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Reduced response to SARS-CoV-2 vaccination is associated with impaired immunoglobulin class switch recombination in SLE patients 系统性红斑狼疮患者对 SARS-CoV-2 疫苗接种的反应减弱与免疫球蛋白类别转换重组受损有关
Pub Date : 2024-08-20 DOI: 10.1101/2024.08.14.24310924
Guillem Montamat, Claire E. Meehan, Hannah F. Bradford, Resit Yildirim, Francisca Guimaraes, Marina Johnson, David Goldblatt, David A. Isenberg, Claudia Mauri
Background: Systemic Lupus Erythematosus (SLE) patients exhibit B-cell abnormalities. Although there are concerns about reduced antibody responses to SARS-CoV-2 vaccines, detailed data on B-cell-specific responses in SLE remain scarce. Understanding the responsiveness to novel vaccine-antigens, and boosters number, is important to avoid unnecessary prolonged isolation of immunocompromised individuals.Objectives: To assess humoral and antigen-specific B-cell subset responses, including changes in isotype switching, prior to and after several doses of SARS-CoV-2 vaccines.Methods: Blood samples were obtained prior to and after SARS-CoV-2 vaccination from cross-sectional and longitudinal cohorts of previously uninfected patients with SLE. Healthy participants receiving SARS-CoV-2 vaccines were recruited as controls. We measured serum antibody titres, their neutralizing capacity, and vaccine-specific memory B cells subsets.Results: Impaired IgG, IgA, and neutralizing responses against the original and various SARS-CoV-2 variants were observed following two doses of vaccine in SLE patients. Follow-up booster doses increased humoral responses compared to baseline, but they remained lower, with poorer neutralisation capacity against most strains, compared to healthy individuals after three or more doses. Analysis of memory B-cells subsets in SLE patients revealed an increase of SARS-CoV-2-specific isotype unswitched IgM+ over SARS-CoV-2-specific isotype switched IgG+/IgA+memory B-cells compared to healthy individuals. Culturing healthy naive B-cells with high levels of IFNα, a hallmark of SLE pathogenesis, prevented B-cells from switching to IgG under IgG-polarizing conditions.Conclusions: SLE patients' protection against SARS-CoV-2 is overall impaired compared to healthy individuals and is associated with a class switch defect possibly due to chronic exposure of B-cells to IFNα.
背景:系统性红斑狼疮(SLE)患者表现出 B 细胞异常。尽管人们担心对 SARS-CoV-2 疫苗的抗体反应会降低,但有关系统性红斑狼疮 B 细胞特异性反应的详细数据仍然很少。了解患者对新型疫苗抗原的反应和增强剂的数量,对于避免不必要地长期隔离免疫功能低下的患者非常重要:评估接种几剂 SARS-CoV-2 疫苗前后体液和抗原特异性 B 细胞亚群的反应,包括同种型转换的变化:方法: 从既往未感染过 SARS 的系统性红斑狼疮患者的横向和纵向队列中采集 SARS-CoV-2 疫苗接种前后的血液样本。同时招募接种过 SARS-CoV-2 疫苗的健康人作为对照。我们测量了血清抗体滴度、抗体中和能力以及疫苗特异性记忆 B 细胞亚群:结果:在系统性红斑狼疮患者接种两剂疫苗后,观察到针对原始 SARS-CoV-2 和各种 SARS-CoV-2 变体的 IgG、IgA 和中和反应受损。与基线相比,后续加强剂量增加了体液反应,但与接种三剂或更多剂量的健康人相比,体液反应仍然较低,对大多数毒株的中和能力也较差。对系统性红斑狼疮患者记忆B细胞亚群的分析表明,与健康人相比,SARS-CoV-2特异性同型未转换IgM+比SARS-CoV-2特异性同型转换IgG+/IgA+记忆B细胞增多。用高水平的IFNα(系统性红斑狼疮发病机制的标志)培养健康的天真B细胞,可防止B细胞在IgG极化条件下转换为IgG:结论:与健康人相比,系统性红斑狼疮患者对SARS-CoV-2的保护能力总体上受损,这可能与B细胞长期暴露于IFNα导致的类别转换缺陷有关。
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引用次数: 0
Association between sleep-disordered breathing and moderate to severe depression in systemic lupus erythematosus: the TRUMP2-SLE study 系统性红斑狼疮患者睡眠呼吸障碍与中度至重度抑郁之间的关系:TRUMP2-SLE 研究
Pub Date : 2024-08-20 DOI: 10.1101/2024.08.20.24312299
Yuichi Ishikawa, Nao Oguro, Takanori Ichikawa, Dai Kishida, Natsuki Sakurai, Chiharu Hidekawa, Kenta Shidahara, Keigo Hayashi, Yoshia Miyawaki, Yasuhiro Shimojima, Ryusuke Yoshimi, Ken-ei Sada, Nobuyuki Yajima, Noriaki Kurita
Objective: Depression is the most frequent mood disorder that impairs quality of life and medication adherence in patients with systemic lupus erythematosus (SLE). Although sleep-disordered breathing (SDB) is a contributor to depression in the general population, its prevalence in SLE patients and its impact on depression are not clear. We employed a clinical epidemiologic approach to examine them in a multicenter cohort of SLE patients.Methods: This was a cross-sectional study of 414 Japanese adults with SLE at five university hospitals. The main exposure was high-risk SDB, assessed with the Berlin Questionnaire. The main outcome was moderate to severe depression assessed using the Patient Health Questionnaire-9. Poisson regression models were fitted with a robust error variance to estimate adjusted prevalence ratios (aPRs).Results: The mean age was 47.5 years and the mean body mass index (BMI) was 22.1 kg/m2. The prevalence of high-risk SDB was 15.2% (95% confidence interval [95% CI] 11.9%-19.0%). The prevalence of moderate or severe depression was 19.1% (95% CI 15.4%-23.2%). High-risk SDB was associated with a greater likelihood of moderate to severe depression (aPR 2.62, 95% CI 1.62-4.24). All the 1-, 2-, and 3-positive risk categories for SDB were associated with moderate to severe depression, in a dose-dependent manner. Conclusion: Among patients with SLE, SDB is common, and high-risk SDB is strongly associated with moderate to severe depression. The signs and symptoms of SDB should prompt a simultaneous evaluation for concomitant depression.
目的:抑郁症是系统性红斑狼疮(SLE)患者最常见的情绪障碍,会影响患者的生活质量和服药依从性。虽然睡眠呼吸障碍(SDB)是导致普通人群抑郁的一个因素,但其在系统性红斑狼疮患者中的发病率及其对抑郁的影响尚不清楚。我们采用临床流行病学的方法,对系统性红斑狼疮患者的多中心队列进行了研究:这是一项横断面研究,对象是在五所大学医院就诊的 414 名日本成人系统性红斑狼疮患者。主要暴露因素是高危 SDB,通过柏林问卷进行评估。主要结果是中度至重度抑郁,使用患者健康问卷-9进行评估。采用稳健误差方差拟合泊松回归模型,以估算调整后患病率(aPRs):平均年龄为 47.5 岁,平均体重指数(BMI)为 22.1 kg/m2。高危 SDB 患病率为 15.2%(95% 置信区间 [95% CI] 11.9%-19.0%)。中度或重度抑郁症患病率为 19.1%(95% 置信区间为 15.4%-23.2%)。高风险 SDB 与中度至重度抑郁的可能性增加有关(aPR 2.62,95% CI 1.62-4.24)。所有 1、2 和 3 阳性 SDB 风险类别均与中度至重度抑郁相关,且呈剂量依赖性。结论在系统性红斑狼疮患者中,SDB很常见,高危SDB与中度至重度抑郁密切相关。出现 SDB 的体征和症状时,应同时评估是否伴有抑郁症。
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引用次数: 0
Trust in Health Information Sources Among Patients with Systemic Lupus Erythematosus in the Social Networking Era: The TRUMP2-SLE Multicentre Study 社交网络时代系统性红斑狼疮患者对健康信息来源的信任:TRUMP2-SLE多中心研究
Pub Date : 2024-08-19 DOI: 10.1101/2024.08.17.24312148
Takanori Ichikawa, Dai Kishida, Yasuhiro Shimojima, Nobuyuki Yajima, Nao Oguro, Ryusuke Yoshimi, Natsuki Sakurai, Chiharu Hidekawa, Ken-ei Sada, Yoshia Miyawaki, Keigo Hayashi, Kenta Shidahara, Yuichi Ishikawa, Yoshiki Sekijima, Noriaki Kurita
ObjectivesThe rise of social networking services (SNS) has significantly impacted how patients with systemic lupus erythematosus (SLE) acquire health information, potentially influencing their discussions with healthcare providers. This study aimed to identify the preferences, actual access, and trust levels in various health information sources among SLE patients, along with associated factors. MethodsA cross-sectional study was conducted from June 2020 to August 2021 across five university medical centres in Japan, involving 510 SLE patients aged 20 years and older. The study measured access to and preferences for health information sources, including SNS, and assessed trust in these sources. Factors influencing, such as internet usage and health literacy (HL) (functional, communicative, and critical), were analyzed using Poisson regression with robust error variance. ResultsAmong the respondents, 98.2% expressed trust in doctors, whereas lower trust was observed in websites/blogs (52.0%) and SNS (26.9%). Despite this, the internet was the most frequent initial source of health information (45.3%), encompassing medical institutions' homepages, patient blogs, Twitter, and Instagram. Longer internet use was linked to increased trust in homepages/blogs and SNS. Higher functional HL correlated with greater trust in doctors and lower trust in websites/blogs and SNS, while higher communicative HL was associated with increased trust in doctors, homepages, and blogs. ConclusionMany SLE patients seek online health information, including SNS, before consulting rheumatologists. Internet usage duration and multidimensional HL influence trust in online health information sources. Rheumatologists and healthcare providers should account for these factors when disseminating health information and engaging with patients.
目的社交网络服务(SNS)的兴起极大地影响了系统性红斑狼疮(SLE)患者获取健康信息的方式,并可能影响他们与医疗服务提供者的讨论。本研究旨在确定系统性红斑狼疮患者对各种健康信息来源的偏好、实际获取途径和信任程度以及相关因素。方法 一项横断面研究于 2020 年 6 月至 2021 年 8 月在日本的五所大学医疗中心进行,涉及 510 名 20 岁及以上的系统性红斑狼疮患者。该研究测量了包括 SNS 在内的健康信息来源的获取途径和偏好,并评估了对这些来源的信任度。使用带有稳健误差方差的泊松回归法分析了影响因素,如互联网使用情况和健康素养(HL)(功能性、交流性和关键性)。结果98.2%的受访者表示信任医生,而对网站/博客(52.0%)和 SNS(26.9%)的信任度较低。尽管如此,互联网仍是最常见的健康信息初始来源(45.3%),包括医疗机构主页、患者博客、推特和 Instagram。互联网使用时间越长,对主页/博客和 SNS 的信任度就越高。功能性HL越高,对医生的信任度就越高,对网站/博客和SNS的信任度就越低,而交流性HL越高,对医生、主页和博客的信任度就越高。结论许多系统性红斑狼疮患者在向风湿免疫科医生咨询之前都会寻求包括社交网络服务在内的在线健康信息。使用互联网的时间长短和多维 HL 会影响对在线健康信息来源的信任度。风湿免疫科医生和医疗服务提供者在传播健康信息和与患者接触时应考虑到这些因素。
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引用次数: 0
Autoantibodies towards HFE and SYT5 in anti-neutrophil cytoplasm antibody-associated vasculitis relapse 抗中性粒细胞胞浆抗体相关性血管炎复发中的HFE和SYT5自身抗体
Pub Date : 2024-07-27 DOI: 10.1101/2024.07.25.24310702
Shaghayegh Bayati, Jamsheela Nazer, James Ng, Michael Hayes, Mark A Little, Peter Nilsson, Elisa Pin
Objective: Identification of those at high and low risk of disease relapse is a major unmet need in the management of patients with ANCA-associated vasculitis (AAV). Precise stratification would allow tailoring of immunosuppressive medication. We profiled the autoantibody repertoire of AAV patients in remission to identify novel autoantibodies associated with relapse risk. Methods: Plasma samples collected from AAV patients in remission were screened for novel autoantibodies using in-house generated protein arrays including 42,000 protein fragments representing 18,000 unique human proteins. Patients were categorized based on the occurrence and frequency of relapses. We modelled the association between these antibodies and relapse occurrence using descriptive and high dimensional regression approaches. Results: We observed nine autoantibodies at higher frequency in samples from AAV patients experiencing multiple relapses compared to patients in long-term remission off therapy (LTROT). LASSO analysis identified six autoantibodies that exhibited an association with relapse occurrence after sample collection. Antibodies targeting HFE and SYT5 were identified as associated with relapse in both analyses. Conclusion: Through a broad protein array-based autoantibody screening, we identified two novel autoantibodies as candidate biomarkers of relapse in AAV.
目的:在 ANCA 相关性血管炎(AAV)患者的治疗过程中,识别疾病复发的高危人群和低危人群是一项尚未满足的重大需求。精确的分层将有助于定制免疫抑制药物。我们对缓解期AAV患者的自身抗体库进行了分析,以确定与复发风险相关的新型自身抗体。研究方法利用内部生成的蛋白质阵列(包括代表 18,000 种独特人类蛋白质的 42,000 个蛋白质片段)对从缓解期 AAV 患者处采集的血浆样本进行新型自身抗体筛查。根据复发的发生率和频率对患者进行分类。我们使用描述性和高维回归方法模拟了这些抗体与复发发生率之间的关联。结果显示与长期缓解治疗(LTROT)患者相比,我们在多次复发的 AAV 患者样本中观察到九种频率较高的自身抗体。LASSO分析确定了六种自身抗体与样本采集后的复发率有关。在这两项分析中,均发现针对 HFE 和 SYT5 的抗体与复发有关。结论:通过基于广泛蛋白质阵列的自身抗体筛选,我们发现了两种新型自身抗体作为AAV复发的候选生物标志物。
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引用次数: 0
Prospective Registration of Trials: Where we are, why, and how we could get better 试验的前瞻性注册:我们的现状、原因以及如何改进
Pub Date : 2024-07-24 DOI: 10.1101/2024.07.24.24310935
Denis Mongin, Diana Buitrago-Garcia, Sami Capderou, Thomas Agoritsas, Delphine Shophie Courvoisier, Michele Iudici
Objectives: Transparent trial conduct requires prospective registration of a randomized controlled trial before the enrolment of the first participant. Registration aims to minimize potential biases through unjustified or hidden modification of trial design. We aimed to (1) estimate the proportion of randomized controlled trials that are prospectively registered and determine the time trends and the factors associated with prospective registration; (2) evaluate the reasons for non-adherence with prospective registration and explore potential mechanisms to enhance adherence with prospective registration. We studied trials published in rheumatology as a case study.Design and setting: We searched for reports of trials in rheumatology published between January 2009 and December 2022 using MEDLINE-PubMed. We retrieved trial registration numbers using metadata and reviewed full texts. We conducted a multivariable logistic regression to identify factors associated with prospective trial registration. We sent an online survey to authors of trials that were not prospectively registered. We inquired about possible reasons for non-adherence with prospective registration and asked about potential solutions. Results: We identified 1093 primary reports of randomized controlled trials; 453 (41.4%) were not prospectively registered. Of these, 130 (11.9%) were not registered, and 323 (29.5%) were retrospectively registered. Prospective registration increased over time at a rate of 3% per year (p<0.001), with only 13.3% (2/15) trials prospectively registered in 2009 to 73.2% (112/153) trials in 2022. Even among journals publicly supporting ICMJE recommendation, 16% of the trials published in 2022 were not prospectively registered. In the multivariable model, prospective registration was associated with a larger sample size, recruitment conducted across countries, and publication in a journal with a higher impact factor. Trial evaluating non pharmaceutical intervention, especially education, delivery of health care or wellness, had a lower rate of prospective registration. Investigators reported lack of knowledge, or organizational problems as the main reasons for retrospective registration. Authors also suggested linking ethical approval to trial registration as the best option to ensure prospective registration. Conclusions: Despite significant improvement, adherence to prospective registration remains unsatisfactory in rheumatology. Different strategies targeting journal editors, healthcare professionals, and researchers may improve trial registration.
目标:透明的试验行为要求随机对照试验在招收第一名参与者之前进行前瞻性注册。登记的目的是尽量减少因对试验设计进行不合理或隐蔽的修改而可能造成的偏差。我们的目标是:(1)估算前瞻性登记的随机对照试验的比例,并确定与前瞻性登记相关的时间趋势和因素;(2)评估未坚持前瞻性登记的原因,并探索加强坚持前瞻性登记的潜在机制。我们将风湿病学上发表的试验作为案例进行研究:我们使用MEDLINE-PubMed检索了2009年1月至2022年12月期间发表的风湿病学试验报告。我们使用元数据检索了试验注册号,并查阅了全文。我们进行了多变量逻辑回归,以确定与前瞻性试验注册相关的因素。我们向未进行前瞻性注册的试验的作者发送了一份在线调查。我们询问了未进行前瞻性注册的可能原因,并询问了潜在的解决方案。结果我们确定了 1093 项随机对照试验的主要报告,其中 453 项(41.4%)未进行前瞻性注册。其中,130 项(11.9%)未登记,323 项(29.5%)进行了回顾性登记。随着时间的推移,前瞻性注册以每年3%的速度增加(p<0.001),2009年只有13.3%(2/15)的试验进行了前瞻性注册,到2022年则达到73.2%(112/153)。即使在公开支持ICMJE建议的期刊中,2022年发表的试验中也有16%未进行前瞻性注册。在多变量模型中,前瞻性注册与样本量较大、跨国招募以及发表在影响因子较高的期刊上有关。评估非药物干预(尤其是教育、医疗保健或健康)的试验的前瞻性注册率较低。研究者称,缺乏知识或组织问题是导致回顾性注册的主要原因。作者还建议,将伦理审批与试验登记挂钩是确保前瞻性登记的最佳选择。结论:尽管风湿病学在前瞻性注册方面取得了重大进展,但其遵守情况仍不能令人满意。针对期刊编辑、医护人员和研究人员的不同策略可能会改善试验注册。
{"title":"Prospective Registration of Trials: Where we are, why, and how we could get better","authors":"Denis Mongin, Diana Buitrago-Garcia, Sami Capderou, Thomas Agoritsas, Delphine Shophie Courvoisier, Michele Iudici","doi":"10.1101/2024.07.24.24310935","DOIUrl":"https://doi.org/10.1101/2024.07.24.24310935","url":null,"abstract":"Objectives: Transparent trial conduct requires prospective registration of a randomized controlled trial before the enrolment of the first participant. Registration aims to minimize potential biases through unjustified or hidden modification of trial design. We aimed to (1) estimate the proportion of randomized controlled trials that are prospectively registered and determine the time trends and the factors associated with prospective registration; (2) evaluate the reasons for non-adherence with prospective registration and explore potential mechanisms to enhance adherence with prospective registration. We studied trials published in rheumatology as a case study.\u0000Design and setting: We searched for reports of trials in rheumatology published between January 2009 and December 2022 using MEDLINE-PubMed. We retrieved trial registration numbers using metadata and reviewed full texts. We conducted a multivariable logistic regression to identify factors associated with prospective trial registration. We sent an online survey to authors of trials that were not prospectively registered. We inquired about possible reasons for non-adherence with prospective registration and asked about potential solutions. Results: We identified 1093 primary reports of randomized controlled trials; 453 (41.4%) were not prospectively registered. Of these, 130 (11.9%) were not registered, and 323 (29.5%) were retrospectively registered. Prospective registration increased over time at a rate of 3% per year (p&lt;0.001), with only 13.3% (2/15) trials prospectively registered in 2009 to 73.2% (112/153) trials in 2022. Even among journals publicly supporting ICMJE recommendation, 16% of the trials published in 2022 were not prospectively registered. In the multivariable model, prospective registration was associated with a larger sample size, recruitment conducted across countries, and publication in a journal with a higher impact factor. Trial evaluating non pharmaceutical intervention, especially education, delivery of health care or wellness, had a lower rate of prospective registration. Investigators reported lack of knowledge, or organizational problems as the main reasons for retrospective registration. Authors also suggested linking ethical approval to trial registration as the best option to ensure prospective registration. Conclusions: Despite significant improvement, adherence to prospective registration remains unsatisfactory in rheumatology. Different strategies targeting journal editors, healthcare professionals, and researchers may improve trial registration.","PeriodicalId":501212,"journal":{"name":"medRxiv - Rheumatology","volume":"130 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141776059","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Cross-Phenotype GWAS Supports Shared Genetic Susceptibility to Systemic Sclerosis and Primary Biliary Cholangitis 交叉表型 GWAS 证实系统性硬化症和原发性胆汁性胆管炎具有共同的遗传易感性
Pub Date : 2024-07-03 DOI: 10.1101/2024.07.01.24309721
Yiming Luo, Atlas Khan, Lili Liu, Cue Hyunkyu Lee, Gabriel J. Perreault, Sydney F. Pomenti, Pravitt Gourh, Krzysztof Kiryluk, Elana J. Bernstein
ObjectiveAn increased risk of primary biliary cholangitis (PBC) has been reported in patients with systemic sclerosis (SSc). Our study aims to investigate the shared genetic susceptibility between the two disorders and to define candidate causal genes using cross-phenotype GWAS meta-analysis. MethodsWe performed cross-phenotype GWAS meta-analysis and colocalization analysis for SSc and PBC. We performed both genome-wide and locus-based analysis, including tissue and pathway enrichment analyses, fine-mapping, colocalization analyses with expression quantitative trait loci (eQTL) and protein quantitative trait loci (pQTL) datasets, and phenome-wide association studies (PheWAS). Finally, we used an integrative approach to prioritize candidate causal genes from the novel loci. ResultsWe detected a strong genetic correlation between SSc and PBC (rg = 0.84, p = 1.7 x 10-6). In the cross-phenotype GWAS meta-analysis, we identified 44 non-HLA loci that reached genome-wide significance (p < 5 x 10-8). Evidence of shared causal variants between SSc and PBC was found for nine loci, five of which were novel. Integrating multiple sources of evidence, we prioritized CD40, ERAP1, PLD4, SPPL3, and CCDC113 as novel candidate causal genes. The CD40 risk locus colocalized with trans-pQTLs of multiple plasma proteins involved in B cell function. ConclusionOur study supports a strong shared genetic susceptibility between SSc and PBC. Through cross-phenotype analyses, we have prioritized several novel candidate causal genes and pathways for these disorders.
目的 据报道,系统性硬化症(SSc)患者患原发性胆汁性胆管炎(PBC)的风险增加。我们的研究旨在调查这两种疾病之间的共同遗传易感性,并通过跨表型 GWAS meta 分析确定候选致病基因。方法我们对 SSc 和 PBC 进行了跨表型 GWAS meta 分析和共定位分析。我们进行了全基因组分析和基于位点的分析,包括组织和通路富集分析、精细图谱分析、与表达定量性状位点(eQTL)和蛋白质定量性状位点(pQTL)数据集的共定位分析以及全表型关联研究(PheWAS)。最后,我们采用综合方法从新的基因座中筛选出候选因果基因。结果我们发现 SSc 和 PBC 之间存在很强的遗传相关性(rg = 0.84,p = 1.7 x 10-6)。在跨表型 GWAS 的荟萃分析中,我们确定了 44 个非 HLA 基因位点达到了全基因组显著性(p < 5 x 10-8)。在 9 个基因位点上发现了 SSc 和 PBC 之间共享因果变异的证据,其中 5 个是新发现的。综合多种证据来源,我们优先选择了 CD40、ERAP1、PLD4、SPPL3 和 CCDC113 作为新的候选致病基因。CD40 风险位点与涉及 B 细胞功能的多种血浆蛋白的反式-pQTLs 共同定位。结论我们的研究支持 SSc 和 PBC 之间存在很强的共同遗传易感性。通过交叉表型分析,我们优先确定了这两种疾病的几个新的候选致病基因和通路。
{"title":"Cross-Phenotype GWAS Supports Shared Genetic Susceptibility to Systemic Sclerosis and Primary Biliary Cholangitis","authors":"Yiming Luo, Atlas Khan, Lili Liu, Cue Hyunkyu Lee, Gabriel J. Perreault, Sydney F. Pomenti, Pravitt Gourh, Krzysztof Kiryluk, Elana J. Bernstein","doi":"10.1101/2024.07.01.24309721","DOIUrl":"https://doi.org/10.1101/2024.07.01.24309721","url":null,"abstract":"Objective\u0000An increased risk of primary biliary cholangitis (PBC) has been reported in patients with systemic sclerosis (SSc). Our study aims to investigate the shared genetic susceptibility between the two disorders and to define candidate causal genes using cross-phenotype GWAS meta-analysis. Methods\u0000We performed cross-phenotype GWAS meta-analysis and colocalization analysis for SSc and PBC. We performed both genome-wide and locus-based analysis, including tissue and pathway enrichment analyses, fine-mapping, colocalization analyses with expression quantitative trait loci (eQTL) and protein quantitative trait loci (pQTL) datasets, and phenome-wide association studies (PheWAS). Finally, we used an integrative approach to prioritize candidate causal genes from the novel loci. Results\u0000We detected a strong genetic correlation between SSc and PBC (rg = 0.84, p = 1.7 x 10-6). In the cross-phenotype GWAS meta-analysis, we identified 44 non-HLA loci that reached genome-wide significance (p &lt; 5 x 10-8). Evidence of shared causal variants between SSc and PBC was found for nine loci, five of which were novel. Integrating multiple sources of evidence, we prioritized CD40, ERAP1, PLD4, SPPL3, and CCDC113 as novel candidate causal genes. The CD40 risk locus colocalized with trans-pQTLs of multiple plasma proteins involved in B cell function. Conclusion\u0000Our study supports a strong shared genetic susceptibility between SSc and PBC. Through cross-phenotype analyses, we have prioritized several novel candidate causal genes and pathways for these disorders.","PeriodicalId":501212,"journal":{"name":"medRxiv - Rheumatology","volume":"9 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141549390","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The BRoccoli In Osteoarthritis (BRIO study) - A randomised controlled feasibility trial to examine the potential protective effect of broccoli bioactives, (specifically sulforaphane), on osteoarthritis. 西兰花骨关节炎研究(BRIO)--一项随机对照可行性试验,旨在研究西兰花生物活性物质(特别是莱菔硫烷)对骨关节炎的潜在保护作用。
Pub Date : 2024-06-21 DOI: 10.1101/2024.06.20.24309233
Rose K Davidson, Laura Watts, Gemma Beasy, shikha Saha, Paul Kroon, Aedin Cassidy, Allan Clark, William Fraser, Iain Mcnamara, Sarah R Kingsbury, Philip G Conaghan, Ian M Clark, Alex J MacGregor
ObjectiveThe Broccoli in Osteoarthritis (BRIO Study) was conducted to determine whether dietary sulforaphane (SFN), consumed as broccoli, improves pain and/or physical function in participants with knee osteoarthritis (OA). This was a proof of principle study to test the feasibility of the trial to optimise the design of an appropriately powered study.DesignTwo-centre, double-blind, two-arm parallel, randomised placebo-controlled, dietary intervention feasibility trial. Patients with radiographic knee osteoarthritis (Kellgren-Lawrence score 2-3), with pain of at least 4 on a scale of 0-10 were recruited. The intervention was a high glucoraphanin broccoli, (source of SFN), or a matched placebo (no SFN) soup. Pain and measures of physical function were measured at baseline, 6 and 12 weeks. ResultsThe mean WOMAC pain score (scale 0 - 20) was decreased by 4.2 (95% CI: 1.03,7.38) following intervention, Similar patterns of improvement were observed for other pain and function outcome measures. Study data, sample collections and intervention adherence were 100% compliant except where COVID restrictions applied. Acceptability for randomisation was 100% and acceptability for the intervention was 92%. There were three related adverse events, two of which were expected. ConclusionsHigh glucosinolate broccoli soup is a novel approach to managing OA that is widely accessible and can be used on a large scale. This study shows that it is an acceptable way of delivering dietary bioactives and has potential for therapeutic benefit. The primary outcome of pain improved in the intervention group compared to the placebo and the confidence interval encompassed the minimal clinically important difference. The data provide justification for proceeding to a large scale, appropriately powered intervention trial.
西兰花骨关节炎(BRIO)研究旨在确定以西兰花形式摄入的膳食中的莱菔硫烷(SFN)是否能改善膝关节骨关节炎(OA)患者的疼痛和/或身体功能。这是一项原则性证明研究,旨在测试试验的可行性,以优化设计适当的研究。试验招募了膝关节骨性关节炎(凯尔格伦-劳伦斯评分 2-3 分)患者,患者疼痛程度至少为 4 级(0-10 分)。干预措施是食用高葡萄糖苷含量的西兰花(SFN 的来源)或配对安慰剂(无 SFN)汤。在基线、6 周和 12 周时对疼痛和身体功能进行测量。结果干预后,WOMAC疼痛评分(0-20分)平均降低了4.2分(95% CI:1.03,7.38),其他疼痛和功能结果测量也出现了类似的改善模式。除 COVID 限制外,研究数据、样本采集和干预措施的遵守率均为 100%。随机化的可接受性为 100%,干预的可接受性为 92%。发生了三起相关不良事件,其中两起在意料之中。结论高葡萄糖苷酸西兰花汤是一种管理OA的新方法,可广泛获取并大规模使用。这项研究表明,这是一种可接受的提供膳食生物活性物质的方法,具有潜在的治疗效果。与安慰剂相比,干预组的主要疼痛结果有所改善,置信区间达到了最小临床重要性差异。这些数据为继续进行大规模、适当的干预试验提供了依据。
{"title":"The BRoccoli In Osteoarthritis (BRIO study) - A randomised controlled feasibility trial to examine the potential protective effect of broccoli bioactives, (specifically sulforaphane), on osteoarthritis.","authors":"Rose K Davidson, Laura Watts, Gemma Beasy, shikha Saha, Paul Kroon, Aedin Cassidy, Allan Clark, William Fraser, Iain Mcnamara, Sarah R Kingsbury, Philip G Conaghan, Ian M Clark, Alex J MacGregor","doi":"10.1101/2024.06.20.24309233","DOIUrl":"https://doi.org/10.1101/2024.06.20.24309233","url":null,"abstract":"Objective\u0000The Broccoli in Osteoarthritis (BRIO Study) was conducted to determine whether dietary sulforaphane (SFN), consumed as broccoli, improves pain and/or physical function in participants with knee osteoarthritis (OA). This was a proof of principle study to test the feasibility of the trial to optimise the design of an appropriately powered study.\u0000Design\u0000Two-centre, double-blind, two-arm parallel, randomised placebo-controlled, dietary intervention feasibility trial. Patients with radiographic knee osteoarthritis (Kellgren-Lawrence score 2-3), with pain of at least 4 on a scale of 0-10 were recruited. The intervention was a high glucoraphanin broccoli, (source of SFN), or a matched placebo (no SFN) soup. Pain and measures of physical function were measured at baseline, 6 and 12 weeks. Results\u0000The mean WOMAC pain score (scale 0 - 20) was decreased by 4.2 (95% CI: 1.03,7.38) following intervention, Similar patterns of improvement were observed for other pain and function outcome measures. Study data, sample collections and intervention adherence were 100% compliant except where COVID restrictions applied. Acceptability for randomisation was 100% and acceptability for the intervention was 92%. There were three related adverse events, two of which were expected. Conclusions\u0000High glucosinolate broccoli soup is a novel approach to managing OA that is widely accessible and can be used on a large scale. This study shows that it is an acceptable way of delivering dietary bioactives and has potential for therapeutic benefit. The primary outcome of pain improved in the intervention group compared to the placebo and the confidence interval encompassed the minimal clinically important difference. The data provide justification for proceeding to a large scale, appropriately powered intervention trial.","PeriodicalId":501212,"journal":{"name":"medRxiv - Rheumatology","volume":"95 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141510818","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Weight Gain Following a Diagnosis of Anti-neutrophil Cytoplasm Antibody-Associated Vasculitis 抗中性粒细胞胞浆抗体相关性血管炎诊断后体重增加
Pub Date : 2024-05-31 DOI: 10.1101/2024.05.29.24308107
Tania Salehi, Thomas French, Tariq E Farrah, Neeraj Dhaun, Robert W Hunter
Objectives Patients with anti-neutrophil cytoplasm antibody (ANCA)-associated vasculitis (AAV) are at increased long-term risk of cardiometabolic diseases. The prevalence of obesity in AAV has not been well documented. We aimed to characterise change in body weight following a diagnosis of active AAV and to determine the risk factors for this.
目的 抗中性粒细胞胞浆抗体(ANCA)相关性血管炎(AAV)患者罹患心脏代谢疾病的长期风险增加。有关 AAV 患者肥胖发生率的记录尚不充分。我们的目的是描述活动性 AAV 诊断后体重变化的特征,并确定其风险因素。
{"title":"Weight Gain Following a Diagnosis of Anti-neutrophil Cytoplasm Antibody-Associated Vasculitis","authors":"Tania Salehi, Thomas French, Tariq E Farrah, Neeraj Dhaun, Robert W Hunter","doi":"10.1101/2024.05.29.24308107","DOIUrl":"https://doi.org/10.1101/2024.05.29.24308107","url":null,"abstract":"<strong>Objectives</strong> Patients with anti-neutrophil cytoplasm antibody (ANCA)-associated vasculitis (AAV) are at increased long-term risk of cardiometabolic diseases. The prevalence of obesity in AAV has not been well documented. We aimed to characterise change in body weight following a diagnosis of active AAV and to determine the risk factors for this.","PeriodicalId":501212,"journal":{"name":"medRxiv - Rheumatology","volume":"26 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141254127","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Occupation Recognition and Exploitation in Rheumatology Clinical Notes: Employing Deep Learning Models for Named Entity Recognition and Knowledge Discovery in Electronic Health Records 风湿病学临床笔记中的职业识别与利用:在电子健康记录中采用深度学习模型进行命名实体识别和知识发现
Pub Date : 2024-05-09 DOI: 10.1101/2024.05.08.24306389
Alfredo Madrid-García, Inés Pérez-Sancristóbal, Leticia-Leon, Lydia-Abásolo, Benjamín Fernández-Gutiérrez, Luis Rodríguez-Rodríguez
Occupation is considered a Social Determinant of Health (SDOH) and its effects have been studied at multiple levels. Although the inclusion of such data in the Electronic Health Record (EHR) is vital for the provision of clinical care, specially in rheumatology where work disability prevention is essential, occupation information is often either not routinely documented or captured in an unstructured manner within conventional EHR systems. Encouraged by recent advances in natural language processing and deep learning models, we propose the use of novel architectures (i.e., transformers) to detect occupation mentions in rheumatology clinical notes of a tertiary hospital, and to whom those occupations belongs. We also aimed to evaluate the clinical and demographic characteristics that influence the collection of this SDOH; and the association between occupation and patients’ diagnosis. Bivariate and multivariate logistic regression analysis were conducted for this purpose.
职业被认为是健康的社会决定因素(SDOH),其影响已在多个层面进行了研究。虽然将这些数据纳入电子病历(EHR)对于提供临床护理至关重要,特别是在风湿病学中,预防工作残疾至关重要,但在传统的电子病历系统中,职业信息往往不是没有常规记录,就是以非结构化的方式获取。受自然语言处理和深度学习模型最新进展的鼓舞,我们提出使用新型架构(即转换器)来检测一家三甲医院风湿病学临床笔记中的职业提及,以及这些职业的所属人群。我们还旨在评估影响这种 SDOH 收集的临床和人口特征;以及职业与患者诊断之间的关联。为此,我们进行了二元和多元逻辑回归分析。
{"title":"Occupation Recognition and Exploitation in Rheumatology Clinical Notes: Employing Deep Learning Models for Named Entity Recognition and Knowledge Discovery in Electronic Health Records","authors":"Alfredo Madrid-García, Inés Pérez-Sancristóbal, Leticia-Leon, Lydia-Abásolo, Benjamín Fernández-Gutiérrez, Luis Rodríguez-Rodríguez","doi":"10.1101/2024.05.08.24306389","DOIUrl":"https://doi.org/10.1101/2024.05.08.24306389","url":null,"abstract":"Occupation is considered a Social Determinant of Health (SDOH) and its effects have been studied at multiple levels. Although the inclusion of such data in the Electronic Health Record (EHR) is vital for the provision of clinical care, specially in rheumatology where work disability prevention is essential, occupation information is often either not routinely documented or captured in an unstructured manner within conventional EHR systems. Encouraged by recent advances in natural language processing and deep learning models, we propose the use of novel architectures (i.e., transformers) to detect occupation mentions in rheumatology clinical notes of a tertiary hospital, and to whom those occupations belongs. We also aimed to evaluate the clinical and demographic characteristics that influence the collection of this SDOH; and the association between occupation and patients’ diagnosis. Bivariate and multivariate logistic regression analysis were conducted for this purpose.","PeriodicalId":501212,"journal":{"name":"medRxiv - Rheumatology","volume":"129 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140930626","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Safety, Pharmacokinetics, Biomarker Response, and Efficacy of E6742, a Dual Antagonist of Toll-Like Receptors 7 and 8, in a First-in-Patient, Randomized, Double-Blind, Phase 1/2 Study in Systemic Lupus Erythematosus 在一项针对系统性红斑狼疮的首例患者、随机、双盲、1/2 期研究中,Toll-Like 受体 7 和 8 双拮抗剂 E6742 的安全性、药代动力学、生物标志物反应和疗效
Pub Date : 2024-04-27 DOI: 10.1101/2024.04.26.24306410
Yoshiya Tanaka, Atsushi Kumanogoh, Tatsuya Atsumi, Tomonori Ishii, Fumitoshi Tago, Mari Aoki, Shintaro Yamamuro, Shizuo Akira
Objectives To evaluate the safety, tolerability, pharmacokinetics (PK), biomarker response, and efficacy of E6742 in a phase 1/2 study in patients with systemic lupus erythematosus (SLE).
目的 在一项针对系统性红斑狼疮 (SLE) 患者的 1/2 期研究中,评估 E6742 的安全性、耐受性、药代动力学 (PK)、生物标志物反应和疗效。
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medRxiv - Rheumatology
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