨噬细胞(tam)的浸润率更高。基因表达数据证实了IHC的发现,途径分析将高TAM密度与炎症和增殖途径联系起来。免疫细胞的空间分布与预后相关,高CD8 + t细胞浸润(OR: 0.41, 95% CI: 0.22-0.76, P = 0.004)和低CD79α + b细胞浸润(OR: 3.19, 95% CI: 1.68-6.03, P)。结论:这些结果突出了IBC微环境的免疫抑制性质以及tam在促进侵袭性IBC表型中的作用。空间环境和免疫细胞之间的平衡,而不是整体丰度,是决定结果的关键。我们的研究结果强调了在预后评估中考虑免疫细胞定位的重要性,并支持进一步研究tam靶向治疗IBC。
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引用次数: 0
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Breast Cancer Research
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