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Research progress on vasculogenic mimicry in colorectal cancer: mechanisms and therapeutic. 结直肠癌血管生成模拟的研究进展:机制与治疗。
IF 2.2 4区 生物学 Q3 CELL BIOLOGY Pub Date : 2026-01-27 DOI: 10.1186/s13008-025-00171-z
Jian Zewei, Zhao Haiyan

Colorectal cancer (CRC) is the third most common malignant tumor worldwide and is characterized by high incidence and mortality rates. In the chemotherapeutic treatment of CRC, antiangiogenic therapy is utilized throughout the entire disease course, particularly for highly metastatic tumors. However, studies have reported that resistance to current antiangiogenic therapies often develops, leading to suboptimal clinical outcomes. Vasculogenic mimicry (VM) represents a novel tumor blood supply mechanism that is distinct from traditional endothelial cell-dependent vasculature. VM channels are composed solely of tumor cells and extracellular basement membranes, emerge within malignant tumors requiring blood perfusion, and have been identified in numerous solid tumors. Research indicates that tumors exhibiting VM demonstrate greater proliferative, invasive, and metastatic potential, along with poorer prognosis, than those without VM. Additionally, studies suggest that VM contributes to the limited efficacy and resistance observed with antiangiogenic drugs in clinical practice. Thus, targeting VM is crucial in oncology, especially in CRC. Recent advances have been made in anti-VM drug therapy for CRC. Moving forward, combining VM-targeted strategies with conventional antiangiogenic therapies targeting endothelial cells may represent a promising new direction in CRC treatment. This review summarizes current insights into the mechanisms of VM in CRC and its therapeutic advancements, aiming to provide novel perspectives for clinical management.

结直肠癌(CRC)是世界上第三大最常见的恶性肿瘤,其特点是发病率和死亡率高。在结直肠癌的化疗治疗中,抗血管生成治疗贯穿于整个病程,特别是对于高转移性肿瘤。然而,研究报告称,目前的抗血管生成疗法经常产生耐药性,导致不理想的临床结果。血管生成模拟(VM)代表了一种新的肿瘤血液供应机制,与传统的内皮细胞依赖性血管系统不同。VM通道仅由肿瘤细胞和细胞外基底膜组成,出现在需要血液灌注的恶性肿瘤中,并已在许多实体肿瘤中发现。研究表明,与不存在VM的肿瘤相比,具有VM的肿瘤具有更大的增殖、侵袭和转移潜力,预后更差。此外,研究表明,VM是临床抗血管生成药物疗效有限和耐药的原因之一。因此,靶向VM在肿瘤学中至关重要,尤其是在结直肠癌中。近年来,抗vm药物治疗结直肠癌取得了新的进展。展望未来,将vm靶向策略与传统的靶向内皮细胞的抗血管生成治疗相结合可能是CRC治疗的一个有希望的新方向。本文综述了目前对结直肠癌中VM机制的认识及其治疗进展,旨在为临床管理提供新的视角。
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引用次数: 0
MiR-124-3p inhibits stomach adenocarcinoma progression by targeting AHR to induce autophagy. MiR-124-3p通过靶向AHR诱导自噬抑制胃腺癌进展。
IF 2.2 4区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-12-31 DOI: 10.1186/s13008-025-00175-9
Qian Wan, Siwei Wang, Wei Dong, Xinyi Liu, Xiangyun Li, Chuan Liu, Shanling Xu

Background: MicroRNA-124-3p (miR-124-3p) has been widely reported as an important tumor-suppressive regulator in multiple malignancies. Nevertheless, its precise biological function in stomach adenocarcinoma (STAD) remains insufficiently clarified.

Methods: We applied large-scale bioinformatics interrogation of The Cancer Genome Atlas (TCGA) STAD cohort, combined with in vitro cellular assays and in vivo xenograft experiments, to explore both the biological significance and molecular mechanisms of miR-124-3p in STAD progression.

Results: MiR-124-3p expression was significantly downregulated in STAD tissues and correlated with advanced pathological stage, poor prognosis, and reduced survival outcomes. Functional investigations confirmed that miR-124-3p directly interacts with the 3'-UTR of the aryl hydrocarbon receptor (AHR) mRNA, suppressing its expression and inducing autophagy. This regulation led to impaired proliferation, migration, and invasiveness of STAD cells. Restoration of AHR expression reversed these tumor-suppressive effects. Moreover, in vivo delivery of miR-124-3p inhibited tumor growth and mitigated cancer-induced cachexia in nude mice.

Conclusion: These findings establish miR-124-3p as a key suppressor of STAD progression via AHR-mediated autophagy, underscoring its promise as both a diagnostic biomarker and a therapeutic candidate.

背景:MicroRNA-124-3p (miR-124-3p)已被广泛报道为多种恶性肿瘤中重要的肿瘤抑制调节因子。然而,其在胃腺癌(STAD)中的确切生物学功能尚不清楚。方法:我们应用Cancer Genome Atlas (TCGA) STAD队列的大规模生物信息学研究,结合体外细胞实验和体内异种移植实验,探讨miR-124-3p在STAD进展中的生物学意义和分子机制。结果:MiR-124-3p在STAD组织中表达显著下调,与病理分期晚期、预后差、生存结局降低相关。功能研究证实,miR-124-3p直接与芳烃受体(AHR) mRNA的3'-UTR相互作用,抑制其表达并诱导自噬。这种调控导致STAD细胞的增殖、迁移和侵袭性受损。AHR表达的恢复逆转了这些肿瘤抑制作用。此外,在裸鼠体内递送miR-124-3p抑制肿瘤生长并减轻癌症诱导的恶病质。结论:这些发现证实了miR-124-3p是通过ahr介导的自噬抑制STAD进展的关键因子,强调了其作为诊断生物标志物和治疗候选物的前景。
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引用次数: 0
FOXP3-activated KCNMB2-AS1 promotes clear cell renal cell carcinoma through the miR-744-3p/CD1D axis. foxp3激活的KCNMB2-AS1通过miR-744-3p/CD1D轴促进透明细胞肾细胞癌。
IF 2.2 4区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-12-19 DOI: 10.1186/s13008-025-00177-7
Geng Huang, Dingwen Gui, Yankuang Guo, Shuai Luo, Zuwei Xu

Background: Long noncoding RNAs (lncRNAs) are key regulators in cancer progression. Among them, KCNMB2 antisense RNA 1 (KCNMB2-AS1) has been identified as an oncogenic lncRNA in several tumor types; however, its role in clear-cell renal cell carcinoma (ccRCC) remains largely unexplored. This study aimed to elucidate the expression profile, functional significance, and underlying molecular mechanisms of KCNMB2-AS1 in ccRCC.

Methods: The expression of KCNMB2-AS1 in ccRCC tissues and cell lines was analyzed using publicly available datasets, quantitative real-time PCR, and Western blotting. Functional assays including Cell Counting Kit-8, colony formation, wound healing, and Transwell migration/invasion tests along with in vivo xenograft experiments were performed to assess its biological effects. Mechanistic studies, including luciferase reporter, chromatin immunoprecipitation (ChIP), RNA immunoprecipitation (RIP), and rescue assays, were conducted to verify the regulatory interactions among KCNMB2-AS1, forkhead box protein 3 (FOXP3), microRNA-744-3p (miR-744-3p), and cluster of differentiation 1D (CD1D).

Results: KCNMB2-AS1 expression was markedly elevated in ccRCC tissues compared to adjacent normal tissues, and its high expression was significantly associated with advanced tumor stage, presence of distant metastasis, and poor overall survival. Silencing KCNMB2-AS1 markedly suppressed ccRCC cell proliferation, migration, and invasion in vitro, accompanied by reduced epithelial-mesenchymal transition marker expression. Consistent with these findings, xenograft experiments confirmed that KCNMB2-AS1 knockdown attenuated tumor growth in vivo, while its overexpression promoted aggressive tumor behavior. Mechanistically, FOXP3 directly bound to the promoter region of KCNMB2-AS1, activating its expression transcriptionally. KCNMB2-AS1 acted as a molecular sponge for miR-744-3p, thereby relieving its inhibitory effect on CD1D expression. Rescue assays demonstrated that restoring CD1D expression counteracted the inhibitory phenotypes resulting from KCNMB2-AS1 silencing.

Conclusion: KCNMB2-AS1 serves as an oncogenic lncRNA in ccRCC, functioning through a FOXP3/KCNMB2-AS1/miR-744-3p/CD1D signaling axis, thereby revealing a novel molecular pathway that contributes to ccRCC progression.

背景:长链非编码rna (lncRNAs)是癌症进展的关键调控因子。其中,KCNMB2反义RNA 1 (KCNMB2- as1)已被鉴定为几种肿瘤类型中的致癌lncRNA;然而,其在透明细胞肾细胞癌(ccRCC)中的作用在很大程度上仍未被探索。本研究旨在阐明KCNMB2-AS1在ccRCC中的表达谱、功能意义及其潜在的分子机制。方法:利用公开数据集、实时荧光定量PCR和Western blotting分析KCNMB2-AS1在ccRCC组织和细胞系中的表达。功能分析包括细胞计数试剂盒-8、菌落形成、伤口愈合、Transwell迁移/侵袭试验以及体内异种移植物实验,以评估其生物学效应。机制研究包括荧光素酶报告基因、染色质免疫沉淀(ChIP)、RNA免疫沉淀(RIP)和救援试验,以验证KCNMB2-AS1、叉头盒蛋白3 (FOXP3)、microRNA-744-3p (miR-744-3p)和分化聚类1D (CD1D)之间的调控相互作用。结果:与癌旁正常组织相比,KCNMB2-AS1在ccRCC组织中的表达明显升高,且其高表达与肿瘤分期晚期、远处转移、总生存期差相关。沉默KCNMB2-AS1可显著抑制体外ccRCC细胞的增殖、迁移和侵袭,同时降低上皮-间质转化标志物的表达。与这些发现一致的是,异种移植实验证实,KCNMB2-AS1敲低可以减缓体内肿瘤的生长,而其过表达则会促进肿瘤的侵袭性行为。机制上,FOXP3直接结合KCNMB2-AS1的启动子区域,激活其转录表达。KCNMB2-AS1作为miR-744-3p的分子海绵,从而缓解其对CD1D表达的抑制作用。修复实验表明,恢复CD1D表达可以抵消KCNMB2-AS1沉默导致的抑制性表型。结论:KCNMB2-AS1在ccRCC中作为一种致癌lncRNA,通过FOXP3/KCNMB2-AS1/miR-744-3p/CD1D信号轴发挥作用,从而揭示了一种促进ccRCC进展的新分子途径。
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引用次数: 0
Role of LINC00332 in colorectal cancer progression and paclitaxel resistance. LINC00332在结直肠癌进展和紫杉醇耐药中的作用
IF 2.2 4区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-12-17 DOI: 10.1186/s13008-025-00176-8
Meysam Moghbeli, Negin Taghehchian, Mahsa Palizkaran Yazdi, Mohammad Reza Abbaszadegan

Background: Colorectal cancer (CRC) is the third most common cancer and a leading cause of cancer deaths. Standard therapeutic management is faced with challenges like treatment resistance and late-stage diagnosis, highlighting a need for better diagnosis. LncRNAs are crucial in CRC progression and may serve as non-invasive biomarkers. For the first time, this study explores LINC00332 potential as a therapeutic and diagnostic marker in CRC.

Methods: Eighty fresh normal and tumor tissues were enrolled to evaluate the levels of LINC00332 expression using Real-time PCR method. LINC00332 ectopic expression was also done to evaluate its role in drug resistance and cell migration in HCT116 cells.

Results: Ectopic expression of LINC00332 significantly induced NOTCH and WNT pathways in HCT116 cells. LINC00332 promoted EMT process through up regulation of Vimentin, CDH2, Snail, ZEB2, Slug, MMP10, and MMP3 while down regulation of CDH1 and OCLUDIN in HCT116 cells. LINC00332 significantly induced the HCT116 cell migration and paclitaxel (PTX) resistance in HCT116 cells (p < 0.0001). There was significant up regulation of LINC00332 in CRC clinical samples compared to normal margins (p = 0.042). There was significant up regulation of LINC00332 in stage I/II tumors that was located in transverse and left colon in comparison to right colon (p = 0.03). Tumors with perineural invasion had significant LINC00332 up regulation compared with negative ones in CRC patients (p = 0.02).

Conclusions: LINC00332 promotes PTX resistance and EMT in CRC via WNT and NOTCH pathways activation. It can also be suggested as a potential diagnostic marker in early-stage CRC patients. Targeting LINC00332 may enhance PTX response, warranting further studies for therapeutic application.

背景:结直肠癌(CRC)是第三大常见癌症,也是癌症死亡的主要原因。标准治疗管理面临治疗耐药和晚期诊断等挑战,需要更好的诊断。lncrna在结直肠癌的进展中是至关重要的,可以作为非侵入性的生物标志物。本研究首次探索了LINC00332作为结直肠癌治疗和诊断标志物的潜力。方法:采用Real-time PCR法检测80例新鲜正常和肿瘤组织中LINC00332的表达水平。在HCT116细胞中进行了LINC00332异位表达,以评估其在耐药和细胞迁移中的作用。结果:异位表达LINC00332显著诱导HCT116细胞NOTCH和WNT通路。LINC00332在HCT116细胞中通过上调Vimentin、CDH2、Snail、ZEB2、Slug、MMP10和MMP3促进EMT过程,下调CDH1和OCLUDIN。结论:LINC00332通过激活WNT和NOTCH通路促进CRC中PTX耐药和EMT的发生。它也可以作为早期结直肠癌患者的潜在诊断标志物。靶向LINC00332可能会增强PTX的应答,值得进一步研究用于治疗应用。
{"title":"Role of LINC00332 in colorectal cancer progression and paclitaxel resistance.","authors":"Meysam Moghbeli, Negin Taghehchian, Mahsa Palizkaran Yazdi, Mohammad Reza Abbaszadegan","doi":"10.1186/s13008-025-00176-8","DOIUrl":"10.1186/s13008-025-00176-8","url":null,"abstract":"<p><strong>Background: </strong>Colorectal cancer (CRC) is the third most common cancer and a leading cause of cancer deaths. Standard therapeutic management is faced with challenges like treatment resistance and late-stage diagnosis, highlighting a need for better diagnosis. LncRNAs are crucial in CRC progression and may serve as non-invasive biomarkers. For the first time, this study explores LINC00332 potential as a therapeutic and diagnostic marker in CRC.</p><p><strong>Methods: </strong>Eighty fresh normal and tumor tissues were enrolled to evaluate the levels of LINC00332 expression using Real-time PCR method. LINC00332 ectopic expression was also done to evaluate its role in drug resistance and cell migration in HCT116 cells.</p><p><strong>Results: </strong>Ectopic expression of LINC00332 significantly induced NOTCH and WNT pathways in HCT116 cells. LINC00332 promoted EMT process through up regulation of Vimentin, CDH2, Snail, ZEB2, Slug, MMP10, and MMP3 while down regulation of CDH1 and OCLUDIN in HCT116 cells. LINC00332 significantly induced the HCT116 cell migration and paclitaxel (PTX) resistance in HCT116 cells (p < 0.0001). There was significant up regulation of LINC00332 in CRC clinical samples compared to normal margins (p = 0.042). There was significant up regulation of LINC00332 in stage I/II tumors that was located in transverse and left colon in comparison to right colon (p = 0.03). Tumors with perineural invasion had significant LINC00332 up regulation compared with negative ones in CRC patients (p = 0.02).</p><p><strong>Conclusions: </strong>LINC00332 promotes PTX resistance and EMT in CRC via WNT and NOTCH pathways activation. It can also be suggested as a potential diagnostic marker in early-stage CRC patients. Targeting LINC00332 may enhance PTX response, warranting further studies for therapeutic application.</p>","PeriodicalId":49263,"journal":{"name":"Cell Division","volume":" ","pages":"3"},"PeriodicalIF":2.2,"publicationDate":"2025-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12821172/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145776209","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
hsa-let-7b-5p-associated BUB1/TMPO-AS1 ceRNA axis identified as a potential biomarker in lung adenocarcinoma. hsa-let-7b-5p相关BUB1/TMPO-AS1 ceRNA轴被确定为肺腺癌的潜在生物标志物。
IF 2.2 4区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-12-15 DOI: 10.1186/s13008-025-00173-x
Bhavika Baweja, Prerna Vats, Chainsee Saini, Ashok Kumar, Rajeev Nema

Objective: BUB1, a key mitotic checkpoint kinase, is often dysregulated in cancer, yet its regulatory mechanism remains unclear. This study investigates the BUB1-centered miRNA-lncRNA-mRNA (ceRNA) network, its role in cell cycle regulation and immune modulation.

Methods: Prognostic significance and expression profiles were assessed using TCGA-based databases such as KM Plotter, UALCAN, OncoDB, ENCORI, GEPIA2, Lung Cancer Explorer, and TCGAnalyzeR. Transcription factors were identified via Enrichr, and a ceRNA network was constructed using miRNet. Binding affinity and folding energy between BUB1, miRNA, and lncRNA were predicted using miRWalk and RNA22v2. Molecular docking evaluated interactions with natural compounds, chemotherapeutics, and inhibitor. Immune subpopulations were visualized using the SPRING viewer and correlation analysis with the immune cells was conducted using the GSCA and TIMER2.0 databases.

Results: BUB1 overexpression correlated with poor LUAD prognosis, especially in smokers (HR = 1.76), with transcriptomic analysis showing a 2.46 log2-fold increase in BUB1 transcript levels in tumor. TF-E2F1 and lncRNA-TMPO-AS1 were positively correlated with BUB1 (R = 0.664 and R = 0.632, respectively), while miRNA hsa-let-7b-5p showed a negative correlation (R = - 0.366). TMPO-AS1 exhibited an inverse association with hsa-let-7b-5p, suggesting a molecular sponge formation, repressing its tumor-suppressive activity. Docking revealed strong binding affinity of hesperidin (- 9.4 kcal/mol) with BUB1. Additionally, BUB1 expression negatively correlated with CD4⁺ T cells, suggesting an immunosuppressive role.

Conclusion: This study identifies the BUB1/E2F1/TMPO-AS1/hsa-let-7b-5p axis as a potential prognostic biomarker and therapeutic target in LUAD. Targeting hsa-let-7b-5p may modulate this network, offering opportunities for both diagnostic and prognostic interventions.

目的:BUB1是一种关键的有丝分裂检查点激酶,在癌症中经常出现失调,但其调控机制尚不清楚。本研究探讨了以bub1为中心的miRNA-lncRNA-mRNA (ceRNA)网络及其在细胞周期调控和免疫调节中的作用。方法:使用基于tcga的数据库(如KM绘图仪、UALCAN、OncoDB、ENCORI、GEPIA2、Lung Cancer Explorer和TCGAnalyzeR)评估预后意义和表达谱。转录因子通过富集识别,ceRNA网络通过miRNet构建。使用miRWalk和RNA22v2预测BUB1、miRNA和lncRNA之间的结合亲和力和折叠能。分子对接评估了与天然化合物、化疗药物和抑制剂的相互作用。使用SPRING查看器可视化免疫亚群,并使用GSCA和TIMER2.0数据库进行与免疫细胞的相关性分析。结果:BUB1过表达与不良LUAD预后相关,特别是在吸烟者中(HR = 1.76),转录组学分析显示肿瘤中BUB1转录物水平增加2.46 log2倍。TF-E2F1和lncRNA-TMPO-AS1与BUB1呈正相关(R分别为0.664和0.632),miRNA hsa-let-7b-5p呈负相关(R = - 0.366)。TMPO-AS1与hsa-let-7b-5p呈负相关,提示分子海绵形成,抑制其肿瘤抑制活性。对接发现橙皮苷与BUB1具有较强的结合亲和力(- 9.4 kcal/mol)。此外,BUB1的表达与CD4 + T细胞呈负相关,提示其具有免疫抑制作用。结论:本研究确定了BUB1/E2F1/TMPO-AS1/hsa-let-7b-5p轴是LUAD的潜在预后生物标志物和治疗靶点。靶向hsa-let-7b-5p可能会调节这一网络,为诊断和预后干预提供机会。
{"title":"hsa-let-7b-5p-associated BUB1/TMPO-AS1 ceRNA axis identified as a potential biomarker in lung adenocarcinoma.","authors":"Bhavika Baweja, Prerna Vats, Chainsee Saini, Ashok Kumar, Rajeev Nema","doi":"10.1186/s13008-025-00173-x","DOIUrl":"10.1186/s13008-025-00173-x","url":null,"abstract":"<p><strong>Objective: </strong>BUB1, a key mitotic checkpoint kinase, is often dysregulated in cancer, yet its regulatory mechanism remains unclear. This study investigates the BUB1-centered miRNA-lncRNA-mRNA (ceRNA) network, its role in cell cycle regulation and immune modulation.</p><p><strong>Methods: </strong>Prognostic significance and expression profiles were assessed using TCGA-based databases such as KM Plotter, UALCAN, OncoDB, ENCORI, GEPIA2, Lung Cancer Explorer, and TCGAnalyzeR. Transcription factors were identified via Enrichr, and a ceRNA network was constructed using miRNet. Binding affinity and folding energy between BUB1, miRNA, and lncRNA were predicted using miRWalk and RNA22v2. Molecular docking evaluated interactions with natural compounds, chemotherapeutics, and inhibitor. Immune subpopulations were visualized using the SPRING viewer and correlation analysis with the immune cells was conducted using the GSCA and TIMER2.0 databases.</p><p><strong>Results: </strong>BUB1 overexpression correlated with poor LUAD prognosis, especially in smokers (HR = 1.76), with transcriptomic analysis showing a 2.46 log2-fold increase in BUB1 transcript levels in tumor. TF-E2F1 and lncRNA-TMPO-AS1 were positively correlated with BUB1 (R = 0.664 and R = 0.632, respectively), while miRNA hsa-let-7b-5p showed a negative correlation (R = - 0.366). TMPO-AS1 exhibited an inverse association with hsa-let-7b-5p, suggesting a molecular sponge formation, repressing its tumor-suppressive activity. Docking revealed strong binding affinity of hesperidin (- 9.4 kcal/mol) with BUB1. Additionally, BUB1 expression negatively correlated with CD4⁺ T cells, suggesting an immunosuppressive role.</p><p><strong>Conclusion: </strong>This study identifies the BUB1/E2F1/TMPO-AS1/hsa-let-7b-5p axis as a potential prognostic biomarker and therapeutic target in LUAD. Targeting hsa-let-7b-5p may modulate this network, offering opportunities for both diagnostic and prognostic interventions.</p>","PeriodicalId":49263,"journal":{"name":"Cell Division","volume":" ","pages":"2"},"PeriodicalIF":2.2,"publicationDate":"2025-12-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12821949/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145764261","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
METTL3-mediated m6A methylation of LncRNA DUXAP8 promoted esophageal squamous cell carcinoma progression by activating the PI3K/AKT signaling pathway. mettl3介导的m6A甲基化LncRNA DUXAP8通过激活PI3K/AKT信号通路促进食管鳞状细胞癌的进展。
IF 2.2 4区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-12-05 DOI: 10.1186/s13008-025-00174-w
Peiyuan Wang, Suyu Chen, Mengxia Lei, Yujie Chen, Hao He, Peng Chen, Weijie Chen, Hang Zhou, Feng Wang, Derong Zhang
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引用次数: 0
Integrating genetic crosstalk between atherosclerosis and lung adenocarcinoma to advance precision diagnosis and treatment. 整合动脉粥样硬化与肺腺癌的基因串扰,提高精准诊断和治疗。
IF 2.2 4区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-11-14 DOI: 10.1186/s13008-025-00172-y
Haojie Dai, Xuchen Wang, Qiwen Wu, Ye Tan, Haoran Shen, Yichun Gu, Chuanxin Su, Aidong Chen

There is evidence that atherosclerosis is a "tumor-like" disease and has similar genetic mutations to lung adenocarcinoma. In addition, the treatment and progression of lung adenocarcinoma can contribute to the development of atherosclerosis. This highlights the importance of studying the mechanisms of crosstalk between these two diseases and developing tools for early diagnosis and prognosis. We obtained gene expression profiles of both diseases through the GEO and TCGA databases and screened for crosstalk genes on the basis of differential genes. On the one hand, we constructed a diagnostic model of AS with LUAD by screening the core genes through Lasso and SVM-RFE to advance the early diagnosis of AS in patients with LUAD and explored the association between the core genes and immune infiltration. On the other hand, we constructed a robust prognostic model of LUAD based on crosstalk genes, explored the potential mechanisms of prognostic model genes in the regulation of immune infiltration and predicted treatment differences in LUAD patients to advance clinical decision-making. In addition, we constructed a PPI network based on crosstalk genes and a TF-miRNA-mRNA network, and performed drug prediction and molecular docking validation based on core targets. In conclusion, we revealed the crosstalk between AS and LUAD based on multifaceted transcriptomic analysis, screened novel targets, advanced diagnosis and prognosis, explored potential drugs and treatments, and provided invaluable insights into the research and treatment of AS with LUAD.

有证据表明动脉粥样硬化是一种“肿瘤样”疾病,具有与肺腺癌相似的基因突变。此外,肺腺癌的治疗和进展可促进动脉粥样硬化的发展。这突出了研究这两种疾病之间的串扰机制以及开发早期诊断和预后工具的重要性。我们通过GEO和TCGA数据库获得两种疾病的基因表达谱,并在差异基因的基础上筛选相声基因。一方面,我们通过Lasso和SVM-RFE筛选核心基因,构建AS合并LUAD的诊断模型,推进LUAD患者AS的早期诊断,探讨核心基因与免疫浸润的关系。另一方面,构建基于串扰基因的稳健LUAD预后模型,探索预后模型基因调控免疫浸润的潜在机制,预测LUAD患者的治疗差异,为临床决策提供依据。此外,我们构建了基于串扰基因的PPI网络和TF-miRNA-mRNA网络,并基于核心靶点进行药物预测和分子对接验证。总之,我们基于多方面转录组学分析揭示了AS和LUAD之间的相互作用,筛选了新的靶点,先进的诊断和预后,探索了潜在的药物和治疗方法,为AS合并LUAD的研究和治疗提供了宝贵的见解。
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引用次数: 0
Molecular pathology of microRNA-339 during tumor progression. 肿瘤进展过程中microRNA-339的分子病理学研究。
IF 2.2 4区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-11-10 DOI: 10.1186/s13008-025-00170-0
Iman Akhlaghipour, Negin Taghehchian, Meysam Moghbeli

Cancer, as one of the main causes of human deaths, has an adverse effect on the quality of life in cancer patients. Despite many advances in diagnostic and therapeutic methods, there is still a poor prognosis in cancer patients that can be associated with the late tumor diagnosis. Therefore, investigating the molecular pathology of cancer can help to introduce early diagnostic markers. MicroRNAs (miRNAs) have key roles in regulation of cell proliferation, migration, and apoptosis. Deregulations of miRNAs have been widely reported in various cancers. Regarding the high stability of miRNAs in body fluids, they can be used as the non-invasive diagnostic markers in tumor screening programs and early detection. Considering the aberrant expression of miR-339 in a wide range of tumors, we discussed the role of miR-339 during tumor progressions. MiR-339 mainly functions as a tumor suppressor by the modulation of apoptosis, transcription factors, and signaling pathways. This review can be an effective step towards suggesting miR-339 as a therapeutic target and diagnostic marker in cancer patients.

癌症作为人类死亡的主要原因之一,对癌症患者的生活质量产生不利影响。尽管诊断和治疗方法取得了许多进步,但癌症患者的预后仍较差,这可能与肿瘤诊断较晚有关。因此,研究癌症的分子病理学有助于引入早期诊断标志物。MicroRNAs (miRNAs)在细胞增殖、迁移和凋亡的调控中起着关键作用。mirna的失调在各种癌症中被广泛报道。由于mirna在体液中的高稳定性,可作为肿瘤筛查和早期发现的无创诊断标志物。考虑到miR-339在多种肿瘤中的异常表达,我们讨论了miR-339在肿瘤进展中的作用。MiR-339主要通过调控细胞凋亡、转录因子和信号通路发挥抑瘤作用。这一综述可能是建议miR-339作为癌症患者的治疗靶点和诊断标志物的有效一步。
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引用次数: 0
DNMT3B blocks TAL1-mediated PKM2 transcriptional repression to promote non-small cell lung cancer progression through inducing glycolysis. DNMT3B阻断tal1介导的PKM2转录抑制,通过诱导糖酵解促进非小细胞肺癌进展。
IF 2.2 4区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-11-03 DOI: 10.1186/s13008-025-00168-8
Yucheng Guo, Bin Xu, Weimin Mao, Zhao Zhao, Zhao Li, Zhengzhou Qiu, Changying Guo

Background: Non-small cell lung cancer (NSCLC) is a major subtype of lung cancer, with high mortality and limited treatment approaches. This paper explores the function of TAL1 in NSCLC progression and glycolysis and its mechanism.

Methods: Bioinformatics analysis screened out TAL1 and the upstream and downstream molecules. MTT, EdU, wound healing assay, Transwell assay, and TUNEL were utilized to detect the malignant phenotype of A549 and H460 cells. Western blot analysis was conducted to detect the expression of the proliferation-associated protein (Ki67), EMT-associated proteins (E-cadherin, N-cadherin), and glycolysis-associated proteins (GLUT1, LDHA, and PDK1). Cellular metabolism assays detected changes in glucose metabolites. A xenograft model was constructed, and the mouse tumor weight and volumes were measured periodically. Dual-luciferase assays and ChIP assays were performed to authenticate the transcriptional regulation of TAL1 on PKM2 and the relationship between DNMT3B and TAL1.

Results: TAL1 was lowly expressed in NSCLC, and TAL1 overexpression prevented the proliferation, migration, and invasion and elevated apoptosis. TAL1 inhibited PKM2 transcription, and overexpression of PKM2 reversed the trend of overexpression of TAL1 and promoted glycolysis. DNMT3B inhibited TAL1 expression through methylation modification. DNMT3B overexpression facilitated NSCLC cell growth and promoted glycolysis, and further overexpression of TAL1 reversed this trend. In vivo experiments showed that overexpression of TAL1 inhibited NSCLC progression, while combined overexpression of PKM2 promoted NSCLC progression. Overexpression of DNMT3B promoted NSCLC progression, and combined knockdown of PKM2 inhibited NSCLC progression.

Conclusion: DNMT3B activates glycolysis and promotes NSCLC progression by mediating methylation modification of TAL1 and inducing PKM2 transcription.

背景:非小细胞肺癌(NSCLC)是肺癌的主要亚型,死亡率高,治疗方法有限。本文探讨TAL1在NSCLC进展和糖酵解中的作用及其机制。方法:生物信息学分析筛选TAL1及其上下游分子。采用MTT、EdU、创面愈合法、Transwell法和TUNEL法检测A549和H460细胞的恶性表型。Western blot检测增殖相关蛋白(Ki67)、emt相关蛋白(E-cadherin、N-cadherin)和糖酵解相关蛋白(GLUT1、LDHA和PDK1)的表达。细胞代谢试验检测葡萄糖代谢物的变化。建立异种移植瘤模型,定期测定小鼠肿瘤重量和体积。采用双荧光素酶法和ChIP法验证TAL1对PKM2的转录调控以及DNMT3B与TAL1之间的关系。结果:TAL1在NSCLC中低表达,TAL1过表达可抑制细胞的增殖、迁移、侵袭,增加细胞凋亡。TAL1抑制PKM2转录,PKM2过表达逆转TAL1过表达趋势,促进糖酵解。DNMT3B通过甲基化修饰抑制TAL1的表达。DNMT3B过表达促进NSCLC细胞生长,促进糖酵解,TAL1过表达逆转这一趋势。体内实验表明TAL1过表达抑制NSCLC进展,而PKM2联合过表达促进NSCLC进展。DNMT3B过表达促进NSCLC进展,联合敲低PKM2抑制NSCLC进展。结论:DNMT3B通过介导TAL1甲基化修饰,诱导PKM2转录,激活糖酵解,促进NSCLC进展。
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引用次数: 0
Long noncoding RNA TMPO-AS1 upregulates chromosomal passenger complex expression to promote cell proliferation in lung cancer via sponging microRNA let-7b-5p. 长链非编码RNA TMPO-AS1通过海绵化微小RNA let-7b-5p,上调染色体乘客复合物表达,促进肺癌细胞增殖。
IF 2.2 4区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-10-15 DOI: 10.1186/s13008-025-00166-w
Prerna Vats, Bhavika Baweja, Chainsee Saini, Sakshi Soni, Tripti Tungariya, Aditi Singh, Ashok Kumar, Rajeev Nema

Objective: This study aims to develop a ceRNA network associated with the chromosomal passenger complex (CPC) and identify a prognostic signature in lung cancer, the most diagnosed globally, to better understand the molecular mechanisms underlying tumor progression.

Methods: The study used R packages and publicly available databases to conduct multi-omics In-silico analyses on CPC. These tools facilitated gene expression profiling, prognostic assessment, exploration of miRNA (microRNA), lncRNA (long non-coding RNA), transcription factor interactions, and pathway enrichment analysis. Molecular docking tools were used to evaluate binding affinities of CPC proteins with tobacco carcinogens, selective Aurora kinase B inhibitors, FDA-approved chemotherapeutics, and natural compounds. Immune landscape analysis was conducted using the SPRING viewer to visualize immune cell subpopulations in NSCLC, validated by correlation analysis using the GSCA database.

Results: The study reveals that CPC genes-BIRC5, CDCA8, INCENP, and AURKB-are overexpressed in lung adenocarcinoma (LUAD) and are associated with poor overall survival, especially in smokers. A dysregulated ceRNA axis involving lncRNA TMPO-AS1 and miRNA-hsa-let-7b-5p was identified, along with transcription factor E2F1, which shows a strong correlation with the CPC genes. Notably, TMPO-AS1 and E2F1 are positively correlated, while hsa-let-7b-5p is negatively correlated with the CPCs, contributing to tumor progression. Downregulation of hsa-let-7b-5p is linked to poorer outcomes, highlighting its potential as a therapeutic target. Nicotine and NNK show stable binding, suggesting potential roles in activating the CPC pathway and contributing to LUAD progression. CPCs have a strong binding affinity with Hesperidin, a natural bioflavonoid, compared to known chemotherapeutic agents like docetaxel and paclitaxel. CPC genes are negatively correlated with CD4⁺ T cells, indicating a role in promoting an immunosuppressive tumor microenvironment.

Conclusion: Lung adenocarcinoma patients have poorer prognosis due to higher levels of CPCs, TMPO-AS1, and E2F1. A sponge complex between TMPO-AS1 and hsa-let-7b-5p may contribute to the tumor progression, and targeting CPCs with natural compounds could offer therapeutic potential. Highlights 1. The overexpression of chromosomal passenger complex genes, AURKB, BIRC5, CDCA8, and INCENP is significantly associated with poor prognosis in lung adenocarcinoma (LUAD), particularly among smokers. 2. The competing endogenous RNA (ceRNA) axis, which involves the long non-coding RNA TMPO-AS1 and the miRNA hsa-let-7b-5p, regulates the expression of these CPC genes. TMPO-AS1 shows a positive correlation with CPC genes, while hsa-let-7b-5p shows a negative correlation. 3. Survival analysis indicates that the combined expression of CPC genes, TMPO-AS1, hsa-let-7b-5p, and E2F1 may serve as a reliab

目的:本研究旨在建立与染色体乘客复合体(CPC)相关的ceRNA网络,并确定肺癌(全球诊断最多的肺癌)的预后特征,以更好地了解肿瘤进展的分子机制。方法:采用R包和公开数据库对CPC进行多组学in - silicon分析。这些工具促进了基因表达谱分析、预后评估、miRNA (microRNA)、lncRNA(长链非编码RNA)的探索、转录因子相互作用和途径富集分析。使用分子对接工具评估CPC蛋白与烟草致癌物、选择性极光激酶B抑制剂、fda批准的化疗药物和天然化合物的结合亲和力。使用SPRING查看器进行免疫景观分析,以可视化非小细胞肺癌的免疫细胞亚群,并通过使用GSCA数据库进行相关性分析进行验证。结果:本研究显示CPC基因birc5、CDCA8、INCENP和aurkb在肺腺癌(LUAD)中过表达,并与较差的总生存率相关,尤其是在吸烟者中。发现了一个涉及lncRNA TMPO-AS1和miRNA-hsa-let-7b-5p的失调的ceRNA轴,以及转录因子E2F1,显示与CPC基因有很强的相关性。值得注意的是,TMPO-AS1与E2F1呈正相关,而hsa-let-7b-5p与CPCs呈负相关,促进了肿瘤的进展。hsa-let-7b-5p的下调与较差的结果有关,突出了其作为治疗靶点的潜力。尼古丁和NNK表现出稳定的结合,提示其在激活CPC通路和促进LUAD进展中的潜在作用。与已知的化疗药物如多西紫杉醇和紫杉醇相比,cpc与橙皮苷(一种天然生物类黄酮)具有很强的结合亲和力。CPC基因与CD4 + T细胞呈负相关,表明其在促进免疫抑制肿瘤微环境中的作用。结论:肺腺癌患者的CPCs、TMPO-AS1、E2F1水平较高,预后较差。TMPO-AS1和hsa-let-7b-5p之间的海绵复合物可能促进肿瘤进展,用天然化合物靶向CPCs可能具有治疗潜力。亮点1。染色体乘客复合物基因AURKB、BIRC5、CDCA8和INCENP的过表达与肺腺癌(LUAD)的不良预后显著相关,尤其是在吸烟者中。2. 竞争内源RNA (ceRNA)轴,包括长链非编码RNA TMPO-AS1和miRNA hsa-let-7b-5p,调节这些CPC基因的表达。TMPO-AS1与CPC基因呈正相关,hsa-let-7b-5p呈负相关。3. 生存分析表明CPC基因、TMPO-AS1、hsa-let-7b-5p和E2F1的联合表达可作为吸烟者LUAD的可靠预后生物标志物面板。4. 与Barasertib、Docetaxel和Paclitaxel相比,橙皮苷与CPC蛋白(尤其是AURKB)具有很强的结合亲和力,这凸显了橙皮苷作为治疗药物的潜力。5. CPC基因、E2F1和TMPO-AS1在LUAD中的过表达与CD4 + T细胞浸润减少密切相关,表明它们在促进免疫抑制肿瘤微环境中的作用。
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Cell Division
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