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Mixed volumes of networks with binomial steady-states 具有二项稳定状态的网络混合体积
IF 0.6 4区 数学 Q4 COMPUTER SCIENCE, THEORY & METHODS Pub Date : 2024-10-11 DOI: 10.1016/j.jsc.2024.102395
Jane Ivy Coons , Maize Curiel , Elizabeth Gross
The steady-state degree of a chemical reaction network is the number of complex steady-states for generic rate constants and initial conditions. One way to bound the steady-state degree is through the mixed volume of an associated steady-state system. In this work, we show that for partitionable binomial chemical reaction systems, whose resulting steady-state systems are given by a set of binomials and a set of linear (not necessarily binomial) conservation equations, computing the mixed volume is equivalent to finding the volume of a single mixed cell that is the translate of a parallelotope. Additionally, we give a coloring condition on cycle networks to identify reaction systems with binomial steady-state ideals. We highlight both of these theorems using a class of networks referred to as species-overlapping networks and give a formula for the mixed volume of these networks.
化学反应网络的稳态度是在一般速率常数和初始条件下的复合稳态的数量。约束稳态度的一种方法是通过相关稳态系统的混合体积。在这项工作中,我们证明了对于可分割的二项式化学反应系统(其稳态系统由一组二项式和一组线性(不一定是二项式)守恒方程给出),计算混合体积等同于求出单个混合池的体积,该混合池是平行梯度的平移。此外,我们还给出了循环网络的着色条件,以识别具有二项式稳态理想的反应系统。我们使用一类被称为物种重叠网络的网络来强调这两个定理,并给出了这些网络的混合体积公式。
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引用次数: 0
Coupled cluster degree of the Grassmannian 格拉斯曼的耦合群集度
IF 0.6 4区 数学 Q4 COMPUTER SCIENCE, THEORY & METHODS Pub Date : 2024-10-11 DOI: 10.1016/j.jsc.2024.102396
Viktoriia Borovik , Bernd Sturmfels , Svala Sverrisdóttir
We determine the number of complex solutions to a nonlinear eigenvalue problem on the Grassmannian in its Plücker embedding. This is motivated by quantum chemistry, where it represents the truncation to single electrons in coupled cluster theory. We prove the formula for the Grassmannian of lines which was conjectured in earlier work with Fabian Faulstich. This rests on the geometry of the graph of a birational parametrization of the Grassmannian. We present a squarefree Gröbner basis for this graph, and we develop connections to toric degenerations from representation theory.
我们确定了格拉斯曼非线性特征值问题在其普吕克嵌入中的复数解。这是由量子化学激发的,它代表了耦合簇理论中对单个电子的截断。我们证明了与法比安-福尔斯蒂希(Fabian Faulstich)在早期研究中猜想的格拉斯曼线的公式。这依赖于格拉斯曼双参数化的图形几何。我们提出了该图的无平方格罗伯纳基础,并从表示理论中发展了与环退化的联系。
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引用次数: 0
Creative telescoping for hypergeometric double sums 超几何双和的创造性伸缩
IF 0.6 4区 数学 Q4 COMPUTER SCIENCE, THEORY & METHODS Pub Date : 2024-10-10 DOI: 10.1016/j.jsc.2024.102394
Peter Paule , Carsten Schneider
We present efficient methods for calculating linear recurrences of hypergeometric double sums and, more generally, of multiple sums. In particular, we supplement this approach with the algorithmic theory of contiguous relations, which guarantees the applicability of our method for many input sums. In addition, we elaborate new techniques to optimize the underlying key task of our method to compute rational solutions of parameterized linear recurrences.
我们提出了计算超几何双和线性递归的有效方法,更广泛地说,我们提出了计算多重和线性递归的有效方法。特别是,我们用连续关系的算法理论对这一方法进行了补充,从而保证了我们的方法适用于许多输入和。此外,我们还阐述了新技术,以优化我们计算参数化线性递归有理解方法的基本关键任务。
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引用次数: 0
On nonnegative invariant quartics in type A 论 A 型非负不变四元数
IF 0.6 4区 数学 Q4 COMPUTER SCIENCE, THEORY & METHODS Pub Date : 2024-10-09 DOI: 10.1016/j.jsc.2024.102393
Sebastian Debus , Charu Goel , Salma Kuhlmann , Cordian Riener
The equivariant nonnegativity versus sums of squares question has been solved for any infinite series of essential reflection groups but type A. As a first step to a classification, we analyse An-invariant quartics. We prove that the cones of invariant sums of squares and nonnegative forms are equal if and only if the number of variables is at most 3 or odd.
对于除 A 型之外的任何无限序列本质反射群,等变非负性与平方和问题都已解决。我们证明,当且仅当变量数至多为 3 或奇数时,不变平方和与非负形式的锥相等。
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引用次数: 0
A geometric algorithm for the factorization of rational motions in conformal three space 共形三空间有理运动因式分解的几何算法
IF 0.6 4区 数学 Q4 COMPUTER SCIENCE, THEORY & METHODS Pub Date : 2024-10-05 DOI: 10.1016/j.jsc.2024.102388
Zijia Li , Hans-Peter Schröcker , Johannes Siegele
Rational motions in conformal three space can be parametrized by polynomials with coefficients in a suitable Clifford algebra. We call them “spinor polynomials.” In this text we present a new algorithm to decompose generic spinor polynomials into linear factors. The factorization algorithm is based on the “kinematics at infinity”. Factorizations exist generically but not generally and are typically not unique. We prove that generic multiples of non-factorizable spinor polynomials admit factorizations and we demonstrate at hand of an example how our ideas can be used to tackle the hitherto unsolved problem of “factorizing” algebraic motions.
共形三空间中的有理运动可以用多项式参数化,多项式的系数在合适的克利福德代数中。我们称之为 "自旋多项式"。在这篇文章中,我们提出了一种新算法,可将一般旋量多项式分解为线性因子。因式分解算法基于 "无限运动学"。因式分解一般存在,但并不普遍,而且通常不是唯一的。我们证明了不可因式分解的旋量多项式的一般倍数允许因式分解,并通过实例演示了如何利用我们的想法来解决代数运动的 "因式分解 "这一迄今尚未解决的问题。
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引用次数: 0
A new algorithm for Gröbner bases conversion 格氏碱基转换的新算法
IF 0.6 4区 数学 Q4 COMPUTER SCIENCE, THEORY & METHODS Pub Date : 2024-10-04 DOI: 10.1016/j.jsc.2024.102391
Amir Hashemi , Deepak Kapur
A new approach for Gröbner bases conversion of polynomial ideals (over a field) of arbitrary dimension is presented. In contrast to the only other approach based on Gröbner fan and Gröbner walk for positive dimensional ideals, the proposed approach is simpler to understand, prove, and implement. It is based on defining for a given polynomial, a truncated sub-polynomial consisting of all monomials that can possibly become the leading monomial with respect to the target ordering: the monomials between the leading monomial of the target ordering and the leading monomial of the initial ordering.
The main ingredient of the new algorithm is the computation of a Gröbner basis with respect to the target ordering for the ideal generated by such truncated parts of the input Gröbner basis. This is done using the extended Buchberger algorithm that also outputs the relationship between the input and output bases. That information is used in attempts to recover a Gröbner basis of the ideal with respect to the target ordering. In general, more than one iteration may be needed to get a Gröbner basis with respect to the target ordering since truncated polynomials may miss some leading monomials.
The new algorithm has been implemented in Maple and its operation is illustrated using an example. The performance of this implementation is compared with the implementations of other approaches in Maple. In practice, a Gröbner basis with respect to a target ordering can be computed in a single iteration on most examples.
Since the proposed basis conversion algorithm uses simple concepts of Gröbner basis theory, it can be easily taught in contrast to methods based on Gröbner walk.
本文提出了一种转换任意维度多项式理想(在一个域上)的格罗布纳基的新方法。与其他唯一基于格罗伯纳扇形和格罗伯纳走正维理想的方法相比,所提出的方法更易于理解、证明和实施。它的基础是为给定的多项式定义一个截断的子多项式,该子多项式由所有可能成为目标排序的前导单项式的单项式组成:目标排序的前导单项式和初始排序的前导单项式之间的单项式。计算是通过扩展的布赫伯格算法完成的,该算法还能输出输入和输出基础之间的关系。这些信息将被用于恢复与目标排序相关的理想格罗伯纳基。一般来说,由于截断多项式可能会遗漏一些前导单项式,因此可能需要不止一次迭代才能得到与目标排序相关的格罗伯纳基。新算法已在 Maple 中实现,并通过一个例子对其操作进行了说明。该实现方法的性能与 Maple 中其他方法的实现方法进行了比较。实际上,在大多数例子中,一次迭代就可以计算出与目标排序相关的格罗伯纳基础。由于所提出的基础转换算法使用的是格罗伯纳基础理论的简单概念,因此与基于格罗伯纳行走的方法相比,它很容易教授。
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引用次数: 0
Chebyshev subdivision and reduction methods for solving multivariable systems of equations 求解多元方程组的切比雪夫细分和还原法
IF 0.6 4区 数学 Q4 COMPUTER SCIENCE, THEORY & METHODS Pub Date : 2024-10-03 DOI: 10.1016/j.jsc.2024.102392
Erik Parkinson , Kate Wall , Jane Slagle , Daniel Treuhaft , Xander de la Bruere , Samuel Goldrup , Timothy Keith , Peter Call , Tyler J. Jarvis
We present a new algorithm for finding isolated zeros of a system of real-valued functions in a bounded interval in Rn. It uses the Chebyshev proxy method combined with a mixture of subdivision, reduction methods, and elimination checks that leverage special properties of Chebyshev polynomials. We prove the method has quadratic convergence locally near simple zeros of the system. It also finds all nonsimple zeros, but convergence to those zeros is not guaranteed to be quadratic. We also analyze the arithmetic complexity and the numerical stability of the algorithm and provide numerical evidence in dimensions up to five that the method is both fast and accurate on a wide range of problems. Our tests show that the algorithm outperforms other standard methods on the problem of finding all real zeros in a bounded domain. Our Python implementation of the algorithm is publicly available at https://github.com/tylerjarvis/RootFinding.
我们提出了一种在 Rn 有界区间内寻找实值函数系统孤立零点的新算法。它使用了切比雪夫代理法,并结合了细分、还原方法和消元检查等方法,充分利用了切比雪夫多项式的特殊性质。我们证明了该方法在系统的简单零点附近具有二次收敛性。它还能找到所有非简单零点,但不能保证对这些零点的收敛是二次收敛。我们还分析了算法的算术复杂性和数值稳定性,并提供了多达五维的数值证据,证明该方法在广泛的问题上既快又准。我们的测试表明,在寻找有界域中所有实零点的问题上,该算法优于其他标准方法。我们的 Python 算法实现可在 https://github.com/tylerjarvis/RootFinding 公开获取。
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引用次数: 0
Self-intersections of surfaces that contain two circles through each point 每点包含两个圆的曲面的自交点
IF 0.6 4区 数学 Q4 COMPUTER SCIENCE, THEORY & METHODS Pub Date : 2024-09-27 DOI: 10.1016/j.jsc.2024.102390
Niels Lubbes
We classify the singular loci of real surfaces in three-space that contain two circles through each point. We characterize how a circle in such a surface meets this loci as it moves in its pencil and as such provide insight into the topology of the surface.
我们对三维空间中每个点都包含两个圆的实曲面的奇异位置进行了分类。我们描述了这样的曲面中的圆在其笔尖移动时如何遇到这些奇异点,从而为曲面的拓扑学提供了见解。
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引用次数: 0
Asymptotics of solutions of special second-order linear recurrencies with polynomial coefficients and boundary effects of polynomial filters 具有多项式系数的特殊二阶线性回归方程解的渐近性和多项式滤波器的边界效应
IF 0.6 4区 数学 Q4 COMPUTER SCIENCE, THEORY & METHODS Pub Date : 2024-09-26 DOI: 10.1016/j.jsc.2024.102386
Alexey A. Kytmanov , Sergey P. Tsarev
In this paper we prove that classical discrete orthogonal polynomials (Hahn polynomials on an equidistant grid with unit weights) of high degrees have extremely small values near the endpoints (we call this property “rapid decay near the endpoints”) but extremely large values between these grid points and their roots are very close to the grid points near the endpoints. These results imply important general boundary effects for stable linear polynomial filters (we call this property “rapid boundary attenuation”).
Our results give interesting examples of nontrivial asymptotics of practically important solutions of special second-order linear recurrencies with polynomial coefficients studied by M.Petkovšek; to his memory we dedicate this paper.
在本文中,我们证明了经典的高次离散正交多项式(等距网格上的哈恩多项式,具有单位权重)在端点附近具有极小的值(我们称这一特性为 "端点附近快速衰减"),但在这些网格点和它们的根非常靠近端点附近的网格点之间具有极大的值。这些结果意味着稳定的线性多项式滤波器具有重要的一般边界效应(我们称这一特性为 "快速边界衰减")。我们的结果给出了 M.Petkovšek 所研究的具有多项式系数的特殊二阶线性递归的实际重要解的非难渐近的有趣例子;我们将本文献给他。
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引用次数: 0
An m-adic algorithm for bivariate Gröbner bases 二元格氏基的 m-adic 算法
IF 0.6 4区 数学 Q4 COMPUTER SCIENCE, THEORY & METHODS Pub Date : 2024-09-26 DOI: 10.1016/j.jsc.2024.102389
Éric Schost , Catherine St-Pierre
Let A be a domain, with mA a maximal ideal, and let FA[x,y] be any finite generating set of an ideal with finitely many roots (in an algebraic closure of the fraction field K of A). We present a randomized m-adic algorithm to recover the lexicographic Gröbner basis G of FK[x,y], or of its primary component at the origin. We observe that previous results of Lazard's that use Hermite normal forms to compute Gröbner bases for ideals with two generators can be generalized to a generating set F of cardinality greater than two. We use this result to bound the size of the coefficients of G, and to control the probability of choosing a good maximal ideal mA. We give a complete cost analysis over number fields (K=Q(α)) and function fields (
), and we obtain a complexity that is less than cubic in terms of the dimension of K/G and softly linear in the size of its coefficients.
设 A 是一个域,m⊆A 是一个最大理想,设 F⊆A[x,y]是具有有限多个根(在 A 的分数域 K 的代数闭包中)的理想的任意有限生成集。我们提出了一种随机 m-adic 算法来恢复〈F〉⊆K[x,y]的词典格罗伯纳基 G 或其在原点的主成分。我们注意到,拉扎德之前利用赫米特正则表达式计算有两个生成子的理想的格罗伯纳基的结果,可以推广到心数大于两个的生成集 F。我们利用这一结果来约束 G 的系数大小,并控制选择一个好的最大理想 m⊆A 的概率。我们对数域(K=Q(α))和函数域()进行了完整的代价分析,得到的复杂度小于 K/〈G〉维数的立方,与其系数的大小呈软线性关系。
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引用次数: 0
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Journal of Symbolic Computation
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