Based on the latest molecular phylogenies of Gonyosoma sensu lato, which recovered five clades with robust support, we utilize morphological characters to demonstrate the distinctiveness of each clade, resulting in the resurrection of three genera (Gonyophis Boulenger, 1891; Rhynchophis Mocquard, 1897; and Rhadinophis Vogt, 1922) and a proposal of a new genus and a new tribe. A synopsis of the group, with descriptions and diagnoses, is provided for the five genera and eight species in addition to distribution maps and illustrations of the head of each taxon. An artificial key to the species and genera in the new tribe is presented in addition to the estimated origin times for each clade.
基于最新的 Gonyosoma sensu lato 分子系统进化，我们利用形态学特征证明了每个支系的独特性，从而恢复了三个属（Gonyophis Boulenger, 1891; Rhynchophis Mocquard, 1897; and Rhadinophis Vogt, 1922），并提出了一个新属和一个新族。除了分布图和每种分类群的头部插图外，还提供了五属八种的类群简介、描述和诊断。除了每个支系的估计起源时间外，还提供了新支系中种和属的人工检索表。
{"title":"Revalidation of the Arboreal Asian Snake Genera Gonyophis Boulenger, 1891; Rhynchophis Mocquard, 1897; and Rhadinophis Vogt, 1922, with Description of a New Genus and Tribe (Squamata: Serpentes: Colubridae)","authors":"Van Wallach, Rune Midtgaard, Emma Hsiao","doi":"10.3390/d16090576","DOIUrl":"https://doi.org/10.3390/d16090576","url":null,"abstract":"Based on the latest molecular phylogenies of Gonyosoma sensu lato, which recovered five clades with robust support, we utilize morphological characters to demonstrate the distinctiveness of each clade, resulting in the resurrection of three genera (Gonyophis Boulenger, 1891; Rhynchophis Mocquard, 1897; and Rhadinophis Vogt, 1922) and a proposal of a new genus and a new tribe. A synopsis of the group, with descriptions and diagnoses, is provided for the five genera and eight species in addition to distribution maps and illustrations of the head of each taxon. An artificial key to the species and genera in the new tribe is presented in addition to the estimated origin times for each clade.","PeriodicalId":501149,"journal":{"name":"Diversity","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142198557","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Alan Barrett, Lorraine Raby Bronkhorst, Leslie Brown
Swahili coastal forests, spanning the Kenyan and Tanzanian coastlines and the Zanzibar Archipelago, are integral to the biodiverse Eastern Arc and Coastal Forest region. These forest ecosystems face considerable anthropogenic threats. This study contributes to the available knowledge on the floral composition and plant community assemblages of Mnemba Island, a small sandy cay in the Zanzibar Archipelago, which helps to establish baseline data for conservation purposes. Two main coastal forest plant communities were identified: (1) the Casuarina cunninghamiana–Suriana maritima open to closed sandy dry coastal forest, and (2) the Eugenia capensis–Mimusops obtusifolia coastal forest. A total of 91 different plant species belonging to 54 plant families were identified for the island. Community 2, an indigenous forest, supports diverse bird breeding colonies and is a crucial habitat for the threatened Aders’ duiker. Understory development is limited due to the historical Suni antelope overpopulation. Environmental factors like salt spray, allelochemicals, herbivore browsing, and climate fluctuations influence the vegetation abundance and composition. The study underscores differences in species diversity and composition between the planted Casuarina community and the natural atoll vegetation. The natural vegetation shows affinities with the Zanzibar–Inhambane edaphic coral-rag scrub forest and the transitional rainforest. Several species characteristic of Indian Ocean atolls were identified, providing insights into invasion ecology and conservation strategies. The study contributes conceptually to our understanding of vegetation dynamics in island ecosystems by highlighting the interplay between plant communities, environmental processes, and human activities. The fragile yet resilient nature of Mnemba’s unique ecosystem is emphasised, offering insights for conservation management, long-term monitoring, and adaptive approaches tailored to island environments.
{"title":"A Contribution to the Study of the Flora and Vegetation of Mnemba Island, Zanzibar","authors":"Alan Barrett, Lorraine Raby Bronkhorst, Leslie Brown","doi":"10.3390/d16090579","DOIUrl":"https://doi.org/10.3390/d16090579","url":null,"abstract":"Swahili coastal forests, spanning the Kenyan and Tanzanian coastlines and the Zanzibar Archipelago, are integral to the biodiverse Eastern Arc and Coastal Forest region. These forest ecosystems face considerable anthropogenic threats. This study contributes to the available knowledge on the floral composition and plant community assemblages of Mnemba Island, a small sandy cay in the Zanzibar Archipelago, which helps to establish baseline data for conservation purposes. Two main coastal forest plant communities were identified: (1) the Casuarina cunninghamiana–Suriana maritima open to closed sandy dry coastal forest, and (2) the Eugenia capensis–Mimusops obtusifolia coastal forest. A total of 91 different plant species belonging to 54 plant families were identified for the island. Community 2, an indigenous forest, supports diverse bird breeding colonies and is a crucial habitat for the threatened Aders’ duiker. Understory development is limited due to the historical Suni antelope overpopulation. Environmental factors like salt spray, allelochemicals, herbivore browsing, and climate fluctuations influence the vegetation abundance and composition. The study underscores differences in species diversity and composition between the planted Casuarina community and the natural atoll vegetation. The natural vegetation shows affinities with the Zanzibar–Inhambane edaphic coral-rag scrub forest and the transitional rainforest. Several species characteristic of Indian Ocean atolls were identified, providing insights into invasion ecology and conservation strategies. The study contributes conceptually to our understanding of vegetation dynamics in island ecosystems by highlighting the interplay between plant communities, environmental processes, and human activities. The fragile yet resilient nature of Mnemba’s unique ecosystem is emphasised, offering insights for conservation management, long-term monitoring, and adaptive approaches tailored to island environments.","PeriodicalId":501149,"journal":{"name":"Diversity","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142262877","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Atanas Z. Atanasov, Boris I. Evstatiev, Asparuh I. Atanasov, Ivaylo S. Hristakov
Environmental pollution with pesticides as a result of intensive agriculture harms the development of bee colonies. Bees are one of the most important pollinating insects on our planet. One of the ways to protect them is to relocate and build apiaries in populated areas. An important condition for the development of bee colonies is the rich species diversity of flowering plants and the size of the areas occupied by them. In this study, a methodology for detecting and distinguishing white flowering nectar source trees and counting bee colonies is developed and demonstrated, applicable in populated environments. It is based on UAV-obtained RGB imagery and two convolutional neural networks—a pixel-based one for identification of flowering areas and an object-based one for beehive identification, which achieved accuracies of 93.4% and 95.2%, respectively. Based on an experimental study near the village of Yuper (Bulgaria), the productive potential of black locust (Robinia pseudoacacia) areas in rural and suburban environments was determined. The obtained results showed that the identified blooming area corresponds to 3.654 m2, out of 89.725 m2 that were scanned with the drone, and the number of identified beehives was 149. The proposed methodology will facilitate beekeepers in choosing places for the placement of new apiaries and planning activities of an organizational nature.
{"title":"Detection and Assessment of White Flowering Nectar Source Trees and Location of Bee Colonies in Rural and Suburban Environments Using Deep Learning","authors":"Atanas Z. Atanasov, Boris I. Evstatiev, Asparuh I. Atanasov, Ivaylo S. Hristakov","doi":"10.3390/d16090578","DOIUrl":"https://doi.org/10.3390/d16090578","url":null,"abstract":"Environmental pollution with pesticides as a result of intensive agriculture harms the development of bee colonies. Bees are one of the most important pollinating insects on our planet. One of the ways to protect them is to relocate and build apiaries in populated areas. An important condition for the development of bee colonies is the rich species diversity of flowering plants and the size of the areas occupied by them. In this study, a methodology for detecting and distinguishing white flowering nectar source trees and counting bee colonies is developed and demonstrated, applicable in populated environments. It is based on UAV-obtained RGB imagery and two convolutional neural networks—a pixel-based one for identification of flowering areas and an object-based one for beehive identification, which achieved accuracies of 93.4% and 95.2%, respectively. Based on an experimental study near the village of Yuper (Bulgaria), the productive potential of black locust (Robinia pseudoacacia) areas in rural and suburban environments was determined. The obtained results showed that the identified blooming area corresponds to 3.654 m2, out of 89.725 m2 that were scanned with the drone, and the number of identified beehives was 149. The proposed methodology will facilitate beekeepers in choosing places for the placement of new apiaries and planning activities of an organizational nature.","PeriodicalId":501149,"journal":{"name":"Diversity","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142198560","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Seamounts can have a strong influence on the distribution and diversity of species, creating an oasis effect that may favour diversification. In order to assess how and to what extent supra- and epibenthic crustaceans can colonise these environments, the eucarid and peracarid fauna collected from the summit of the Valencia Seamount (VS), a small deep seamount (summit depth: 1056 m), rising from a depth of ca. 1850 m, in the oligotrophic Balearic Basin, was analysed. Based on a first sampling (beam trawls, plankton nets and stomach contents), and a faunal reconstruction from a sediment core (MC2, at 1151 m), the supra(epi)benthic crustaceans at the VS summit (to 1300 m) were composed of nine Eucarida and 25 Peracarida. Polycheles typhlops, Munida tenuimana, and Aristeus antennatus were the dominant species among eucarids. Among Peracarida the most abundant species were the Mysida Boreomysis arctica, the Amphipoda Rhachtropis caeca, and the Isopoda Munnopsurus atlanticus. Among Decapoda, a species with a wide amplitude in their depth distribution and small eggs (i.e., with planktotrophic larvae), showed a higher colonisation capacity. In the absence of larvae, the colonisation of peracarids depends on the amplitude of their depth distribution and only those species that reach the highest depths in the entire Balearic Basin, at least 1600–1800 m, were able to colonise the summit of VS. The natatory capacity of the species also has some influence and whole groups with low natatory capacity, such as the Desmosomatidae, were completely absent on the VS summit; however, they are distributed throughout the Balearic Basin to depths (up to about 1500 m) exceeding the depth of the seamount summit. Therefore, colonisation by peracarids must not have occurred by swimming through the entire water column, but by swimming along or just above the bottom. Remains of some suprabenthic species (mainly the isopod M. atlanticus) in MC2 and another core collected in NW Mallorca (MC3, 1114 m), i.e., out of the VS, showed how isopod diversity and size distribution changed historically. Also, after the 1960s, a decrease in primary production due to a decrease in rainfall and river runoff associated with river damming could have reduced the abundance of M. atlanticus. These types of historical studies can be useful in interpreting long-term changes in deep-sea communities and optimising the management of these vulnerable areas.
{"title":"Eucarid and Peracarid Fauna of the Valencia Seamount, a Deep-Isolated Seamount of the Western Mediterranean: Colonisation Capacity and Historical Changes","authors":"Joan E. Cartes","doi":"10.3390/d16090582","DOIUrl":"https://doi.org/10.3390/d16090582","url":null,"abstract":"Seamounts can have a strong influence on the distribution and diversity of species, creating an oasis effect that may favour diversification. In order to assess how and to what extent supra- and epibenthic crustaceans can colonise these environments, the eucarid and peracarid fauna collected from the summit of the Valencia Seamount (VS), a small deep seamount (summit depth: 1056 m), rising from a depth of ca. 1850 m, in the oligotrophic Balearic Basin, was analysed. Based on a first sampling (beam trawls, plankton nets and stomach contents), and a faunal reconstruction from a sediment core (MC2, at 1151 m), the supra(epi)benthic crustaceans at the VS summit (to 1300 m) were composed of nine Eucarida and 25 Peracarida. Polycheles typhlops, Munida tenuimana, and Aristeus antennatus were the dominant species among eucarids. Among Peracarida the most abundant species were the Mysida Boreomysis arctica, the Amphipoda Rhachtropis caeca, and the Isopoda Munnopsurus atlanticus. Among Decapoda, a species with a wide amplitude in their depth distribution and small eggs (i.e., with planktotrophic larvae), showed a higher colonisation capacity. In the absence of larvae, the colonisation of peracarids depends on the amplitude of their depth distribution and only those species that reach the highest depths in the entire Balearic Basin, at least 1600–1800 m, were able to colonise the summit of VS. The natatory capacity of the species also has some influence and whole groups with low natatory capacity, such as the Desmosomatidae, were completely absent on the VS summit; however, they are distributed throughout the Balearic Basin to depths (up to about 1500 m) exceeding the depth of the seamount summit. Therefore, colonisation by peracarids must not have occurred by swimming through the entire water column, but by swimming along or just above the bottom. Remains of some suprabenthic species (mainly the isopod M. atlanticus) in MC2 and another core collected in NW Mallorca (MC3, 1114 m), i.e., out of the VS, showed how isopod diversity and size distribution changed historically. Also, after the 1960s, a decrease in primary production due to a decrease in rainfall and river runoff associated with river damming could have reduced the abundance of M. atlanticus. These types of historical studies can be useful in interpreting long-term changes in deep-sea communities and optimising the management of these vulnerable areas.","PeriodicalId":501149,"journal":{"name":"Diversity","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142198562","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
L. Mark Elbroch, Byron V. Weckworth, Kristine Pilgrim, Omar Ohrens, Nicolás Lagos, Stephanny Arroyo-Arce, Mauricio Montt, Dania Goic, Michael K. Schwartz
Physical and genetic isolation are recognized as significant threats to wildlife, especially in large carnivores inhabiting fragmented landscapes. We conducted an initial genetic assessment of pumas (Puma concolor) using 19 microsatellite loci for the emblematic puma population in the Torres del Paine UNESCO Biosphere Reserve in southernmost Chile, which exhibits some distinctive phenology that some local people speculate may be due to isolation and inbreeding depression. We extracted DNA from 385 scats collected in the field, of which 96 were identified as puma, representing 20 unique individuals. Torres del Paine pumas exhibited an Ho (0.51) only slightly lower than He (0.53), with 2 of the 19 loci significantly out of Hardy–Weinberg Equilibrium. Tests for a recent bottleneck of the population were not significant. The small sample size of individuals notwithstanding, these results seemingly do not support high levels of inbreeding. We also identified individual pumas in the field and assessed them for observable cowlicks (twirls of fur on their backs), a trait some have associated with genetic inbreeding depression in other puma populations. A total of 7 of 39 pumas exhibited cowlicks, consistent with geographic patterns of cowlicks within the species. Our tests exploring population structure among local pumas provided the most support for a single-population cluster, but we explored secondary structures as well, given its conservation implications. We encourage additional sampling in the region to further explore population structure and connectivity and determine the conservation status of the region’s pumas to guide the development of best strategies to ensure their persistence.
{"title":"An Initial Genetic Assessment of the Emblematic Pumas of the Torres del Paine UNESCO Biosphere Reserve","authors":"L. Mark Elbroch, Byron V. Weckworth, Kristine Pilgrim, Omar Ohrens, Nicolás Lagos, Stephanny Arroyo-Arce, Mauricio Montt, Dania Goic, Michael K. Schwartz","doi":"10.3390/d16090581","DOIUrl":"https://doi.org/10.3390/d16090581","url":null,"abstract":"Physical and genetic isolation are recognized as significant threats to wildlife, especially in large carnivores inhabiting fragmented landscapes. We conducted an initial genetic assessment of pumas (Puma concolor) using 19 microsatellite loci for the emblematic puma population in the Torres del Paine UNESCO Biosphere Reserve in southernmost Chile, which exhibits some distinctive phenology that some local people speculate may be due to isolation and inbreeding depression. We extracted DNA from 385 scats collected in the field, of which 96 were identified as puma, representing 20 unique individuals. Torres del Paine pumas exhibited an Ho (0.51) only slightly lower than He (0.53), with 2 of the 19 loci significantly out of Hardy–Weinberg Equilibrium. Tests for a recent bottleneck of the population were not significant. The small sample size of individuals notwithstanding, these results seemingly do not support high levels of inbreeding. We also identified individual pumas in the field and assessed them for observable cowlicks (twirls of fur on their backs), a trait some have associated with genetic inbreeding depression in other puma populations. A total of 7 of 39 pumas exhibited cowlicks, consistent with geographic patterns of cowlicks within the species. Our tests exploring population structure among local pumas provided the most support for a single-population cluster, but we explored secondary structures as well, given its conservation implications. We encourage additional sampling in the region to further explore population structure and connectivity and determine the conservation status of the region’s pumas to guide the development of best strategies to ensure their persistence.","PeriodicalId":501149,"journal":{"name":"Diversity","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142198561","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Hao Pan, He Zhang, Dionisios Youlatos, Jing Wang, Gang He, Songtao Guo, Kang Huang, Rong Hou, Ruliang Pan, Gu Fang, Yuli Li, Pei Zhang, Baoguo Li
The evolutionary development and phylogenetic division between Asian and African cercopithecoids (Cercopithecidae) have attracted significant attention in genetics, molecular biology, behavior, and morphology. However, less emphasis has been placed on how they have evolved morphologically after divergence, approximately 10 million years ago (mya) for Colobinae and 5–7 mya for Cercopithecinae, corresponding to the significant variation and diversity in landscape, climate, habitat, and ecologies between the two continents. This study examines whether such variation and diversity have been reflected in dental morphology. Our findings reveal substantial differences between Hylobatidae and Cercopithecidae, as well as between Colobinae and Cercopithecinae, indicating that size-adjusted dental variation mainly reveals the diversity associated with evolution and phylogenetic inertia. Interestingly, despite the earlier divergence of Afro-Asian colobines, their Euclidean Distance is comparable to that of Afro-Asian cercopithecines. This implies that latecomers (macaques) demonstrate equivalent diversity to colobines due to their extensive dispersion and broader adaptative radiation on the same continent. Colobinae exhibit more developed premolar and molar regions. However, when post-canine teeth are considered alone, Colobinae present a significantly larger molar size than Asian Cercopithecinae but not with the African Cercopihecinae. This contradicts the hypothesis that folivorous primates (Colobinae) have larger post-canine molars than frugivorous ones (Cercopithecinae). The considerable molar size in African Cercopithecinae must be associated with their more protrusive and larger facial structure rather than a specific dietary preference, being less diverse than their Asian counterparts—a trait that has evolved phylogenetically. This study also paves the way for further exploration of facial and cranial differences between the continental groups of Cercopithecinae and Colobinae, delving deeply into diversity variation due to geographical and climatic adaptations.
{"title":"Evolutionary Insights from Dental Diversity in Afro-Asian Primates","authors":"Hao Pan, He Zhang, Dionisios Youlatos, Jing Wang, Gang He, Songtao Guo, Kang Huang, Rong Hou, Ruliang Pan, Gu Fang, Yuli Li, Pei Zhang, Baoguo Li","doi":"10.3390/d16090565","DOIUrl":"https://doi.org/10.3390/d16090565","url":null,"abstract":"The evolutionary development and phylogenetic division between Asian and African cercopithecoids (Cercopithecidae) have attracted significant attention in genetics, molecular biology, behavior, and morphology. However, less emphasis has been placed on how they have evolved morphologically after divergence, approximately 10 million years ago (mya) for Colobinae and 5–7 mya for Cercopithecinae, corresponding to the significant variation and diversity in landscape, climate, habitat, and ecologies between the two continents. This study examines whether such variation and diversity have been reflected in dental morphology. Our findings reveal substantial differences between Hylobatidae and Cercopithecidae, as well as between Colobinae and Cercopithecinae, indicating that size-adjusted dental variation mainly reveals the diversity associated with evolution and phylogenetic inertia. Interestingly, despite the earlier divergence of Afro-Asian colobines, their Euclidean Distance is comparable to that of Afro-Asian cercopithecines. This implies that latecomers (macaques) demonstrate equivalent diversity to colobines due to their extensive dispersion and broader adaptative radiation on the same continent. Colobinae exhibit more developed premolar and molar regions. However, when post-canine teeth are considered alone, Colobinae present a significantly larger molar size than Asian Cercopithecinae but not with the African Cercopihecinae. This contradicts the hypothesis that folivorous primates (Colobinae) have larger post-canine molars than frugivorous ones (Cercopithecinae). The considerable molar size in African Cercopithecinae must be associated with their more protrusive and larger facial structure rather than a specific dietary preference, being less diverse than their Asian counterparts—a trait that has evolved phylogenetically. This study also paves the way for further exploration of facial and cranial differences between the continental groups of Cercopithecinae and Colobinae, delving deeply into diversity variation due to geographical and climatic adaptations.","PeriodicalId":501149,"journal":{"name":"Diversity","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142198563","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
During the present study, DNA sequence and morphological data were used to delineate species boundaries in the velvet worm, Peripatopsis sedgwicki species complex. The combined mitochondrial cytochrome c oxidase subunit one (COI) and the nuclear 18S rRNA loci were phylogenetically analyzed using Bayesian inference and maximum likelihood platforms that both demonstrated the presence of four, statistically well-supported clades (A–D). In addition, five species delimitation methods (ASAP, bPTP, bGMYC, STACEY and iBPP) were used on the combined DNA sequence data to identify possible novel lineages. All five species delimitation methods supported the distinction of the Fort Fordyce Nature Reserve specimens in the Eastern Cape province, however, in the main P. sedgwicki s.l. species complex, the species delimitation methods revealed a variable number of novel operational taxonomic units. Gross morphological characters were of limited utility, with only the leg pair number in the Fort Fordyce Nature Reserve specimens and the white head-collar of the Van Stadens Wildflower Nature Reserve specimens being diagnostic. The RADseq results from the earlier study of P. sedgwicki s.l. provided highly congruent results with the four clades observed in the present study. The distribution of P. sedgwicki s.s. (clade B) is restricted to the western portions of its distribution in the Afrotemperate forested regions of the Western Cape Province, South Africa. Three novel species, P. collarium sp. nov., (clade C) P. margaritarius sp. nov., (clade A) and P. orientalis sp. nov., (clade D) are described, of which the first two species are narrow range endemics. The present study, along with several recent systematic studies of velvet worms affirms the importance of fine-scale sampling to detect and document the alpha taxonomic diversity of Onychophora.
本研究利用 DNA 序列和形态学数据来划分绒毛蠕虫 Peripatopsis sedgwicki 物种群的物种界限。利用贝叶斯推断法和最大似然法平台对线粒体细胞色素 c 氧化酶亚单位一（COI）和核 18S rRNA 基因座进行了系统发育分析，结果表明存在四个统计学上支持良好的支系（A-D）。此外，还使用五种物种划分方法（ASAP、bPTP、bGMYC、STACEY 和 iBPP）对合并的 DNA 序列数据进行分析，以确定可能存在的新支系。所有五种物种定界方法都支持区分东开普省福特斯自然保护区的标本，但在主要的 P. sedgwicki s.l. 物种群中，物种定界方法揭示了数量不等的新的可操作分类单元。大体形态特征的作用有限，只有福特斯堡自然保护区标本的腿对数和范斯塔登斯野花自然保护区标本的白色头领具有诊断价值。早先对 P. sedgwicki s.l.的 RADseq 研究结果与本研究中观察到的四个支系结果高度一致。P. sedgwicki s.s.（支系 B）的分布仅限于南非西开普省非洲温带森林地区的西部。本研究描述了三个新物种：P. collarium sp.nov.（支系 C）、P. margaritarius sp.nov.（支系 A）和 P. orientalis sp.nov.（支系 D），其中前两个物种是狭窄分布区的特有物种。本研究以及最近对天鹅绒蠕虫进行的几项系统研究肯定了精细取样对检测和记录天鹅绒蠕虫阿尔法分类多样性的重要性。
{"title":"Molecular and Morphological Evidence for the Description of Three Novel Velvet Worm Species (Onychophora: Peripatopsidae: Peripatopsis sedgwicki s.s.) from South Africa","authors":"Aaron Barnes, Savel R. Daniels","doi":"10.3390/d16090566","DOIUrl":"https://doi.org/10.3390/d16090566","url":null,"abstract":"During the present study, DNA sequence and morphological data were used to delineate species boundaries in the velvet worm, Peripatopsis sedgwicki species complex. The combined mitochondrial cytochrome c oxidase subunit one (COI) and the nuclear 18S rRNA loci were phylogenetically analyzed using Bayesian inference and maximum likelihood platforms that both demonstrated the presence of four, statistically well-supported clades (A–D). In addition, five species delimitation methods (ASAP, bPTP, bGMYC, STACEY and iBPP) were used on the combined DNA sequence data to identify possible novel lineages. All five species delimitation methods supported the distinction of the Fort Fordyce Nature Reserve specimens in the Eastern Cape province, however, in the main P. sedgwicki s.l. species complex, the species delimitation methods revealed a variable number of novel operational taxonomic units. Gross morphological characters were of limited utility, with only the leg pair number in the Fort Fordyce Nature Reserve specimens and the white head-collar of the Van Stadens Wildflower Nature Reserve specimens being diagnostic. The RADseq results from the earlier study of P. sedgwicki s.l. provided highly congruent results with the four clades observed in the present study. The distribution of P. sedgwicki s.s. (clade B) is restricted to the western portions of its distribution in the Afrotemperate forested regions of the Western Cape Province, South Africa. Three novel species, P. collarium sp. nov., (clade C) P. margaritarius sp. nov., (clade A) and P. orientalis sp. nov., (clade D) are described, of which the first two species are narrow range endemics. The present study, along with several recent systematic studies of velvet worms affirms the importance of fine-scale sampling to detect and document the alpha taxonomic diversity of Onychophora.","PeriodicalId":501149,"journal":{"name":"Diversity","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142198564","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Livestock farming has been a practice of great importance for the evolution of civilization, not only influencing social, economic, and cultural aspects at a global level, but also food, the economy, and sustainability, especially in developing countries, where it generates significant pressure on natural resources and biodiversity. In this context, conflict arises between wildlife, mainly top predators, and livestock farmers. Despite the efforts of different communities to implement measures against predation, the conflict continues to increase. In Latin America, the livestock sector is growing at a much higher rate than in the rest of the world, particularly in Chile, where around a third of agricultural production units use livestock as their main source of livelihood. To understand the factors influencing the behavior of goat farmers when adopting measures, we applied a hurdle model with social, spatial, economic, and productive information to assess the decision to adopt measures and the intensity of the adoption of such practices. To perform this, we used data from a survey, administered in 2014 to 476 farmers located in the three provinces of the Coquimbo Region. Our dependent variable was defined by six measures: a protection dog, night confinement of the herd, supervised grazing, anti-carnivore corral, the death or capture of the predator, and repelling the predator. The adoption decision, as well as the intensity of adoption, were influenced by the location, household size, the type of livestock, the income generated by the livestock, health management, and access to technical advice. The decision to adopt measures was influenced by the production system and whether it was self-sustaining, while the intensity of adoption was influenced by herd size and the number of losses due to predation. The results showed the importance of developing and adjusting livestock support initiatives in the study area, including those that could be created, based on differentiated measures according to the profiles of farmers in the territory.
{"title":"Factors Affecting the Adoption of Anti-Predation Measures by Livestock Farmers: The Case of Northern Chile","authors":"Camila Núñez, Lisandro Roco, Victor Moreira","doi":"10.3390/d16090567","DOIUrl":"https://doi.org/10.3390/d16090567","url":null,"abstract":"Livestock farming has been a practice of great importance for the evolution of civilization, not only influencing social, economic, and cultural aspects at a global level, but also food, the economy, and sustainability, especially in developing countries, where it generates significant pressure on natural resources and biodiversity. In this context, conflict arises between wildlife, mainly top predators, and livestock farmers. Despite the efforts of different communities to implement measures against predation, the conflict continues to increase. In Latin America, the livestock sector is growing at a much higher rate than in the rest of the world, particularly in Chile, where around a third of agricultural production units use livestock as their main source of livelihood. To understand the factors influencing the behavior of goat farmers when adopting measures, we applied a hurdle model with social, spatial, economic, and productive information to assess the decision to adopt measures and the intensity of the adoption of such practices. To perform this, we used data from a survey, administered in 2014 to 476 farmers located in the three provinces of the Coquimbo Region. Our dependent variable was defined by six measures: a protection dog, night confinement of the herd, supervised grazing, anti-carnivore corral, the death or capture of the predator, and repelling the predator. The adoption decision, as well as the intensity of adoption, were influenced by the location, household size, the type of livestock, the income generated by the livestock, health management, and access to technical advice. The decision to adopt measures was influenced by the production system and whether it was self-sustaining, while the intensity of adoption was influenced by herd size and the number of losses due to predation. The results showed the importance of developing and adjusting livestock support initiatives in the study area, including those that could be created, based on differentiated measures according to the profiles of farmers in the territory.","PeriodicalId":501149,"journal":{"name":"Diversity","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142198593","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Remya Kottarathu Kalarikkal, Hotaek Park, Christos Georgiadis, Benoit Guénard, Evan P. Economo, Youngwook Kim
Climate change is a major threat to the Middle East and North Africa (MENA) region, which can cause significant harm to its plant and animal species. We predicted the habitat distribution of Cataglyphis nodus (Brullé, 1833) in MENA using MaxEnt models under current and future climate conditions. Our analysis indicates that the cooler regions of the MENA are projected to experience temperature increases of 1–2 °C by 2040 and 2–4 °C by the 2070s. Similarly, the warmer regions may anticipate rises of 0.5–2 °C by 2040 and 2–4 °C by the 2070s. MaxEnt model results for the current climate show good agreement with observations (mean area under the curve value of 0.975 and mean true statistical skill value of 0.8), indicating good potential habitat suitability for C. nodus. Significant factors affecting habitat suitability are elevation, mean monthly precipitation of the coldest quarter, temperature seasonality, and precipitation amount of the driest month. The research predicts that under Shared Socioeconomic Pathway (SSP) 1.2.6, the habitat suitability area may increase by 6% in 2040, while SSP 3.7.0 (0.3%) and SSP 5.8.5 (2.6%) predict a decrease. For 2070, SSP 5.8.5 predicts a 2.2% reduction in habitat suitability, while SSP 1.2.6 (0.4%) and SSP 3.7.0 (1.3%) predict slight increases. The results provide insight into the potential impacts of climate change on the species and regional biodiversity changes associated with the projected species distribution.
{"title":"Current and Future Distribution of the Cataglyphis nodus (Brullé, 1833) in the Middle East and North Africa","authors":"Remya Kottarathu Kalarikkal, Hotaek Park, Christos Georgiadis, Benoit Guénard, Evan P. Economo, Youngwook Kim","doi":"10.3390/d16090563","DOIUrl":"https://doi.org/10.3390/d16090563","url":null,"abstract":"Climate change is a major threat to the Middle East and North Africa (MENA) region, which can cause significant harm to its plant and animal species. We predicted the habitat distribution of Cataglyphis nodus (Brullé, 1833) in MENA using MaxEnt models under current and future climate conditions. Our analysis indicates that the cooler regions of the MENA are projected to experience temperature increases of 1–2 °C by 2040 and 2–4 °C by the 2070s. Similarly, the warmer regions may anticipate rises of 0.5–2 °C by 2040 and 2–4 °C by the 2070s. MaxEnt model results for the current climate show good agreement with observations (mean area under the curve value of 0.975 and mean true statistical skill value of 0.8), indicating good potential habitat suitability for C. nodus. Significant factors affecting habitat suitability are elevation, mean monthly precipitation of the coldest quarter, temperature seasonality, and precipitation amount of the driest month. The research predicts that under Shared Socioeconomic Pathway (SSP) 1.2.6, the habitat suitability area may increase by 6% in 2040, while SSP 3.7.0 (0.3%) and SSP 5.8.5 (2.6%) predict a decrease. For 2070, SSP 5.8.5 predicts a 2.2% reduction in habitat suitability, while SSP 1.2.6 (0.4%) and SSP 3.7.0 (1.3%) predict slight increases. The results provide insight into the potential impacts of climate change on the species and regional biodiversity changes associated with the projected species distribution.","PeriodicalId":501149,"journal":{"name":"Diversity","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142198588","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Danny J. Gustafson, Logan A. Dix, Derek P. Webster, Benjamin K. Scott, Isabella E. Gustafson, Aidan D. Farrell, Daniel M. Koenemann
Coccoloba uvifera L. (seagrape) is a primarily dioecious neotropical tree species which often grows in the beach–forest transitional ecotone of coastal strand vegetation. We used five maternally inherited non-coding chloroplast regions to characterize the phytogeography of C. uvifera collected across the Caribbean Basin and Florida. Bayesian analysis revealed divergence between the Aruba–Trinidad–Tobago–Antigua–Jamaica island group and the continental Belize–Florida–US Virgin Islands (USVI) group at 1.78 million years before present (mybp), divergence between the Belize and Florida–USVI groups at 1.08 mybp, and a split of Antigua–Jamaica from Aruba–Trinidad–Tobago at 0.217 mybp. Haplotype network analysis supports the three clades, with the island group possessing the oldest haplotype. Based on geology and proximity, these clades correspond to South American (oldest), Central American, and North American (most recent). Coccoloba uvifera demographic expansion occurred during the Pleistocene epoch and peaked near the end of the last glacial maximum (ca. 0.026–0.019 mybp) when the global sea levels were 125 m lower than today. Our findings also reveal that tropical cyclones, which often impact coastal strand vegetation, did not affect genetic diversity. However, there was a positive association between latitude and the average number of substitutions, further enriching our understanding of the species’ phytogeography.
{"title":"Phylogeography of Coccoloba uvifera (Polygonaceae) Sampled across the Caribbean Basin","authors":"Danny J. Gustafson, Logan A. Dix, Derek P. Webster, Benjamin K. Scott, Isabella E. Gustafson, Aidan D. Farrell, Daniel M. Koenemann","doi":"10.3390/d16090562","DOIUrl":"https://doi.org/10.3390/d16090562","url":null,"abstract":"Coccoloba uvifera L. (seagrape) is a primarily dioecious neotropical tree species which often grows in the beach–forest transitional ecotone of coastal strand vegetation. We used five maternally inherited non-coding chloroplast regions to characterize the phytogeography of C. uvifera collected across the Caribbean Basin and Florida. Bayesian analysis revealed divergence between the Aruba–Trinidad–Tobago–Antigua–Jamaica island group and the continental Belize–Florida–US Virgin Islands (USVI) group at 1.78 million years before present (mybp), divergence between the Belize and Florida–USVI groups at 1.08 mybp, and a split of Antigua–Jamaica from Aruba–Trinidad–Tobago at 0.217 mybp. Haplotype network analysis supports the three clades, with the island group possessing the oldest haplotype. Based on geology and proximity, these clades correspond to South American (oldest), Central American, and North American (most recent). Coccoloba uvifera demographic expansion occurred during the Pleistocene epoch and peaked near the end of the last glacial maximum (ca. 0.026–0.019 mybp) when the global sea levels were 125 m lower than today. Our findings also reveal that tropical cyclones, which often impact coastal strand vegetation, did not affect genetic diversity. However, there was a positive association between latitude and the average number of substitutions, further enriching our understanding of the species’ phytogeography.","PeriodicalId":501149,"journal":{"name":"Diversity","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142198592","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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