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Ensemble-based statistical verification of INM RAS Earth system model 基于集成的INM-RAS地球系统模型统计验证
IF 0.6 4区 数学 Q2 Mathematics Pub Date : 2023-06-01 DOI: 10.1515/rnam-2023-0014
M. Tarasevich, I. Tsybulin, V. A. Onoprienko, D. Kulyamin, E. Volodin
Abstract Modern numerical models of the Earth system are complex and inherit its natural chaotic behaviour. The numerical results depend on various specifications of the simulation process, including computing systems, compilers, etc. Due to the chaotic behaviour, these minor differences lead to significant and unpredictable deviations. Therefore, some procedure verifying that simulation results describe the behaviour of the same physical system is of practical importance. The present paper proposes a statistical verification algorithm developed for the INM RAS Earth system model. Different ensemble generation techniques and statistical estimators are evaluated for verification suitability. The ability of the method to detect the deviations in the simulation results is demonstrated on a series of cases. Practical guidelines on how to choose the perturbation amplitude for the ensemble generation are provided for various verification cases.
摘要地球系统的现代数值模型是复杂的,并继承了其自然的混沌行为。数值结果取决于模拟过程的各种规格,包括计算系统、编译器等。由于混沌行为,这些微小的差异会导致显著且不可预测的偏差。因此,验证模拟结果描述同一物理系统行为的一些程序具有实际意义。本文提出了一种为INM-RAS地球系统模型开发的统计验证算法。评估了不同的集成生成技术和统计估计器的验证适用性。在一系列案例中证明了该方法检测模拟结果偏差的能力。针对各种验证情况,提供了关于如何选择系综生成的扰动幅度的实用指南。
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引用次数: 0
Validation of boundary conditions for coronary circulation model based on a lumped parameter approach 基于集总参数法的冠状动脉循环模型边界条件的验证
IF 0.6 4区 数学 Q2 Mathematics Pub Date : 2023-06-01 DOI: 10.1515/rnam-2023-0013
S. Simakov, T. Gamilov, F. Liang, P. Chomakhidze, P. Kopylov
Abstract In the present work, we construct a model of coronary flow, which utilizes both CT scans of large coronary arteries and coronary CT perfusion. The model describes pulsatile flow in the patient’s network of coronary vessels and takes into account a number of physiological effects: myocardium contractions, stenoses, impairment of microvascular perfusion. The main novelty of this model is the new smooth boundary conditions that have not been used before in patient-specific simulations of coronary circulation. New boundary conditions use 0D lumped model approach and provide asymptotic convergence of the solution for the cases of one-to-one vascular connection and bifurcation with a very thin child vessel. The new boundary conditions make it possible to estimate the fractional flow margin more accurately. We also studied sensitivity of haemodynamic indices (fractional flow reserve, coronary flow reserve, instantaneous wave-free ratio) to the variations of microcirculation impairment. No substantial difference in sensitivity was observed between new model and original approach. The advantage of the presented approach is the availability of the required data in everyday clinical practice and, thus, improved personalization of the model.
在本工作中,我们构建了一个冠状动脉血流模型,该模型同时利用了大冠状动脉的CT扫描和冠状动脉CT灌注。该模型描述了患者冠状血管网络中的脉动流,并考虑了一些生理效应:心肌收缩、血管狭窄、微血管灌注损伤。该模型的主要新颖之处在于新的光滑边界条件,这在以前的患者特异性冠状动脉循环模拟中从未使用过。新的边界条件采用了0 - d集总模型方法,并对具有极细子血管的一对一血管连接和分支的情况提供了解的渐近收敛性。新的边界条件使得更准确地估计分流裕度成为可能。我们还研究了血流动力学指标(分数血流储备、冠状动脉血流储备、瞬时无波比)对微循环损伤变化的敏感性。新模型与原方法在灵敏度上无显著差异。所提出的方法的优点是在日常临床实践中所需数据的可用性,因此,改进了模型的个性化。
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引用次数: 1
Frontmatter 头版头条
4区 数学 Q2 Mathematics Pub Date : 2023-06-01 DOI: 10.1515/rnam-2023-frontmatter3
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引用次数: 0
Neural networks singular evolutive interpolated Kalman filter and its application to data assimilation for 2D water pollution model 神经网络奇异进化插值卡尔曼滤波器及其在二维水污染模型数据同化中的应用
IF 0.6 4区 数学 Q2 Mathematics Pub Date : 2023-06-01 DOI: 10.1515/rnam-2023-0015
T. Tran, V. Shutyaev, H. S. Hoang, Shuai Li, Chinh Kien Nguyen, Hong Phong Nguyen, Thi Thanh Huong Duong
Abstract The present study promotes a new algorithm for estimating the water pollution propagation with the primary goal of providing more reliable and high quality estimates to decision makers. To date, the widely used variational method suffers from the large computational burden, which limits its application in practice. Moreover, this method, considering the initial state as a control variable, is very sensitive in specifying initial error, especially for unstable dynamical systems. The Neural Network Filter (NNF), proposed in the present paper, is aimed at overcoming these two drawbacks in the variational method: by its nature, the NNF is sequential (no batch large assimilation window used) and stable even for unstable dynamics, with the gain parameters as control variables. The NNF, developed in the present paper, is a Neural Network Filter (NNF) version of the Singular Evolutive Interpolated Kalman Filter (SEIKF). One of the new versions of this NNF is that it uses structure of the gain of SEIKF0 taken by the SEIKF at the first time moment of correction process. To deal with the uncertainty of the system parameters and of the noise covariance, the proposed Neural Network SEIKF0 named by NNSEIKF0 makes use of the covariance of a reduced rank iterated during assimilation process and of some pertinent gain parameters tuned adaptively to yield the minimum prediction error for the system output. The computational burden in implementation of the NNSEIKF0 is reduced drastically due to applying the optimization tool known as a simultaneous perturbation stochastic approximation (SPSA) algorithm, which requires only two integrations of the numerical model. No iterative loop is required at each assimilation instant as usually happens with the standard gradient descent optimization algorithms. Data assimilation experiment, carried out by the SEIKF0 and NNSEIKF0, is implemented for the Thanh Nhan Lake in Hanoi and the performance comparison between the NNSEIKF0 and SEIKF0 is given to show the high efficiency of the proposed NNSEIKF0.
摘要本研究提出了一种估计水污染传播的新算法,其主要目标是为决策者提供更可靠、高质量的估计。迄今为止,广泛使用的变分法计算量大,限制了其在实践中的应用。此外,该方法将初始状态视为控制变量,在指定初始误差时非常敏感,尤其是对于不稳定动力系统。本文提出的神经网络滤波器(NNF)旨在克服变分法中的这两个缺点:从本质上讲,NNF是连续的(不使用批量大同化窗口),即使在不稳定的动力学中也是稳定的,以增益参数为控制变量。本文开发的NNF是奇异进化插值卡尔曼滤波器(SEIKF)的神经网络滤波器(NNF)版本。该NNF的一个新版本是,它使用SEIKF在校正过程的第一个时刻获得的SEIKF0的增益的结构。为了处理系统参数和噪声协方差的不确定性,所提出的由NNSEIKF0命名的神经网络SEIKF0利用同化过程中迭代的降阶协方差和自适应调整的一些相关增益参数,以产生系统输出的最小预测误差。由于应用了被称为同时扰动随机近似(SPSA)算法的优化工具,NNSEIKF0实现中的计算负担大大减少,该算法只需要对数值模型进行两次积分。在每个同化时刻不需要迭代循环,就像标准梯度下降优化算法通常发生的那样。利用SEIKF0和NNSEIKF0对河内的Thanh Nhan湖进行了数据同化实验,并将其与SEIKF0进行了性能比较,表明了所提出的NNSEIKFO的高效性。
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引用次数: 0
Operator-difference schemes on non-uniform grids for second-order evolutionary equations 二阶演化方程非均匀网格上的算子差分格式
IF 0.6 4区 数学 Q2 Mathematics Pub Date : 2023-03-01 DOI: 10.48550/arXiv.2303.00421
P. Vabishchevich
Abstract The approximate solution of the Cauchy problem for second-order evolution equations is performed, first of all, using three-level time approximations. Such approximations are easily constructed and relatively uncomplicated to investigate when using uniform time grids. When solving applied problems numerically, we should focus on approximations with variable time steps. When using multilevel schemes on non-uniform grids, we should maintain accuracy by choosing appropriate approximations and ensuring stability of the approximate solution. In this paper, we construct unconditionally stable schemes of the first- and second-order accuracy on a non-uniform time grid for the approximate solution of the Cauchy problem for a second-order evolutionary equation. The novelty of the paper consists in the fact that these stability estimates are obtained without any restrictions on the magnitude of the step change and on the number of step changes. We use a special transformation of the original second-order differential-operator equation to a system of first-order equations. For the system of first-order equations, we apply standard two-level time approximations. We obtained stability estimates for the initial data and the right-hand side in finite-dimensional Hilbert space. Eliminating auxiliary variables leads to three-level schemes for the initial second-order evolution equation. Numerical experiments were performed for the test problem for a one-dimensional in space bi-parabolic equation. The accuracy and stability properties of the constructed schemes are demonstrated on non-uniform grids with randomly varying grid steps.
摘要本文首先利用三阶时间逼近求解二阶演化方程的Cauchy问题。当使用均匀的时间网格时,这种近似很容易构造并且相对不复杂。在数值求解应用问题时,我们应该关注可变时间步长的近似。在非均匀网格上使用多层格式时,应通过选择适当的近似和保证近似解的稳定性来保持精度。本文构造了一类二阶演化方程Cauchy问题近似解的非均匀时间网格上一阶和二阶精度的无条件稳定格式。本文的新颖之处在于,这些稳定性估计是在不受阶跃变化幅度和阶跃变化次数限制的情况下得到的。我们用一个特殊的变换将原来的二阶微分算子方程转化为一阶方程组。对于一阶方程组,我们采用标准的两级时间近似。我们得到了有限维Hilbert空间中初始数据和右侧数据的稳定性估计。消去辅助变量,得到初始二阶演化方程的三级格式。对一维空间双抛物型方程的测试问题进行了数值实验。在具有随机变化网格步长的非均匀网格上,验证了所构造格式的准确性和稳定性。
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引用次数: 0
Computational methods for multiscale modelling of virus infection dynamics 病毒感染动力学多尺度建模的计算方法
IF 0.6 4区 数学 Q2 Mathematics Pub Date : 2023-03-01 DOI: 10.1515/rnam-2023-0007
D. Grebennikov
Abstract Virus infection dynamics is governed by the processes on multiple scales: on the whole organism level, tissue level, and intracellular level. In this paper, we develop a multi-scale multi-compartment model of HIV infection in a simplified setting and the computational methods for numerical realization of the model. The multiscale model describes the processes from various scales and of different nature (cell motility, virus diffusion, intracellular virus replication). Intracellular replication model is based on a Markov chain with time-inhomogeneous propensities that depend on the extracellular level of virions. Reaction diffusion equations used to model free virion diffusion in the lymphoid tissue have moving sources, which are determined by the positions of the infected cells (immune cell motility model) and the rate of virion secretion from them (intracellular model). Immune cell motility model parameterizes the intercellular interaction forces, friction and the stochastic force of active cell motility. Together, this allows for a proper description of the intracellular stochasticity that propagates across multiple scales. A hybrid discrete-continuous stochastic-deterministic algorithm for simulation of the multiscale model based on the uniformization Monte Carlo method is implemented.
摘要病毒感染动力学受多个尺度的过程控制:在整个生物体水平、组织水平和细胞内水平。在本文中,我们在简化的环境中开发了一个HIV感染的多尺度多隔间模型,以及该模型的数值实现的计算方法。多尺度模型描述了不同尺度和不同性质的过程(细胞运动、病毒扩散、细胞内病毒复制)。细胞内复制模型基于马尔可夫链,具有依赖于病毒粒子细胞外水平的时间不均匀倾向。用于模拟淋巴组织中自由病毒粒子扩散的反应-扩散方程具有移动源,其由感染细胞的位置(免疫细胞运动模型)和病毒粒子从其分泌的速率(细胞内模型)决定。免疫细胞运动模型参数化了细胞间相互作用力、摩擦力和主动细胞运动的随机力。总之,这允许对跨多个尺度传播的细胞内随机性进行适当的描述。基于均匀化蒙特卡罗方法,实现了一种用于模拟多尺度模型的混合离散连续随机确定性算法。
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引用次数: 0
Effect of electron temperature on formation of travelling waves in plasma: Kinetic and hydrodynamic models 电子温度对等离子体行波形成的影响:动力学和流体动力学模型
IF 0.6 4区 数学 Q2 Mathematics Pub Date : 2023-03-01 DOI: 10.1515/rnam-2023-0006
E. V. Chizhonkov, A. A. Frolov
Abstract The kinetic formulation of the model problem of plasma waves excitation by a powerful short laser pulse is numerically studied for the first time. Kinetic and simplest hydrodynamic plasma models are also compared for the problem under consideration. It is shown that the considered hydrodynamic models do not provide good approximations to the solution to the Vlasov kinetic equation, namely, one leads to discontinuous solutions and the other has a significant qualitative distinction. At a low plasma temperature, the effect of non-isothermicity of the process is small, but it can lead to significant distortions of the solution during further heating. The results obtained here imply that the first two moments of the distribution function are not enough to describe the plasma hydrodynamics; higher-order moments should be used.
摘要首次对强短激光脉冲激发等离子体波模型问题的动力学公式进行了数值研究。对于所考虑的问题,还比较了动力学等离子体模型和最简单的流体动力学等离子体模型。结果表明,所考虑的流体动力学模型不能很好地近似Vlasov动力学方程的解,即一个模型导致不连续解,另一个模型具有显著的定性差异。在较低的等离子体温度下,该过程的非等温性影响很小,但在进一步加热过程中会导致溶液的显著扭曲。所得结果表明,分布函数的前两个矩不足以描述等离子体流体力学;应使用高阶矩。
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引用次数: 0
Dependence of optimal disturbances on periodic solution phases for time-delay systems 时滞系统最优扰动与周期解相的关系
IF 0.6 4区 数学 Q2 Mathematics Pub Date : 2023-03-01 DOI: 10.1515/rnam-2023-0008
M. Y. Khristichenko, Y. Nechepurenko, G. Bocharov
Abstract The paper is focused on the dependence of optimal disturbances of stable periodic solutions of time-delay systems on phases of such solutions. The results of numerical experiments with the well-known model of the dynamics of infection caused by lymphocytic choriomeningitis virus are presented and discussed. A new more efficient method for computing the optimal disturbances of periodic solutions is proposed and used.
研究了时滞系统稳定周期解的最优扰动与周期解相位的关系。本文介绍并讨论了著名的淋巴细胞性脉络丛脑膜炎病毒感染动力学模型的数值实验结果。提出并应用了一种新的更有效的周期解最优扰动计算方法。
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引用次数: 0
Finite difference scheme for a non-linear subdiffusion problem with a fractional derivative along the trajectory of motion 沿运动轨迹具有分数导数的非线性次扩散问题的有限差分格式
IF 0.6 4区 数学 Q2 Mathematics Pub Date : 2023-02-01 DOI: 10.1515/rnam-2023-0003
A. Lapin, V. Shaydurov, R. Yanbarisov
Abstract The article is devoted to the construction and study of a finite-difference scheme for a one-dimensional diffusion–convection equation with a fractional derivative with respect to the characteristic of the convection operator. It develops the previous results of the authors from [5, 6] in the following ways: the differential equation contains a fractional derivative of variable order along the characteristics of the convection operator and a quasi-linear diffusion operator; a new accuracy estimate is proved, which singles out the dependence of the accuracy of mesh scheme on the curvature of the characteristics.
摘要考虑对流算子的特征,构造并研究了一类具有分数阶导数的一维扩散对流方程的有限差分格式。它在以下方面发展了前人[5,6]的结果:微分方程包含一个沿对流算子和拟线性扩散算子特征的变阶分数阶导数;提出了一种新的精度估计方法,该方法排除了网格格式精度对特征曲率的依赖关系。
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引用次数: 1
Mesh-independent multidimensional coupling of surface and subsurface water flow models 地表和地下水流模型的网格无关多维耦合
IF 0.6 4区 数学 Q2 Mathematics Pub Date : 2023-02-01 DOI: 10.1515/rnam-2023-0004
K. Novikov
Abstract We present a new approach for multidimensional surface–subsurface flow coupling. The method does not require mesh-to-canal refinement or alignment and is based on numerical characteristics of the intersection of one-dimensional hydraulic object beds and the surface faces of the 3D tetrahedral mesh. The method is validated using widely recognized tilted v-catchment with subsurface and Borden catchment benchmarks.
摘要我们提出了一种新的多维地表-地下流动耦合方法。该方法不需要网格到运河的细化或对齐,并且基于一维水力物体床和三维四面体网格的表面相交的数值特征。该方法使用公认的倾斜v型集水区和地下和波登集水区基准进行了验证。
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引用次数: 0
期刊
Russian Journal of Numerical Analysis and Mathematical Modelling
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