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Single Atom Convolutional Matching Pursuit: Theoretical Framework and Application to Lamb Waves based Structural Health Monitoring 单原子卷积匹配追求:基于λ波的结构健康监测的理论框架与应用
Pub Date : 2024-08-16 DOI: arxiv-2408.08929
Sebastian Rodriguez, Marc Rébillat, Shweta Paunikar, Pierre Margerit, Eric Monteiro, Francisco Chinesta, Nazih Mechbal
Structural Health Monitoring (SHM) aims to monitor in real time the healthstate of engineering structures. For thin structures, Lamb Waves (LW) are veryefficient for SHM purposes. A bonded piezoelectric transducer (PZT) emits LW inthe structure in the form of a short tone burst. This initial wave packet (IWP)propagates in the structure and interacts with its boundaries anddiscontinuities and with eventual damages generating additional wave packets.The main issues with LW based SHM are that at least two LW modes aresimultaneously excited and that those modes are dispersive. Matching PursuitMethod (MPM), which consists of approximating a signal as a sum of differentdelayed and scaled atoms taken from an a priori known learning dictionary,seems very appealing in such a context, however is limited to nondispersivesignals and relies on a priori known dictionary. An improved version of MPMcalled the Single Atom Convolutional Matching Pursuit method (SACMPM), whichaddresses the dispersion phenomena by decomposing a measured signal as delayedand dispersed atoms and limits the learning dictionary to only one atom, isproposed here. Its performances are illustrated when dealing with numerical andexperimental signals as well as its usage for damage detection. Although thesignal approximation method proposed in this paper finds an originalapplication in the context of SHM, this method remains completely general andcan be easily applied to any signal processing problem.
结构健康监测(SHM)旨在实时监测工程结构的健康状态。对于薄型结构而言,λ波(LW)非常适用于 SHM。粘结压电传感器(PZT)会以短音脉冲的形式在结构内部发射 LW。这种初始波包(IWP)在结构上传播,并与结构的边界、不连续面以及最终的损伤相互作用,产生额外的波包。基于 LW 的 SHM 的主要问题是至少有两个 LW 模式同时被激发,而且这些模式是色散的。匹配追寻法(MPM)将信号近似为不同延迟和缩放原子的总和,这些原子取自先验已知的学习字典。本文提出了 MPM 的改进版本,即单原子卷积匹配追求法(SACMPM),它通过将测量信号分解为延迟和分散原子来解决分散现象,并将学习字典限制为只有一个原子。在处理数值信号和实验信号以及用于损伤检测时,对其性能进行了说明。虽然本文提出的信号逼近方法最初应用于 SHM,但该方法仍具有完全的通用性,可轻松应用于任何信号处理问题。
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引用次数: 0
Assessing and Enhancing Large Language Models in Rare Disease Question-answering 评估和增强罕见病问答中的大型语言模型
Pub Date : 2024-08-15 DOI: arxiv-2408.08422
Guanchu Wang, Junhao Ran, Ruixiang Tang, Chia-Yuan Chang, Chia-Yuan Chang, Yu-Neng Chuang, Zirui Liu, Vladimir Braverman, Zhandong Liu, Xia Hu
Despite the impressive capabilities of Large Language Models (LLMs) ingeneral medical domains, questions remain about their performance in diagnosingrare diseases. To answer this question, we aim to assess the diagnosticperformance of LLMs in rare diseases, and explore methods to enhance theireffectiveness in this area. In this work, we introduce a rare diseasequestion-answering (ReDis-QA) dataset to evaluate the performance of LLMs indiagnosing rare diseases. Specifically, we collected 1360 high-qualityquestion-answer pairs within the ReDis-QA dataset, covering 205 rare diseases.Additionally, we annotated meta-data for each question, facilitating theextraction of subsets specific to any given disease and its property. Based onthe ReDis-QA dataset, we benchmarked several open-source LLMs, revealing thatdiagnosing rare diseases remains a significant challenge for these models. To facilitate retrieval augmentation generation for rare disease diagnosis,we collect the first rare diseases corpus (ReCOP), sourced from the NationalOrganization for Rare Disorders (NORD) database. Specifically, we split thereport of each rare disease into multiple chunks, each representing a differentproperty of the disease, including their overview, symptoms, causes, effects,related disorders, diagnosis, and standard therapies. This structure ensuresthat the information within each chunk aligns consistently with a question.Experiment results demonstrate that ReCOP can effectively improve the accuracyof LLMs on the ReDis-QA dataset by an average of 8%. Moreover, it significantlyguides LLMs to generate trustworthy answers and explanations that can be tracedback to existing literature.
尽管大语言模型(LLMs)在一般医疗领域的能力令人印象深刻,但它们在罕见疾病诊断中的表现仍然存在问题。为了回答这个问题,我们旨在评估大型语言模型在罕见疾病中的诊断性能,并探索提高其在这一领域有效性的方法。在这项工作中,我们引入了一个罕见疾病问题解答(ReDis-QA)数据集,以评估 LLMs 诊断罕见疾病的性能。具体来说,我们在 ReDis-QA 数据集中收集了 1360 个高质量的问答对,涵盖 205 种罕见疾病。此外,我们还为每个问题标注了元数据,以便于提取特定疾病及其属性的子集。在 ReDis-QA 数据集的基础上,我们对几种开源 LLM 进行了基准测试,结果表明诊断罕见疾病仍然是这些模型面临的重大挑战。为了促进罕见病诊断的检索增强生成,我们收集了第一个罕见病语料库(ReCOP),该语料库来自美国国家罕见病组织(NORD)数据库。具体来说,我们将每种罕见病的报告分成多个区块,每个区块代表该疾病的不同属性,包括概述、症状、病因、影响、相关疾病、诊断和标准疗法。实验结果表明,ReCOP 可以有效提高 ReDis-QA 数据集上 LLM 的准确率,平均提高 8%。实验结果表明,ReCOP 可以有效地提高 LLM 在 ReDis-QA 数据集上的准确率,平均提高 8%。此外,它还能极大地指导 LLM 生成可信的答案和解释,这些答案和解释可以追溯到现有的文献。
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引用次数: 0
Crystalline Material Discovery in the Era of Artificial Intelligence 人工智能时代的晶体材料发现
Pub Date : 2024-08-15 DOI: arxiv-2408.08044
Zhenzhong Wang, Haowei Hua, Wanyu Lin, Ming Yang, Kay Chen Tan
Crystalline materials, with their symmetrical and periodic structures,possess a diverse array of properties and have been widely used in variousfields, e.g., sustainable development. To discover crystalline materials,traditional experimental and computational approaches are often time-consumingand expensive. In these years, thanks to the explosive amount of crystallinematerials data, great interest has been given to data-driven materialsdiscovery. Particularly, recent advancements have exploited the expressiverepresentation ability of deep learning to model the highly complex atomicsystems within crystalline materials, opening up new avenues for fast andaccurate materials discovery. These works typically focus on four types oftasks, including physicochemical property prediction, crystalline materialsynthesis, aiding characterization, and force field development; these tasksare essential for scientific research and development in crystalline materialsscience. Despite the remarkable progress, there is still a lack of systematicresearch to summarize their correlations, distinctions, and limitations. Tofill this gap, we systematically investigated the progress made in deeplearning-based material discovery in recent years. We first introduce severaldata representations of the crystalline materials. Based on therepresentations, we summarize various fundamental deep learning models andtheir tailored usages in material discovery tasks. We also point out theremaining challenges and propose several future directions. The main goal ofthis review is to offer comprehensive and valuable insights and foster progressin the intersection of artificial intelligence and material science.
晶体材料具有对称和周期性结构,具有多种多样的特性,已被广泛应用于可持续发展等各个领域。要发现晶体材料,传统的实验和计算方法往往耗时费钱。近年来,由于晶体材料数据量的爆炸性增长,人们对数据驱动的材料发现产生了极大兴趣。特别是,最近的研究进展利用深度学习的表达能力,对晶体材料中高度复杂的原子系统进行建模,为快速、准确地发现材料开辟了新途径。这些工作通常集中在四类任务上,包括物理化学性质预测、晶体材料合成、辅助表征和力场开发;这些任务对于晶体材料科学的科学研究和发展至关重要。尽管取得了令人瞩目的进展,但仍然缺乏系统的研究来总结它们之间的关联、区别和局限性。为了填补这一空白,我们系统地研究了近年来基于深度学习的材料发现所取得的进展。我们首先介绍了几种晶体材料的数据表示。在此基础上,我们总结了各种基本的深度学习模型及其在材料发现任务中的定制应用。我们还指出了仍然存在的挑战,并提出了几个未来发展方向。本综述的主要目的是提供全面而有价值的见解,促进人工智能与材料科学交叉领域的进步。
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引用次数: 0
Efficient low rank model order reduction of vibroacoustic problems under stochastic loads 随机载荷下振动声学问题的高效低阶模型阶次缩减
Pub Date : 2024-08-15 DOI: arxiv-2408.08402
Yannik Hüpel, Ulrich Römer, Matthias Bollhöfer, Sabine Langer
This contribution combines a low-rank matrix approximation through SingularValue Decomposition (SVD) with second-order Krylov subspace-based Model OrderReduction (MOR), in order to efficiently propagate input uncertainties througha given vibroacoustic model. The vibroacoustic model consists of a platecoupled to a fluid into which the plate radiates sound due to a turbulentboundary layer excitation. This excitation is subject to uncertainties due tothe stochastic nature of the turbulence and the computational cost ofsimulating the coupled problem with stochastic forcing is very high. Theproposed method approximates the output uncertainties in an efficient way, byreducing the evaluation cost of the model in terms of DOFs and samples by usingthe factors of the SVD low-rank approximation directly as input for the MORalgorithm. Here, the covariance matrix of the vector of unknowns canefficiently be approximated with only a fraction of the original number ofevaluations. Therefore, the approach is a promising step to further reducingthe computational effort of large-scale vibroacoustic evaluations.
本论文通过奇异值分解(SVD)将低秩矩阵近似与基于二阶克雷洛夫子空间的模型阶次还原(MOR)相结合,以便通过给定的振动声学模型有效传播输入不确定性。振动声学模型包括一个与流体耦合的平板,平板在湍流边界层激励下向流体辐射声音。由于湍流的随机性,这种激励具有不确定性,而模拟具有随机激励的耦合问题的计算成本非常高。所提出的方法通过直接使用 SVD 低阶近似的因子作为 MOR 算法的输入,降低了模型在 DOF 和样本方面的评估成本,从而以一种高效的方式近似了输出的不确定性。在这里,只需原来评估次数的一小部分,就能有效地逼近未知向量的协方差矩阵。因此,该方法有望进一步减少大规模振动声学评估的计算量。
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引用次数: 0
Multilayer Network of Cardiovascular Diseases and Depression via Multipartite Projection 通过多方投影研究心血管疾病和抑郁症的多层网络
Pub Date : 2024-08-14 DOI: arxiv-2408.07562
Jie Li, Cillian Hourican, Pashupati P. Mishra, Binisha H. Mishra, Mika Kähönen, Olli T. Raitakari, Reijo Laaksonen, Mika Ala-Korpela, Liisa Keltikangas-Järvinen, Markus Juonala, Terho Lehtimäki, Jos A. Bosch, Rick Quax
There is a significant comorbidity between cardiovascular diseases (CVD) anddepression that is highly predictive of poor clinical outcome. Yet, itsunderlying biological pathways remain challenging to decipher, presumably dueto its non-linear associations across multiple mechanisms. Mutual informationprovides a framework to analyze such intricacies. In this study, we proposed amultipartite projection method based on mutual information correlations toconstruct multilayer disease networks. We applied the method to across-sectional dataset from a wave of the Young Finns Study. This datasetassesses CVD and depression, along with related risk factors and two omics ofbiomarkers: metabolites and lipids. Instead of directly correlating CVD-relatedphenotypes and depressive symptoms, we extended the notion of bipartitenetworks to create a multipartite network that connects these phenotype andsymptom variables to intermediate biological variables. Projecting from theseintermediate variables results in a weighted multilayer network, where eachlink between CVD and depression variables is marked by its `layer' (i.e.,metabolome or lipidome). Using this projection method, we identified potentialmediating biomarkers that connect CVD to depression. These biomarkers thus mayplay significant roles in the biological pathways of CVD-depressioncomorbidity. Additionally, the projected network highlights sex and BMI as themost important risk factors, or confounders, associated with the comorbidity.Our method can generalize to any number of omics layers and disease phenotypes,offering a truly system-level overview of biological pathways contributing tocomorbidity.
心血管疾病(CVD)与抑郁症之间存在着明显的合并症,这种合并症可高度预测不良的临床结果。然而,其潜在的生物学途径仍然难以破解,这可能是由于它与多种机制之间的非线性关联。互信息为分析这种错综复杂的关系提供了一个框架。在这项研究中,我们提出了一种基于互信息相关性的多方投影方法,以构建多层疾病网络。我们将该方法应用于 "芬兰青年研究"(Young Finns Study)的一个波次的横断面数据集。该数据集评估了心血管疾病和抑郁症,以及相关的风险因素和两个全息生物标志物:代谢物和血脂。我们没有直接将心血管疾病相关表型和抑郁症状联系起来,而是扩展了双分型网络的概念,创建了一个多分型网络,将这些表型和症状变量与中间生物变量联系起来。从这些中间变量进行投影,就会产生一个加权多层网络,其中心血管疾病和抑郁症变量之间的每个链接都以其 "层"(即代谢组或脂质组)为标记。利用这种预测方法,我们确定了连接心血管疾病和抑郁症的潜在中介生物标志物。因此,这些生物标志物可能在心血管疾病-抑郁症的生物学路径中发挥重要作用。我们的方法可以推广到任何数量的omics层和疾病表型,提供了一个真正系统级的导致合并症的生物通路概览。
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引用次数: 0
M2L Translation Operators for Kernel Independent Fast Multipole Methods on Modern Architectures 现代架构上内核独立快速多极子方法的 M2L 转换算子
Pub Date : 2024-08-14 DOI: arxiv-2408.07436
Srinath Kailasa, Timo Betcke, Sarah El Kazdadi
Current and future trends in computer hardware, in which the disparitybetween available flops and memory bandwidth continues to grow, favouralgorithm implementations which minimise data movement even at the cost of moreflops. In this study we review the requirements for high performanceimplementations of the kernel independent Fast Multipole Method (kiFMM), avariant of the crucial FMM algorithm for the rapid evaluation of N-bodypotential problems. Performant implementations of the kiFMM typically rely onFast Fourier Transforms for the crucial M2L (Multipole-to-Local) operation.However, in recent years for other FMM variants such as the black-box FMM alsoBLAS based M2L translation operators have become popular that rely on directmatrix compression techniques. In this paper we present algorithmicimprovements for BLAS based M2L translation operator and benchmark them againstFFT based M2L translation operators. In order to allow a fair comparison wehave implemented our own high-performance kiFMM algorithm in Rust that performscompetitively against other implementations, and allows us to flexibly switchbetween BLAS and FFT based translation operators.
当前和未来计算机硬件的发展趋势是,可用闪存和内存带宽之间的差距不断扩大,因此,即使以更多的闪存为代价,也要尽量减少数据移动的算法实现。在本研究中,我们回顾了内核独立快速多极法(kiFMM)高性能实现的要求,kiFMM 是用于快速评估 N 体势垒问题的关键 FMM 算法的一个变体。kiFMM 的高性能实现通常依赖于快速傅立叶变换来实现关键的 M2L(多极到局部)操作。然而,近年来,对于其他 FMM 变体,如黑盒 FMM,基于BLAS 的 M2L 变换算子也开始流行起来,这些算子依赖于直接矩阵压缩技术。在本文中,我们介绍了基于 BLAS 的 M2L 转换算子的算法改进,并将其与基于FFT 的 M2L 转换算子进行比较。为了进行公平的比较,我们在 Rust 中实现了自己的高性能 kiFMM 算法,其性能与其他实现相比具有竞争力,并允许我们在基于 BLAS 和基于 FFT 的翻译算子之间灵活切换。
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引用次数: 0
SSAAM: Sentiment Signal-based Asset Allocation Method with Causality Information SSAAM:基于情绪信号的资产配置方法(含因果关系信息
Pub Date : 2024-08-13 DOI: arxiv-2408.06585
Rei Taguchi, Hiroki Sakaji, Kiyoshi Izumi
This study demonstrates whether financial text is useful for tactical assetallocation using stocks by using natural language processing to create polarityindexes in financial news. In this study, we performed clustering of thecreated polarity indexes using the change-point detection algorithm. Inaddition, we constructed a stock portfolio and rebalanced it at each changepoint utilizing an optimization algorithm. Consequently, the asset allocationmethod proposed in this study outperforms the comparative approach. This resultsuggests that the polarity index helps construct the equity asset allocationmethod.
本研究通过使用自然语言处理技术创建财经新闻中的极性指数,证明了财经文本是否有助于利用股票进行战术资产配置。在本研究中,我们使用变化点检测算法对创建的极性指数进行了聚类。此外,我们还构建了一个股票投资组合,并利用优化算法在每个变化点进行再平衡。结果表明,本研究提出的资产配置方法优于比较方法。这一结果表明,极性指数有助于构建股票资产配置方法。
{"title":"SSAAM: Sentiment Signal-based Asset Allocation Method with Causality Information","authors":"Rei Taguchi, Hiroki Sakaji, Kiyoshi Izumi","doi":"arxiv-2408.06585","DOIUrl":"https://doi.org/arxiv-2408.06585","url":null,"abstract":"This study demonstrates whether financial text is useful for tactical asset\u0000allocation using stocks by using natural language processing to create polarity\u0000indexes in financial news. In this study, we performed clustering of the\u0000created polarity indexes using the change-point detection algorithm. In\u0000addition, we constructed a stock portfolio and rebalanced it at each change\u0000point utilizing an optimization algorithm. Consequently, the asset allocation\u0000method proposed in this study outperforms the comparative approach. This result\u0000suggests that the polarity index helps construct the equity asset allocation\u0000method.","PeriodicalId":501309,"journal":{"name":"arXiv - CS - Computational Engineering, Finance, and Science","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-08-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142211343","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
An improved point-to-surface contact algorithm with penalty method for peridynamics 改进的点对面接触算法与周动力学惩罚法
Pub Date : 2024-08-13 DOI: arxiv-2408.06556
Haoran Zhang, Lisheng Liu, Xin Lai, Jun Li
It is significantly challenging to obtain accurate contact forces inperidynamics (PD) simulations due to the difficulty of surface particlesidentification, particularly for complex geometries. Here, an improvedpoint-to-surface contact model is proposed for PD with high accuracy. First,the outer surface is identified using the eigenvalue method and then weconstruct a Verlet list to identify potential contact particle pairsefficiently. Subsequently, a point-to-surface contact search algorithm isutilized to determine precise contact locations with the penalty functionmethod calculating the contact force. Finally, the accuracy of thispoint-to-surface contact model is validated through several representativecontact examples. The results demonstrate that the point-to-surface contactmodel model can predict contact forces and deformations with high accuracy,aligning well with the classical Hertz contact theory solutions. This workpresents a contact model for PD that automatically recognizes external surfaceparticles and accurately calculates the contact force, which provides guidancefor the study of multi-body contact as well as complex contact situations.
在过流体力学(PD)模拟中,由于表面颗粒识别困难,尤其是在复杂几何形状下,要获得精确的接触力非常具有挑战性。本文提出了一种改进的高精度点对面接触模型。首先,使用特征值方法识别外表面,然后构建一个 Verlet 列表来有效识别潜在的接触粒子对。随后,利用点到面接触搜索算法确定精确的接触位置,并用惩罚函数法计算接触力。最后,通过几个有代表性的接触实例验证了这种点对面接触模型的准确性。结果表明,点到面接触模型可以高精度地预测接触力和变形,与经典的赫兹接触理论解法非常吻合。本研究提出了一种可自动识别外表面颗粒并精确计算接触力的点对点接触模型,为多体接触和复杂接触情况的研究提供了指导。
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引用次数: 0
High-order projection-based upwind method for simulation of transitional turbulent flows 基于高阶投影的上风法模拟过渡湍流
Pub Date : 2024-08-13 DOI: arxiv-2408.06698
Philip L. Lederer, Xaver Mooslechner, Joachim Schöberl
We present a scalable, high-order implicit large-eddy simulation (ILES)approach for incompressible transitional flows. This method employs themass-conserving mixed stress (MCS) method for discretizing the Navier-Stokesequations. The MCS method's low dissipation characteristics, combined with theintroduced operator-splitting solution technique, result in a high-order solveroptimized for efficient and parallel computation of under-resolved turbulentflows. We further enhance the inherent capabilities of the ILES model byincorporating high-order upwind fluxes and are examining its approximationbehaviour in transitional aerodynamic flow problems. In this study, we useflows over the Eppler 387 airfoil at Reynolds numbers up to $3 cdot 10^5$ asbenchmarks for our simulations.
我们提出了一种针对不可压缩过渡流动的可扩展高阶隐式大涡度模拟(ILES)方法。该方法采用质量守恒混合应力(MCS)方法离散纳维-斯托克方程。MCS 方法的低耗散特性与引入的算子拆分求解技术相结合,产生了一种优化的高阶求解器,可高效并行计算欠分辨湍流。通过加入高阶上风通量,我们进一步增强了 ILES 模型的固有能力,并正在研究其在过渡气动流问题中的近似行为。在这项研究中,我们使用雷诺数高达 3 cdot 10^5$ 的 Eppler 387 机翼上的流体作为模拟基准。
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引用次数: 0
Graph Neural Network Approach to Predict the Effects of Road Capacity Reduction Policies: A Case Study for Paris, France 预测道路通行能力削减政策效果的图神经网络方法:法国巴黎案例研究
Pub Date : 2024-08-13 DOI: arxiv-2408.06762
Elena Natterer, Roman Engelhardt, Sebastian Hörl, Klaus Bogenberger
Rapid urbanization and growing urban populations worldwide presentsignificant challenges for cities, including increased traffic congestion andair pollution. Effective strategies are needed to manage traffic volumes andreduce emissions. In practice, traditional traffic flow simulations are used totest those strategies. However, high computational intensity usually limitstheir applicability in investigating a magnitude of different scenarios toevaluate best policies. This paper introduces an innovative approach to assessthe effects of traffic policies using Graph Neural Networks (GNN). Byincorporating complex transport network structures directly into the neuralnetwork, this approach could enable rapid testing of various policies withoutthe delays associated with traditional simulations. We provide a proof ofconcept that GNNs can learn and predict changes in car volume resulting fromcapacity reduction policies. We train a GNN model based on a training setgenerated with a MATSim simulation for Paris, France. We analyze the model'sperformance across different road types and scenarios, finding that the GNN isgenerally able to learn the effects on edge-based traffic volume induced bypolicies. The model is especially successful in predicting changes on majorstreets. Nevertheless, the evaluation also showed that the current model hasproblems in predicting impacts of spatially small policies and changes intraffic volume in regions where no policy is applied due to spillovers and/orrelocation of traffic.
全球范围内的快速城市化和不断增长的城市人口给城市带来了重大挑战,包括交通拥堵和空气污染的加剧。需要有效的策略来管理交通流量和减少排放。在实践中,传统的交通流模拟被用来测试这些策略。然而,高计算强度通常限制了它们在调查大量不同情景以评估最佳政策方面的适用性。本文介绍了一种利用图神经网络(GNN)评估交通政策效果的创新方法。通过将复杂的交通网络结构直接纳入神经网络,这种方法可以快速测试各种政策,而不会出现传统模拟所带来的延迟。我们提供了一个概念验证,证明 GNN 可以学习和预测减少运力政策导致的汽车流量变化。我们基于法国巴黎 MATSim 仿真生成的训练集训练了一个 GNN 模型。我们分析了该模型在不同道路类型和场景下的表现,发现 GNN 一般能够学习政策对基于边缘的交通量的影响。该模型在预测主要街道的变化方面尤为成功。然而,评估结果也表明,由于溢出效应和/或交通流量的迁移,当前模型在预测空间上较小的政策影响和未实施政策区域的交通流量变化方面存在问题。
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引用次数: 0
期刊
arXiv - CS - Computational Engineering, Finance, and Science
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