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Uncovering immune cell-associated genes in breast cancer: based on summary data-based Mendelian randomized analysis and colocalization study. 揭示乳腺癌中免疫细胞相关基因:基于汇总数据的孟德尔随机分析和共定位研究。
IF 7.4 1区 医学 Q1 Medicine Pub Date : 2024-11-29 DOI: 10.1186/s13058-024-01928-0
Jingyang Liu, Wen Sun, Ning Li, Haibin Li, Lijuan Wu, Huan Yi, Jianguang Ji, Deqiang Zheng

Background: Breast cancer, which is the most prevalent form of cancer among women globally, encompasses various subtypes that demand distinct treatment approaches. The tumor microenvironment and immune response are of crucial significance in the development and progression of breast cancer. Nevertheless, there has been scant evidence concerning the genes within breast cancer - specific immune cells.

Methods: We utilized summary data-based Mendelian randomization (SMR) to identify genes associated with breast cancer by utilizing expression quantitative trait loci (eQTL) datasets for 14 different immune cell types and genome-wide association studies (GWAS) for overall breast cancer and its subtypes. Furthermore, colocalization analysis was carried out to evaluate whether the observed association in SMR analyses is influenced by the same causal variant. Replication analysis and bulk RNA sequencing (bulkRNA-seq) analysis were employed to validate promising immune genes as potential drug targets.

Results: After correcting for the rate of false discovery, we discovered a total of 17 genes in 9 immune cell types that were significantly associated with overall breast cancer and its subtypes. The genes KCNN4, L3MBTL3, ZBTB38, MDM4, and TNFSF10 were identified in overall breast cancer and its subtypes. Colocalization analyses provided robust evidence in support of these associations. Notably, the KCNN4 gene in non-classical MONOcytes (MONOnc) was further validated through replication analysis and bulkRNA-seq analysis.

Conclusion: In summary, our research has revealed a repertoire of genes within diverse immune cells associated with breast cancer. KCNN4 gene in non-classical MONOcytes (MONOnc) exhibited a negative association with overall breast cancer and its subtypes, which was identified as a potential drug target for breast cancer, opening up new avenues for therapeutic interventions.

背景:乳腺癌是全球妇女中最常见的癌症形式,包括各种亚型,需要不同的治疗方法。肿瘤微环境和免疫反应在乳腺癌的发生发展中具有重要意义。然而,关于乳腺癌特异性免疫细胞内的基因的证据很少。方法:采用基于汇总数据的孟德尔随机化(SMR)方法,利用14种不同免疫细胞类型的表达数量性状位点(eQTL)数据集和乳腺癌及其亚型的全基因组关联研究(GWAS),鉴定乳腺癌相关基因。此外,我们还进行了共定位分析,以评估SMR分析中观察到的关联是否受到相同因果变量的影响。采用复制分析和大体积RNA测序(bulkRNA-seq)分析来验证有希望的免疫基因作为潜在的药物靶点。结果:在纠正错误发现率后,我们发现9种免疫细胞类型中总共有17个基因与总体乳腺癌及其亚型显著相关。KCNN4、L3MBTL3、ZBTB38、MDM4和TNFSF10基因在总体乳腺癌及其亚型中被鉴定。共地化分析提供了有力的证据来支持这些关联。值得注意的是,通过复制分析和bulkRNA-seq分析进一步验证了非经典单核细胞(MONOnc)中的KCNN4基因。结论:总之,我们的研究揭示了多种免疫细胞中与乳腺癌相关的一系列基因。非经典单核细胞(non-classic MONOcytes, MONOnc)中的KCNN4基因与乳腺癌整体及其亚型呈负相关,被认为是乳腺癌潜在的药物靶点,为治疗干预开辟了新的途径。
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引用次数: 0
Correction: Quantification of intratumoral heterogeneity using habitat-based MRI radiomics to identify HER2-positive, -low and -zero breast cancers: a multicenter study. 校正:使用基于栖息地的MRI放射组学来确定her2阳性、低和零乳腺癌的肿瘤内异质性量化:一项多中心研究。
IF 7.4 1区 医学 Q1 Medicine Pub Date : 2024-11-29 DOI: 10.1186/s13058-024-01938-y
Haoquan Chen, Yulu Liu, Jiaqi Zhao, Xiaoxuan Jia, Fan Chai, Yuan Peng, Nan Hong, Shu Wang, Yi Wang
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引用次数: 0
Metastatic recurrence in women diagnosed with non-metastatic breast cancer: a systematic review and meta-analysis. 被诊断为非转移性乳腺癌妇女的转移性复发:系统回顾和荟萃分析。
IF 7.4 1区 医学 Q1 Medicine Pub Date : 2024-11-27 DOI: 10.1186/s13058-024-01881-y
Eileen Morgan, Colette O'Neill, Richa Shah, Oliver Langselius, Yaqi Su, Clara Frick, Hanna Fink, Aude Bardot, Paul M Walsh, Ryan R Woods, Lou Gonsalves, Jan F Nygård, Serban Negoita, Esmeralda Ramirez-Pena, Karen Gelmon, Nicoleta Antone, Miriam Mutebi, Sabine Siesling, Fatima Cardoso, Julie Gralow, Isabelle Soerjomataram, Melina Arnold

Background: To assess proportions of metastatic recurrence in women initially diagnosed with non-metastatic breast cancer by stage at diagnosis, breast cancer subtype, calendar period and age.

Methods: A systematic search of MEDLINE and Web of Science databases (January 2010-12 May 2022) was conducted. Studies reporting the proportion of distant metastatic recurrence in women with non-metastatic breast cancer were identified and outcomes and characteristics were extracted. Risk of bias was assessed independently by two reviewers. Random-effects meta-analyses of proportions were used to calculate pooled estimates and 95% confidence intervals (CIs).

Results: 193 studies covering over 280,000 patients were included in the main analysis. Pooled proportions of metastatic recurrence increased with longer median follow-up time from 12.2% (95% CI 10.5-14.0%) at 1-4 years post diagnosis, 14.3% (95% CI 12.9-15.7%) at 5-9 years to 23.3% (95% CI 20.1-26.8) at 10 years or more. Regional variation was observed with pooled estimates ranging from 11.0% (95% CI 8.5-13.7%) in Europe to 26.4% (95% CI 16.7-37.4%) in Africa (1-4 years follow-up). Proportions of recurrence were higher in studies with diagnosis before 2000 (22.2%, 95% CI 15.1-30.3) compared to studies with diagnosis from 2000 onwards (12.8%, 95% CI 11.7-14.0). At 1-4 years median follow-up, pooled proportions of metastatic recurrence were higher in women with hormone receptor negative (15.2%, 95% CI 12.0-18.7%) compared with receptor positive disease (9.6%, 95% CI 6.2-13.6%) and in women with locally advanced (33.2%, 95% CI 24.7-42.3%) relative to early disease at initial diagnosis (4.8%, 95% CI 2.5-7.8%). Proportions were higher in those under 50 years compared with 70+ years, 18.6% (95% CI 15.9-21.4%) versus 13.3% (95% CI 9.2, 18.0%), respectively. Heterogeneity was high in all meta-analyses and results should be interpreted with caution.

Conclusions: Higher proportions of metastatic recurrence in patients initially diagnosed at an advanced stage and in earlier calendar period emphasises the importance of early detection and treatment advancements. As the global number of breast cancer survivors increases, research and health policy efforts should be directed towards timely diagnosis and access to effective treatments and care.

Study registration: PROSPERO CRD42022314500.

背景:根据诊断阶段、乳腺癌亚型和年龄,评估初次诊断为非转移性乳腺癌的女性转移性复发比例:根据诊断分期、乳腺癌亚型、日历期和年龄,评估最初诊断为非转移性乳腺癌的女性转移性复发的比例:对 MEDLINE 和 Web of Science 数据库(2010 年 1 月至 2022 年 5 月)进行了系统检索。方法:对 MEDLINE 和 Web Science 数据库(2010 年 1 月至 2022 年 5 月)进行了系统检索,确定了报告非转移性乳腺癌女性患者远处转移性复发比例的研究,并提取了研究结果和特征。偏倚风险由两名审稿人独立评估。采用比例随机效应荟萃分析法计算汇总估计值和 95% 置信区间 (CI):主要分析共纳入193项研究,覆盖28万多名患者。随着中位随访时间的延长,转移性复发的汇总比例也在增加,从确诊后1-4年的12.2%(95% CI 10.5-14.0%)、5-9年的14.3%(95% CI 12.9-15.7%)到10年或更长时间的23.3%(95% CI 20.1-26.8)。地区间存在差异,综合估计值从欧洲的 11.0% (95% CI 8.5-13.7%) 到非洲的 26.4% (95% CI 16.7-37.4%)(随访 1-4 年)不等。与 2000 年以前诊断的研究(22.2%,95% CI 15.1-30.3)相比,2000 年以后诊断的研究(12.8%,95% CI 11.7-14.0)的复发比例更高。在1-4年的中位随访中,荷尔蒙受体阴性(15.2%,95% CI 12.0-18.7%)妇女的转移性复发比例高于受体阳性(9.6%,95% CI 6.2-13.6%)妇女的转移性复发比例,局部晚期(33.2%,95% CI 24.7-42.3%)妇女的转移性复发比例高于初诊时的早期疾病(4.8%,95% CI 2.5-7.8%)妇女的转移性复发比例。50岁以下人群的比例高于70岁以上人群,分别为18.6%(95% CI 15.9-21.4%)和13.3%(95% CI 9.2-18.0%)。所有荟萃分析的异质性都很高,因此在解释结果时应谨慎:结论:在晚期和较早诊断的患者中,转移性复发的比例较高,这强调了早期检测和治疗进步的重要性。随着全球乳腺癌幸存者人数的增加,研究和卫生政策应致力于及时诊断和获得有效的治疗和护理:研究注册号:PROCEMO CRD42022314500。
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引用次数: 0
Loss of chromosome cytoband 13q14.2 orchestrates breast cancer pathogenesis and drug response. 染色体细胞带 13q14.2 的缺失协调了乳腺癌的发病机制和药物反应。
IF 7.4 1区 医学 Q1 Medicine Pub Date : 2024-11-27 DOI: 10.1186/s13058-024-01924-4
Parastoo Shahrouzi, Youness Azimzade, Wioletta Brankiewicz-Kopcinska, Sugandha Bhatia, David Kunke, Derek Richard, Xavier Tekpli, Vessela N Kristensen, Pascal H G Duijf

Breast cancer (BCa) is a major global health challenge. The BCa genome often carries extensive somatic copy number alterations (CNAs), including gains/amplifications and losses/deletions. These CNAs significantly affect tumor development, drug response and patient survival. However, how individual CNAs contribute is mostly elusive. We identified loss of chromosome 13q14.2 as a key CNA in BCa, occurring in up to 63% of patients, depending on the subtype, and correlating with poor survival. Through multi-omics and in vitro analyses, we uncover a paradoxical role of 13q14.2 loss, promoting both cell cycle and pro-apoptotic pathways in cancer cells, while also associating with increased NK cell and macrophage populations in the tumor microenvironment. Notably, 13q14.2 loss increases BCa susceptibility to BCL2 inhibitors, both in vitro and in patient-derived xenografts. Thus, 13q14.2 loss could serve as a biomarker for BCa prognosis and treatment, potentially improving outcomes for BCa patients.

乳腺癌(BCa)是一项重大的全球性健康挑战。乳腺癌基因组通常带有广泛的体细胞拷贝数改变(CNA),包括增益/扩增和缺失/缺失。这些 CNAs 会严重影响肿瘤的发展、药物反应和患者生存。然而,单个 CNAs 是如何起作用的目前尚不清楚。我们发现13q14.2染色体缺失是BCa中的一个关键CNA,根据亚型的不同,多达63%的患者会出现该缺失,并与生存率低下相关。通过多组学和体外分析,我们发现了13q14.2缺失的矛盾作用,它促进了癌细胞的细胞周期和促凋亡途径,同时也与肿瘤微环境中NK细胞和巨噬细胞数量的增加有关。值得注意的是,13q14.2 缺失会增加 BCa 对 BCL2 抑制剂的敏感性,无论是在体外还是在患者衍生的异种移植物中。因此,13q14.2缺失可作为BCa预后和治疗的生物标志物,从而改善BCa患者的预后。
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引用次数: 0
Correction: Differentiating HER2-low and HER2-zero tumors with 21-gene multigene assay in 2,295 HR + HER2- breast cancer: a retrospective analysis. 更正:在 2,295 例 HR + HER2- 乳腺癌中使用 21 基因多基因检测法区分 HER2 低和 HER2 零肿瘤:一项回顾性分析。
IF 7.4 1区 医学 Q1 Medicine Pub Date : 2024-11-26 DOI: 10.1186/s13058-024-01929-z
Yoonwon Kook, Young-Jin Lee, Chihhao Chu, Ji Soo Jang, Seung Ho Baek, Soong June Bae, Yoon Jin Cha, Gyungyup Gong, Joon Jeong, Sae Byul Lee, Sung Gwe Ahn
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引用次数: 0
Plasma prolactin and postmenopausal breast cancer risk: a pooled analysis of four prospective cohort studies. 血浆催乳素与绝经后患乳腺癌的风险:对四项前瞻性队列研究的汇总分析。
IF 7.4 1区 医学 Q1 Medicine Pub Date : 2024-11-26 DOI: 10.1186/s13058-024-01922-6
Jacob K Kresovich, Catherine Guranich, Serena Houghton, Jing Qian, Micheal E Jones, Maegan E Boutot, Mitch Dowsett, A Heather Eliassen, Montserrat Garcia-Closas, Peter Kraft, Aaron Norman, Michael Pollak, Sabina Rinaldi, Bernard Rosner, Minouk J Schoemaker, Christopher Scott, Anthony J Swerdlow, Roger L Milne, Shelley S Tworoger, Celine M Vachon, Susan E Hankinson

Background: Prolactin, a hormone produced by the pituitary gland, regulates breast development and may contribute to breast cancer etiology. However, most epidemiologic studies of prolactin and breast cancer have been restricted to single, often small, study samples with limited exploration of effect modification.

Methods: The Biomarkers in Breast Cancer Risk Prediction consortium includes 8,279 postmenopausal women sampled from four prospective cohort studies, of whom 3,441 were diagnosed with invasive breast cancer after enrollment. Prolactin concentrations were measured for all study participants on plasma samples collected when all women were postmenopausal and before any breast cancer diagnosis using ELISA assays. Pooled, unconditional logistic regression models, adjusted for confounders, estimated odd ratios (OR) for associations of prolactin and postmenopausal breast cancer risk overall and stratified by breast cancer risk factors.

Results: Higher plasma prolactin concentrations were positively associated with postmenopausal breast cancer risk (> 13.2 ng/mL vs. < 7.9 ng/mL, OR: 1.20, 95% CI: 1.06, 1.36; P-trend < 0.001). Although associations did not appear to vary by time since blood draw or most breast cancer risk factors, associations were primarily observed in current users of postmenopausal hormones at blood draw (> 13.2 ng/mL vs. < 7.9 ng/mL, current users, OR: 1.58, 95% CI: 1.27, 1.96, P-trend < 0.001; non-current users, OR: 1.08, 95% CI: 0.93, 1.27, P-trend = 0.11; P-heterogeneity = 0.06).

Conclusion: Prolactin may be a risk factor for postmenopausal breast cancer, particularly in the context of postmenopausal hormone use. Investigations of prolactin interactions with other hormonal factors may further inform breast cancer etiology.

背景:催乳素是脑垂体分泌的一种激素,它能调节乳房发育,并可能是乳腺癌的病因之一。然而,大多数有关催乳素与乳腺癌的流行病学研究仅限于单个样本,而且通常样本较小,对效应修正的探讨有限:方法:乳腺癌风险预测生物标志物联盟包括从四项前瞻性队列研究中抽取的 8,279 名绝经后妇女,其中 3,441 人在入组后被诊断为浸润性乳腺癌。使用 ELISA 检测法测量了所有研究参与者在绝经后和乳腺癌诊断前采集的血浆样本中催乳素的浓度。在对混杂因素进行调整后,汇总的无条件逻辑回归模型估算了泌乳素与绝经后乳腺癌风险的总体相关性和按乳腺癌风险因素分层的奇数比(OR):结果:较高的血浆泌乳素浓度与绝经后乳腺癌风险呈正相关(> 13.2 纳克/毫升 vs. 13.2 纳克/毫升 vs. 13.2 纳克/毫升):泌乳素可能是绝经后乳腺癌的风险因素,尤其是在绝经后使用激素的情况下。调查泌乳素与其他激素因素的相互作用可进一步了解乳腺癌的病因。
{"title":"Plasma prolactin and postmenopausal breast cancer risk: a pooled analysis of four prospective cohort studies.","authors":"Jacob K Kresovich, Catherine Guranich, Serena Houghton, Jing Qian, Micheal E Jones, Maegan E Boutot, Mitch Dowsett, A Heather Eliassen, Montserrat Garcia-Closas, Peter Kraft, Aaron Norman, Michael Pollak, Sabina Rinaldi, Bernard Rosner, Minouk J Schoemaker, Christopher Scott, Anthony J Swerdlow, Roger L Milne, Shelley S Tworoger, Celine M Vachon, Susan E Hankinson","doi":"10.1186/s13058-024-01922-6","DOIUrl":"10.1186/s13058-024-01922-6","url":null,"abstract":"<p><strong>Background: </strong>Prolactin, a hormone produced by the pituitary gland, regulates breast development and may contribute to breast cancer etiology. However, most epidemiologic studies of prolactin and breast cancer have been restricted to single, often small, study samples with limited exploration of effect modification.</p><p><strong>Methods: </strong>The Biomarkers in Breast Cancer Risk Prediction consortium includes 8,279 postmenopausal women sampled from four prospective cohort studies, of whom 3,441 were diagnosed with invasive breast cancer after enrollment. Prolactin concentrations were measured for all study participants on plasma samples collected when all women were postmenopausal and before any breast cancer diagnosis using ELISA assays. Pooled, unconditional logistic regression models, adjusted for confounders, estimated odd ratios (OR) for associations of prolactin and postmenopausal breast cancer risk overall and stratified by breast cancer risk factors.</p><p><strong>Results: </strong>Higher plasma prolactin concentrations were positively associated with postmenopausal breast cancer risk (> 13.2 ng/mL vs. < 7.9 ng/mL, OR: 1.20, 95% CI: 1.06, 1.36; P-trend < 0.001). Although associations did not appear to vary by time since blood draw or most breast cancer risk factors, associations were primarily observed in current users of postmenopausal hormones at blood draw (> 13.2 ng/mL vs. < 7.9 ng/mL, current users, OR: 1.58, 95% CI: 1.27, 1.96, P-trend < 0.001; non-current users, OR: 1.08, 95% CI: 0.93, 1.27, P-trend = 0.11; P-heterogeneity = 0.06).</p><p><strong>Conclusion: </strong>Prolactin may be a risk factor for postmenopausal breast cancer, particularly in the context of postmenopausal hormone use. Investigations of prolactin interactions with other hormonal factors may further inform breast cancer etiology.</p>","PeriodicalId":49227,"journal":{"name":"Breast Cancer Research","volume":"26 1","pages":"169"},"PeriodicalIF":7.4,"publicationDate":"2024-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11590566/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142733951","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Longitudinal history of mammographic breast density and breast cancer risk by familial risk, menopausal status, and initial mammographic density level in a high risk cohort: a nested case-control study. 高风险队列中按家族风险、绝经状态和初始乳腺 X 线照相密度水平划分的乳腺 X 线照相密度纵向历史和乳腺癌风险:一项巢式病例对照研究。
IF 7.4 1区 医学 Q1 Medicine Pub Date : 2024-11-26 DOI: 10.1186/s13058-024-01917-3
Parisa Tehranifar, Erica J Lee Argov, Shweta Athilat, Yuyan Liao, Ying Wei, Alexandra J White, Katie M O'Brien, Dale P Sandler, Mary Beth Terry

Background: Elevated mammographic density is associated with increased breast cancer risk. However, the contribution of longitudinal changes in mammographic density to breast cancer risk beyond initial mammographic density levels, considering familial breast cancer risk and menopausal status, remains uncertain but holds important clinical implications.

Methods: In a nested case-control study within the Sister Study (323 cases, 899 controls; 12,095 mammograms), a cohort enriched for family history of breast cancer, we examined case-control status in relation to the largest annual change in percent density and dense area using mammograms available spanning 5.4 years, on average, using multivariable logistic regression and to the rate of mammographic density change using linear mixed-effects models. We considered effect modification by: mammographic density level of the earlier mammogram, the extent of family history, Breast and Ovarian Analysis of Disease Incidence and Carrier Estimation (BOADICEA) risk strata, and menopausal status.

Results: Cases (diagnosed < 60 years) had greater initial percent density and dense area levels and a slower rate of decline in dense area than controls. Women with stable mammographic density (≤ 10% annual change) had an increased breast cancer risk as compared with women whose largest mammographic density change was > 10% annual decline (e.g., Odds Ratio (OR) 2.34, 95% Confidence Interval (CI) 1.63-3.37 for dense area). Increasing vs. decreasing dense area was also associated with elevated risk, especially in women with the highest dense area levels at the earlier mammogram (OR: 2.56, 95%CI 1.50-4.36). Although generally similar across menopausal and familial risk categories, the associations of MD change with risk appeared stronger in pre-menopausal and lower-risk women.

Conclusions: Women who maintain higher levels of mammographic density (i.e. do not decrease over time) or have increasing mammographic density over time have a higher risk of subsequent breast cancer than women with high mammographic density that decreases over time. These findings suggest potential for incorporating mammographic density trajectories in clinical risk assessment, and the importance of additional breast cancer monitoring in women not experiencing declines in mammographic density over time.

背景:乳腺X线摄影密度升高与乳腺癌风险增加有关。然而,考虑到家族性乳腺癌风险和绝经状态,乳腺X线照相密度的纵向变化对乳腺癌风险的贡献超出了最初的乳腺X线照相密度水平,这一点仍不确定,但具有重要的临床意义:在姐妹研究(Sister Study)(323 例病例,899 例对照;12,095 张乳房 X 光照片)(一个富含乳腺癌家族史的队列)中进行的一项嵌套病例对照研究中,我们使用多变量逻辑回归分析了病例对照状态与平均 5.4 年乳房 X 光照片密度百分比和致密区域最大年度变化的关系,并使用线性混合效应模型分析了乳房 X 光照片密度变化率的关系。我们考虑了以下因素对效果的影响:早期乳房 X 线照片的乳腺密度水平、家族史程度、乳腺和卵巢疾病发病率分析及载体估计(BOADICEA)风险分层以及绝经状态:病例(确诊病例数每年下降 10%(例如,致密区的患病率比(OR)为 2.34,95% 置信区间(CI)为 1.63-3.37)。致密区增大与缩小也与风险升高有关,尤其是在早期乳房 X 光检查中致密区水平最高的妇女(OR:2.56,95%CI 1.50-4.36)。虽然绝经期和家族风险类别的情况基本相似,但绝经前和低风险妇女的MD变化与风险的关联性似乎更强:结论:乳腺X线摄影密度保持较高水平(即不随时间推移而降低)或随时间推移乳腺X线摄影密度不断增加的妇女,其罹患乳腺癌的风险高于乳腺X线摄影密度较高但随时间推移而降低的妇女。这些研究结果表明,将乳腺X线照相密度轨迹纳入临床风险评估是有潜力的,而且对于乳腺X线照相密度没有随时间推移而下降的妇女,进行额外的乳腺癌监测也很重要。
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引用次数: 0
Toll-Like receptor 3-mediated interferon-β production is suppressed by oncostatin m and a broader epithelial-mesenchymal transition program. Toll-Like 受体 3 介导的干扰素-β 生成受到 oncostatin m 和更广泛的上皮-间质转化程序的抑制。
IF 7.4 1区 医学 Q1 Medicine Pub Date : 2024-11-26 DOI: 10.1186/s13058-024-01918-2
Noah M Chernosky, Ilaria Tamagno, Kelsey L Polak, E Ricky Chan, Xueer Yuan, Mark W Jackson

Background: Patients with Triple Negative Breast Cancer (TNBC) currently lack targeted therapies, and consequently face higher mortality rates when compared to patients with other breast cancer subtypes. The tumor microenvironment (TME) cytokine Oncostatin M (OSM) reprograms TNBC cells to a more stem-like/mesenchymal state, conferring aggressive cancer cell properties such as enhanced migration and invasion, increased tumor-initiating capacity, and intrinsic resistance to the current standards of care. In contrast to OSM, Interferon-β (IFN-β) promotes a more differentiated, epithelial cell phenotype in addition to its role as an activator of anti-tumor immunity. Importantly, OSM suppresses the production of IFN-β, although the mechanism of IFN-β suppression has not yet been elucidated.

Methods: IFN-β production and downstream autocrine signaling were assessed via quantitative real-time PCR (qRT-PCR) and Western blotting in TNBC cells following exposure to OSM. RNA-sequencing (RNA-seq) was used to assess an IFN-β metagene signature, and to assess the expression of innate immune sensors, which are upstream activators of IFN-β. Cell migration was assessed using an in vitro chemotaxis assay. Additionally, TNBC cells were exposed to TGF-β1, Snail, and Zeb1, and IFN-β production and downstream autocrine signaling were assessed via RNA-seq, qRT-PCR, and Western blotting.

Results: Here, we identify the repression of Toll-like Receptor 3 (TLR3), an innate immune sensor, as the key molecular event linking OSM signaling and the repression of IFN-β transcription, production, and autocrine IFN signaling. Moreover, we demonstrate that additional epithelial-mesenchymal transition-inducing factors, such as TGF-β1, Snail, and Zeb1, similarly suppress TLR3-mediated IFN-β production and signaling.

Conclusions: Our findings provide a novel insight into the regulation of TLR3 and IFN-β production in TNBC cells, which are known indicators of treatment responses to DNA-damaging therapies. Furthermore, strategies to stimulate TLR3 in order to increase IFN-β within the TME may be ineffective in stem-like/mesenchymal cells, as TLR3 is strongly repressed. Rather, we propose that therapies targeting OSM or OSM receptor would reverse the stem-like/mesenchymal program and restore TLR3-mediated IFN-β production within the TME, facilitating improved responses to current therapies.

背景:三阴性乳腺癌(TNBC)患者目前缺乏靶向疗法,因此死亡率高于其他亚型乳腺癌患者。肿瘤微环境(TME)细胞因子Oncostatin M(OSM)可将TNBC细胞重编程为更像干细胞/间充质细胞的状态,使癌细胞具有侵袭性,如增强迁移和侵袭、提高肿瘤诱发能力以及对当前治疗标准的内在抵抗力。与 OSM 相反,干扰素-β(IFN-β)除了作为抗肿瘤免疫激活剂的作用外,还能促进更分化的上皮细胞表型。重要的是,OSM 可抑制 IFN-β 的产生,但抑制 IFN-β 的机制尚未阐明:方法:通过定量实时 PCR(qRT-PCR)和 Western 印迹法评估暴露于 OSM 后 TNBC 细胞中 IFN-β 的产生和下游自分泌信号。RNA测序(RNA-seq)用于评估IFN-β元基因特征,并评估作为IFN-β上游激活剂的先天性免疫传感器的表达。细胞迁移采用体外趋化试验进行评估。此外,将 TNBC 细胞暴露于 TGF-β1、Snail 和 Zeb1,并通过 RNA-seq、qRT-PCR 和 Western 印迹分析评估 IFN-β 的产生和下游自分泌信号:结果:在这里,我们发现先天性免疫传感器 Toll 样受体 3(TLR3)的抑制是连接 OSM 信号与 IFN-β 转录、产生和自分泌 IFN 信号抑制的关键分子事件。此外,我们还证明了其他上皮-间质转化诱导因子,如 TGF-β1、Snail 和 Zeb1,也同样抑制 TLR3 介导的 IFN-β 的产生和信号转导:我们的研究结果为TNBC细胞中TLR3和IFN-β产生的调控提供了新的视角,而TLR3和IFN-β的产生是DNA损伤疗法治疗反应的已知指标。此外,刺激TLR3以增加TME内IFN-β的策略在类干细胞/间充质细胞中可能无效,因为TLR3受到强烈抑制。相反,我们建议以OSM或OSM受体为靶点的疗法将逆转干样/间质细胞程序,恢复TLR3介导的TME内IFN-β的产生,从而改善对当前疗法的反应。
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引用次数: 0
A systematic review of candidate genes and their relevant pathways for metastasis among adults diagnosed with breast cancer. 对已确诊的成人乳腺癌转移候选基因及其相关通路进行系统回顾。
IF 7.4 1区 医学 Q1 Medicine Pub Date : 2024-11-26 DOI: 10.1186/s13058-024-01914-6
Gina M Gehling, Miad Alfaqih, Lisiane Pruinelli, Angela Starkweather, Jennifer R Dungan

Background: Presently incurable, metastatic breast cancer is estimated to occur in as many as 30% of those diagnosed with early-stage breast cancer. Timely and accurate identification of those at risk for developing metastasis using validated biomarkers has the potential to have profound impact on overall survival rates. Our primary goal was to conduct a systematic review and synthesize the existing body of scientific knowledge on the candidate genes and their respective single nucleotide polymorphisms associated with metastasis-related outcomes among patients diagnosed with breast cancer. This knowledge is critical to inform future hypothesis-driven and validation research aimed at enhancing clinical decision-making for breast cancer patients.

Methods: Using PRISMA guidelines, literature searches were conducted on September 13th, 2023, using PubMed and Embase databases. The systematic review protocol was registered with INPLASY (DOI: https://doi.org/10.37766/inplasy2024.8.0014 ). Covidence software was used to facilitate the screening and article extraction processes. Peer-reviewed articles were selected if authors reported on single nucleotide polymorphisms directly associated with metastasis among adults diagnosed with breast cancer.

Findings: We identified 451 articles after 44 duplicates were removed resulting in 407 articles to be screened for study inclusion. Three reviewers completed the article screening process which resulted in 86 articles meeting the study inclusion criteria. Sampling varied across studies with the majority utilizing a case-control design (n = 75, 87.2%), with sample sizes ranging from 23 to 1,017 participants having mean age 50.65 ± 4.50 (min-max: 20-75). The synthesis of this internationally generated evidence revealed that the scientific area on the underlying biological contributions to breast cancer metastasis remains predominantly exploratory in nature (n = 74, 86%). Of the 12 studies with reported power analyses, only 9 explicitly stated the power values which ranged from 47.88 to 99%.

Discussion: Understanding the underlying biological mechanisms contributing to metastasis is a critical component for precision oncological therapeutics and treatment approaches. Current evidence investigating the contribution of SNPs to the development of metastasis is characterized by underpowered candidate gene studies. To inform individualized precision health practices and improve breast cancer survival outcomes, future hypothesis-driven research is needed to replicate these associations in larger, more diverse datasets.

背景:据估计,在确诊为早期乳腺癌的患者中,多达 30% 的患者会发生转移性乳腺癌,目前这种疾病仍无法治愈。利用经过验证的生物标志物及时准确地识别有转移风险的患者,有可能对总体生存率产生深远影响。我们的主要目标是对候选基因及其各自的单核苷酸多态性与确诊乳腺癌患者的转移相关结果有关的现有科学知识进行系统回顾和综合。这些知识对未来以假设为导向的验证研究至关重要,旨在提高乳腺癌患者的临床决策水平:根据 PRISMA 指南,于 2023 年 9 月 13 日使用 PubMed 和 Embase 数据库进行了文献检索。系统综述方案已在 INPLASY 上注册(DOI: https://doi.org/10.37766/inplasy2024.8.0014 )。Covidence 软件用于筛选和提取文章。如果作者报告的单核苷酸多态性与确诊为乳腺癌的成年人的转移直接相关,则选择同行评审文章:在删除 44 篇重复文章后,我们确定了 451 篇文章,最终筛选出 407 篇文章用于纳入研究。三名审稿人完成了文章筛选过程,最终有 86 篇文章符合研究纳入标准。不同研究的取样方式各不相同,大多数采用病例对照设计(n = 75,87.2%),样本量从 23 到 1,017 人不等,平均年龄为 50.65 ± 4.50(最小-最大:20-75)。对这些国际上产生的证据进行综合后发现,关于乳腺癌转移的基本生物学作用的科学领域仍以探索性研究为主(n = 74,86%)。在 12 项报告了功率分析的研究中,只有 9 项明确说明了功率值,功率值从 47.88% 到 99% 不等:讨论:了解导致转移的潜在生物学机制是肿瘤精准疗法和治疗方法的关键组成部分。目前调查SNPs对转移发展的贡献的证据主要是候选基因研究的不足。为了为个体化精准医疗实践提供信息并改善乳腺癌的生存结果,未来需要以假设为驱动的研究,在更大、更多样化的数据集中复制这些关联。
{"title":"A systematic review of candidate genes and their relevant pathways for metastasis among adults diagnosed with breast cancer.","authors":"Gina M Gehling, Miad Alfaqih, Lisiane Pruinelli, Angela Starkweather, Jennifer R Dungan","doi":"10.1186/s13058-024-01914-6","DOIUrl":"10.1186/s13058-024-01914-6","url":null,"abstract":"<p><strong>Background: </strong>Presently incurable, metastatic breast cancer is estimated to occur in as many as 30% of those diagnosed with early-stage breast cancer. Timely and accurate identification of those at risk for developing metastasis using validated biomarkers has the potential to have profound impact on overall survival rates. Our primary goal was to conduct a systematic review and synthesize the existing body of scientific knowledge on the candidate genes and their respective single nucleotide polymorphisms associated with metastasis-related outcomes among patients diagnosed with breast cancer. This knowledge is critical to inform future hypothesis-driven and validation research aimed at enhancing clinical decision-making for breast cancer patients.</p><p><strong>Methods: </strong>Using PRISMA guidelines, literature searches were conducted on September 13th, 2023, using PubMed and Embase databases. The systematic review protocol was registered with INPLASY (DOI: https://doi.org/10.37766/inplasy2024.8.0014 ). Covidence software was used to facilitate the screening and article extraction processes. Peer-reviewed articles were selected if authors reported on single nucleotide polymorphisms directly associated with metastasis among adults diagnosed with breast cancer.</p><p><strong>Findings: </strong>We identified 451 articles after 44 duplicates were removed resulting in 407 articles to be screened for study inclusion. Three reviewers completed the article screening process which resulted in 86 articles meeting the study inclusion criteria. Sampling varied across studies with the majority utilizing a case-control design (n = 75, 87.2%), with sample sizes ranging from 23 to 1,017 participants having mean age 50.65 ± 4.50 (min-max: 20-75). The synthesis of this internationally generated evidence revealed that the scientific area on the underlying biological contributions to breast cancer metastasis remains predominantly exploratory in nature (n = 74, 86%). Of the 12 studies with reported power analyses, only 9 explicitly stated the power values which ranged from 47.88 to 99%.</p><p><strong>Discussion: </strong>Understanding the underlying biological mechanisms contributing to metastasis is a critical component for precision oncological therapeutics and treatment approaches. Current evidence investigating the contribution of SNPs to the development of metastasis is characterized by underpowered candidate gene studies. To inform individualized precision health practices and improve breast cancer survival outcomes, future hypothesis-driven research is needed to replicate these associations in larger, more diverse datasets.</p>","PeriodicalId":49227,"journal":{"name":"Breast Cancer Research","volume":"26 1","pages":"165"},"PeriodicalIF":7.4,"publicationDate":"2024-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11590482/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142733946","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Characterization of novel small molecule inhibitors of estrogen receptor-activation function 2 (ER-AF2). 新型雌激素受体激活功能 2 (ER-AF2) 小分子抑制剂的特征。
IF 7.4 1区 医学 Q1 Medicine Pub Date : 2024-11-26 DOI: 10.1186/s13058-024-01926-2
Jane Foo, Francesco Gentile, Shabnam Massah, Helene Morin, Kriti Singh, Joseph Lee, Jason Smith, Fuqiang Ban, Eric LeBlanc, Robert Young, Natalie Strynadka, Nada Lallous, Artem Cherkasov

Up to 40% of patients with estrogen receptor (ER)-positive breast cancer will develop resistance against the majority of current ER-directed therapies. Resistance can arise through various mechanisms such as increased expression levels of coregulators, and key mutations acquired in the receptor's ligand binding domain rendering it constitutively active. To overcome these resistance mechanisms, we explored targeting the ER Activation Function 2 (AF2) site, which is essential for coactivator binding and activation. Using artificial intelligence and the deep docking methodology, we virtually screened > 1 billion small molecules and identified 290 potential AF2 binders that were then characterized and validated through an iterative screening pipeline of cell-based and cell-free assays. We ranked the compounds based on their ability to reduce the transcriptional activity of the estrogen receptor and the viability of ER-positive breast cancer cells. We identified a lead compound, VPC-260724, which inhibits ER activity at low micromolar range. We confirmed its direct binding to the ER-AF2 site through a PGC1α peptide displacement experiment. Using proximity ligation assays, we showed that VPC-260724 disrupts the interaction between ER-AF2 and the coactivator SRC-3 and reduces the expression of ER target genes in various breast cancer models including the tamoxifen resistant cell line TamR3. In conclusion, we developed a novel ER-AF2 binder, VPC-260724, which shows antiproliferative activity in ER-positive breast cancer models. The use of an ER-AF2 inhibitor in combination with current treatments may provide a novel complementary therapeutic approach to target treatment resistance in ER-positive breast cancer.

多达 40% 的雌激素受体(ER)阳性乳腺癌患者会对目前大多数 ER 定向疗法产生抗药性。耐药性的产生有多种机制,如核心调节因子的表达水平升高、受体配体结合域发生关键突变使其具有组成性活性等。为了克服这些抗药性机制,我们探索了靶向ER激活功能2(AF2)位点的方法,该位点对于辅助激活剂的结合和激活至关重要。利用人工智能和深度对接方法,我们对超过 10 亿个小分子进行了虚拟筛选,确定了 290 种潜在的 AF2 结合剂,然后通过基于细胞和无细胞试验的迭代筛选管道对这些结合剂进行了表征和验证。我们根据化合物降低雌激素受体转录活性和 ER 阳性乳腺癌细胞活力的能力对其进行了排序。我们发现了一种先导化合物 VPC-260724,它能在较低的微摩尔范围内抑制 ER 活性。我们通过 PGC1α 肽移位实验证实了它与 ER-AF2 位点的直接结合。通过近接实验,我们发现 VPC-260724 能破坏 ER-AF2 与辅助激活剂 SRC-3 之间的相互作用,并降低 ER 靶基因在各种乳腺癌模型(包括他莫昔芬耐药细胞系 TamR3)中的表达。总之,我们开发出了一种新型ER-AF2结合剂VPC-260724,它在ER阳性乳腺癌模型中显示出抗增殖活性。将ER-AF2抑制剂与目前的治疗方法结合使用,可为针对ER阳性乳腺癌耐药性的治疗提供一种新的补充治疗方法。
{"title":"Characterization of novel small molecule inhibitors of estrogen receptor-activation function 2 (ER-AF2).","authors":"Jane Foo, Francesco Gentile, Shabnam Massah, Helene Morin, Kriti Singh, Joseph Lee, Jason Smith, Fuqiang Ban, Eric LeBlanc, Robert Young, Natalie Strynadka, Nada Lallous, Artem Cherkasov","doi":"10.1186/s13058-024-01926-2","DOIUrl":"10.1186/s13058-024-01926-2","url":null,"abstract":"<p><p>Up to 40% of patients with estrogen receptor (ER)-positive breast cancer will develop resistance against the majority of current ER-directed therapies. Resistance can arise through various mechanisms such as increased expression levels of coregulators, and key mutations acquired in the receptor's ligand binding domain rendering it constitutively active. To overcome these resistance mechanisms, we explored targeting the ER Activation Function 2 (AF2) site, which is essential for coactivator binding and activation. Using artificial intelligence and the deep docking methodology, we virtually screened > 1 billion small molecules and identified 290 potential AF2 binders that were then characterized and validated through an iterative screening pipeline of cell-based and cell-free assays. We ranked the compounds based on their ability to reduce the transcriptional activity of the estrogen receptor and the viability of ER-positive breast cancer cells. We identified a lead compound, VPC-260724, which inhibits ER activity at low micromolar range. We confirmed its direct binding to the ER-AF2 site through a PGC1α peptide displacement experiment. Using proximity ligation assays, we showed that VPC-260724 disrupts the interaction between ER-AF2 and the coactivator SRC-3 and reduces the expression of ER target genes in various breast cancer models including the tamoxifen resistant cell line TamR3. In conclusion, we developed a novel ER-AF2 binder, VPC-260724, which shows antiproliferative activity in ER-positive breast cancer models. The use of an ER-AF2 inhibitor in combination with current treatments may provide a novel complementary therapeutic approach to target treatment resistance in ER-positive breast cancer.</p>","PeriodicalId":49227,"journal":{"name":"Breast Cancer Research","volume":"26 1","pages":"168"},"PeriodicalIF":7.4,"publicationDate":"2024-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11590367/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142733947","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Breast Cancer Research
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