Pub Date : 2024-09-18DOI: 10.1080/23802359.2024.2405531
Junyuan Li, Kuidong Xu, Yang Li
The complete mitochondrial genome of Paragorgia papillata Li et al. 2021, a deep-sea gorgonian inhabiting at 858 m in Caroline Ridge, was obtained in this study. The length of the mitochondrial gen...
{"title":"The complete mitochondrial genome of the bubble-gum coral Paragorgia papillata (Octocorallia: Coralliidae) from the seamount in the tropical Western Pacific","authors":"Junyuan Li, Kuidong Xu, Yang Li","doi":"10.1080/23802359.2024.2405531","DOIUrl":"https://doi.org/10.1080/23802359.2024.2405531","url":null,"abstract":"The complete mitochondrial genome of Paragorgia papillata Li et al. 2021, a deep-sea gorgonian inhabiting at 858 m in Caroline Ridge, was obtained in this study. The length of the mitochondrial gen...","PeriodicalId":501052,"journal":{"name":"Mitochondrial DNA Part B","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142247575","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-18DOI: 10.1080/23802359.2024.2405528
Eleonora Manzo, Salvatore Tomasello
Anthemis L. 1753 is a species-rich genus of Asteraceae. It includes species of economic value as ornamental, edible and medicinal plants. We report here the complete chloroplast genome of Anthemis ...
Anthemis L. 1753 是菊科中一个物种丰富的属。它包括具有经济价值的观赏植物、食用植物和药用植物。我们在此报告了 Anthemis 的完整叶绿体基因组 ...
{"title":"The first complete chloroplast genome for the species-rich genus Anthemis (Asteraceae)","authors":"Eleonora Manzo, Salvatore Tomasello","doi":"10.1080/23802359.2024.2405528","DOIUrl":"https://doi.org/10.1080/23802359.2024.2405528","url":null,"abstract":"Anthemis L. 1753 is a species-rich genus of Asteraceae. It includes species of economic value as ornamental, edible and medicinal plants. We report here the complete chloroplast genome of Anthemis ...","PeriodicalId":501052,"journal":{"name":"Mitochondrial DNA Part B","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142247574","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pilea notata (Pilea notata C. H. Wright_C. H. Wright, 1899) is Pilea Lindl. of Urticaceae, which is a commonly used Miao medicine in Guizhou province. The P. notata chloroplast genome is 150,979 bp...
Pilea notata（Pilea notata C. H. Wright_C.H.Wright，1899）为荨麻科 Pilea Lindl.属植物，是贵州省苗族常用药物。P. notata叶绿体基因组为 150,979 bp...
{"title":"The complete chloroplast genome of Pilea notata C. H. Wright, 1899 (Urticaceae)","authors":"Ni Zhao, Linya Liu, Shudong Zhang, Chao Zhao, Xiaojian Gong, Yacheng Huang","doi":"10.1080/23802359.2024.2392762","DOIUrl":"https://doi.org/10.1080/23802359.2024.2392762","url":null,"abstract":"Pilea notata (Pilea notata C. H. Wright_C. H. Wright, 1899) is Pilea Lindl. of Urticaceae, which is a commonly used Miao medicine in Guizhou province. The P. notata chloroplast genome is 150,979 bp...","PeriodicalId":501052,"journal":{"name":"Mitochondrial DNA Part B","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142268193","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-16DOI: 10.1080/23802359.2024.2404210
Miao Zhang,Chen Kang,Kun Xing,Fei Zhao
Rhopalosiphum maidis Fitch, 1856 is widespread in tropical and temperate regions. R. maidis can spread viral diseases in maize and harm various important crops. In the present study, we report the first complete mitochondrial genome of R. maidis. The circular genome is found to be 17,021 bp in length, includes a standard set of 22 transfer RNAs, two ribosomal RNAs, 13 protein-coding genes, and two non-coding control regions. The base composition is 84.32% AT and 15.79% GC. The phylogenetic tree of the 17 Aphidini families constructed based on the nucleotide sequences of complete mitochondrial genomes strongly supports the conclusion that R. maidis is closely related to R. rufiabdominalis.
Rhopalosiphum maidis Fitch, 1856 广泛分布于热带和温带地区。R.maidis可传播玉米病毒病，危害多种重要作物。在本研究中，我们首次报告了 R. maidis 的完整线粒体基因组。该环状基因组长度为 17,021 bp，包括一组标准的 22 个转移 RNA、2 个核糖体 RNA、13 个蛋白编码基因和 2 个非编码控制区。碱基组成中 AT 占 84.32%，GC 占 15.79%。根据完整线粒体基因组的核苷酸序列构建的 17 个蚜科的系统发生树有力地支持了 R. maidis 与 R. rufiabdominalis 关系密切的结论。
{"title":"Complete mitochondrial genome of Rhopalosiphum maidis (Hemiptera: Aphididae) and its phylogenetic implications.","authors":"Miao Zhang,Chen Kang,Kun Xing,Fei Zhao","doi":"10.1080/23802359.2024.2404210","DOIUrl":"https://doi.org/10.1080/23802359.2024.2404210","url":null,"abstract":"Rhopalosiphum maidis Fitch, 1856 is widespread in tropical and temperate regions. R. maidis can spread viral diseases in maize and harm various important crops. In the present study, we report the first complete mitochondrial genome of R. maidis. The circular genome is found to be 17,021 bp in length, includes a standard set of 22 transfer RNAs, two ribosomal RNAs, 13 protein-coding genes, and two non-coding control regions. The base composition is 84.32% AT and 15.79% GC. The phylogenetic tree of the 17 Aphidini families constructed based on the nucleotide sequences of complete mitochondrial genomes strongly supports the conclusion that R. maidis is closely related to R. rufiabdominalis.","PeriodicalId":501052,"journal":{"name":"Mitochondrial DNA Part B","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142247576","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-16DOI: 10.1080/23802359.2024.2403407
Guangjie Song, Yongqiang Wang, Qiurong Ruan, Daw ei Cai
The ancient mitochondrial genome of a Siberian roe deer (Capreolus pygargus) coded as NJ26S from Jartai Pass Site was obtained by high throughput sequencing. The damage pattern demonstrated the aut...
{"title":"The ancient mitochondrial genome of a Siberian roe deer (Capreolus pygargus) from Jartai Pass Site in Xinjiang, China, and its phylogenetic relationships","authors":"Guangjie Song, Yongqiang Wang, Qiurong Ruan, Daw ei Cai","doi":"10.1080/23802359.2024.2403407","DOIUrl":"https://doi.org/10.1080/23802359.2024.2403407","url":null,"abstract":"The ancient mitochondrial genome of a Siberian roe deer (Capreolus pygargus) coded as NJ26S from Jartai Pass Site was obtained by high throughput sequencing. The damage pattern demonstrated the aut...","PeriodicalId":501052,"journal":{"name":"Mitochondrial DNA Part B","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142247573","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-16DOI: 10.1080/23802359.2024.2403410
Xuan Zhou,Jian-Hua Ma,Jun-Yi Zhang,Li Luan,Lin Li,Yun-Dong Gao,Yu Feng
Lilium saccatum is a species of ornamental plant found in southeastern Xizang, China. In the present study, the complete chloroplast (cp) genome of L. saccatum was sequenced using next-generation sequencing (NGS). The de novo assembled cp genome was 151,839 bp in length, including a pair of inverted repeat regions (IRs; 26,421 bp), a small single-copy region (SSC; 17,528 bp), and a large single-copy region (LSC; 81,469 bp). The cp genome encodes 113 unique genes, including 79 protein-coding genes (PCGs), 30 tRNA genes, and four rRNA genes. The total GC content of the cp genome was 37.0%. Phylogenetic analysis of 24 cp genomes revealed that L. saccatum was closely related to L. souliei. This study could provide fundamental information for the phylogenomics and utilization of Lilium.
{"title":"The complete chloroplast genome sequence of Lilium saccatum S. Yun Liang (Liliaceae, Lilieae) and its phylogenetic analysis.","authors":"Xuan Zhou,Jian-Hua Ma,Jun-Yi Zhang,Li Luan,Lin Li,Yun-Dong Gao,Yu Feng","doi":"10.1080/23802359.2024.2403410","DOIUrl":"https://doi.org/10.1080/23802359.2024.2403410","url":null,"abstract":"Lilium saccatum is a species of ornamental plant found in southeastern Xizang, China. In the present study, the complete chloroplast (cp) genome of L. saccatum was sequenced using next-generation sequencing (NGS). The de novo assembled cp genome was 151,839 bp in length, including a pair of inverted repeat regions (IRs; 26,421 bp), a small single-copy region (SSC; 17,528 bp), and a large single-copy region (LSC; 81,469 bp). The cp genome encodes 113 unique genes, including 79 protein-coding genes (PCGs), 30 tRNA genes, and four rRNA genes. The total GC content of the cp genome was 37.0%. Phylogenetic analysis of 24 cp genomes revealed that L. saccatum was closely related to L. souliei. This study could provide fundamental information for the phylogenomics and utilization of Lilium.","PeriodicalId":501052,"journal":{"name":"Mitochondrial DNA Part B","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142247577","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-15DOI: 10.1080/23802359.2024.2404211
Hong Tian,Weimin Han,Luling Li,Xiaodong Shi,Xu Han,Yamei Wei,Yanan Cai,Zhanying Han,Yanbo Zhang,Yonggang Xu,Qi Li,Shiyou Liu
Rattus tanezumi (Niethammer, 1975) is one of the commensal rodent species in South China. With the development of transportation and climate change, R. tanezumi has gradually migrated north and become the dominant rat species for the past few years. In this study, we assembled a complete mitochondrial genome of R. tanezumi, captured from North China. The mitogenome contains 16,307 nucleotide pairs, including 13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes, as well as one non-coding control region. Based on whole mitogenome phylogenetical analysis showed that R. tanezumi captured from North China had a close phylogenetic relationship with that from Japan and South Korea. These findings are valuable for further studies on the evolution, genetic diversity, and taxonomy of Asian commensal rodent.
{"title":"The complete mitochondrial genome and phylogenetic analysis of Rattus tanezumi (Niethammer, 1975), captured from North China.","authors":"Hong Tian,Weimin Han,Luling Li,Xiaodong Shi,Xu Han,Yamei Wei,Yanan Cai,Zhanying Han,Yanbo Zhang,Yonggang Xu,Qi Li,Shiyou Liu","doi":"10.1080/23802359.2024.2404211","DOIUrl":"https://doi.org/10.1080/23802359.2024.2404211","url":null,"abstract":"Rattus tanezumi (Niethammer, 1975) is one of the commensal rodent species in South China. With the development of transportation and climate change, R. tanezumi has gradually migrated north and become the dominant rat species for the past few years. In this study, we assembled a complete mitochondrial genome of R. tanezumi, captured from North China. The mitogenome contains 16,307 nucleotide pairs, including 13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes, as well as one non-coding control region. Based on whole mitogenome phylogenetical analysis showed that R. tanezumi captured from North China had a close phylogenetic relationship with that from Japan and South Korea. These findings are valuable for further studies on the evolution, genetic diversity, and taxonomy of Asian commensal rodent.","PeriodicalId":501052,"journal":{"name":"Mitochondrial DNA Part B","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142268249","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-12DOI: 10.1080/23802359.2024.2403413
Yuchen Yang, Jun Li, Zhixiang Zhang, Mengxue Zhang
Elaeagnus bambusetorum Hand.-Mazz. is a rare plant from China in the Elaeagnaceae family. In this study, we sequenced its complete chloroplast genome. The whole chloroplast genome was 152,265 bp in...
{"title":"The complete chloroplast genome of Elaeagnus bambusetorum hand.-mazz. 1933 and its implications for phylogenetic relationships in the Elaeagnus genus","authors":"Yuchen Yang, Jun Li, Zhixiang Zhang, Mengxue Zhang","doi":"10.1080/23802359.2024.2403413","DOIUrl":"https://doi.org/10.1080/23802359.2024.2403413","url":null,"abstract":"Elaeagnus bambusetorum Hand.-Mazz. is a rare plant from China in the Elaeagnaceae family. In this study, we sequenced its complete chloroplast genome. The whole chloroplast genome was 152,265 bp in...","PeriodicalId":501052,"journal":{"name":"Mitochondrial DNA Part B","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142247633","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-12DOI: 10.1080/23802359.2024.2403411
Magriet A. van der Nest, Emma T. Steenkamp, Lieschen De Vos, Raven Wienk, Velushka Swart, Noëlani van den Berg
The mitochondrial genome of Dematophora necatrix is 121,350 base pairs in length with a G + C content of 30.19%. Phylogenetic analysis showed that D. necatrix grouped with other members of the Xyla...
{"title":"Complete mitochondrial genome sequence of the white root rot pathogen Dematophora necatrix (Xylariaceae: Xylariales)","authors":"Magriet A. van der Nest, Emma T. Steenkamp, Lieschen De Vos, Raven Wienk, Velushka Swart, Noëlani van den Berg","doi":"10.1080/23802359.2024.2403411","DOIUrl":"https://doi.org/10.1080/23802359.2024.2403411","url":null,"abstract":"The mitochondrial genome of Dematophora necatrix is 121,350 base pairs in length with a G + C content of 30.19%. Phylogenetic analysis showed that D. necatrix grouped with other members of the Xyla...","PeriodicalId":501052,"journal":{"name":"Mitochondrial DNA Part B","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142247578","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-12DOI: 10.1080/23802359.2024.2403409
Jing He,Huijuan Qu,Youqiao Yu,Jingwei Huang
The filamentous fungus Talaromyces liani (Kamyschko) Yilmaz, Frisvad & Samson, 2014, has attracted considerable interest in biotechnology due to its diverse industrial applications and physiological characteristics. However, the mitochondrial genome of T. liani remains uncharacterized. Here, we present the complete mitochondrial genome of T. liani, comprising 38,000 bp with a GC content of 24.61%. This genome includes 15 core protein-coding genes, 4 independent ORFs, 6 intronic ORFs, 26 tRNAs, and 2 rRNA genes. Phylogenetic analysis using Bayesian inference (BI) revealed the evolutionary relationships among 15 fungi from Eurotiales, strongly supporting distinct clades and indicating that T. liani most closely related to T. pinophilus.
丝状真菌 Talaromyces liani (Kamyschko) Yilmaz、Frisvad 和 Samson，2014 年，由于其多样化的工业应用和生理特征，在生物技术领域引起了相当大的兴趣。然而，T. liani 的线粒体基因组仍未定性。在此，我们展示了 T. liani 的完整线粒体基因组，该基因组由 38,000 bp 组成，GC 含量为 24.61%。该基因组包括 15 个核心蛋白编码基因、4 个独立 ORF、6 个内含子 ORF、26 个 tRNA 和 2 个 rRNA 基因。利用贝叶斯推断法（BI）进行的系统进化分析揭示了欧洲真菌门中 15 种真菌之间的进化关系，有力地支持了不同的支系，并表明 T. liani 与 T. pinophilus 的亲缘关系最为密切。
{"title":"Characterization and phylogenetic analysis of the Talaromyces liani (kamyschko) Yilmaz, Frisvad & Samson, 2014 (Eurotiales: trichocomaceae) mitochondrial genome.","authors":"Jing He,Huijuan Qu,Youqiao Yu,Jingwei Huang","doi":"10.1080/23802359.2024.2403409","DOIUrl":"https://doi.org/10.1080/23802359.2024.2403409","url":null,"abstract":"The filamentous fungus Talaromyces liani (Kamyschko) Yilmaz, Frisvad & Samson, 2014, has attracted considerable interest in biotechnology due to its diverse industrial applications and physiological characteristics. However, the mitochondrial genome of T. liani remains uncharacterized. Here, we present the complete mitochondrial genome of T. liani, comprising 38,000 bp with a GC content of 24.61%. This genome includes 15 core protein-coding genes, 4 independent ORFs, 6 intronic ORFs, 26 tRNAs, and 2 rRNA genes. Phylogenetic analysis using Bayesian inference (BI) revealed the evolutionary relationships among 15 fungi from Eurotiales, strongly supporting distinct clades and indicating that T. liani most closely related to T. pinophilus.","PeriodicalId":501052,"journal":{"name":"Mitochondrial DNA Part B","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142247627","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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