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Expert-Level Detection of Referable Glaucoma from Fundus Photographs in a Safety Net Population: The AI and Teleophthalmology in Los Angeles Initiative 在安全网人群中通过眼底照片进行专家级可转诊青光眼检测:洛杉矶人工智能和远程眼科计划
Pub Date : 2024-08-26 DOI: 10.1101/2024.08.25.24312563
Van Nguyen, Sreenidhi Iyengar, Haroon Rasheed, Galo Apolo, Zhiwei Li, Aniket Kumar, Hong Nguyen, Austin Bohner, Rahul Dhodapkar, Jiun Do, Andrew Duong, Jeffrey Gluckstein, Kendra Hong, Alanna James, Junhui Lee, Kent Nguyen, Brandon Wong, Jose-Luis Ambite, Carl Kesselman, Lauren Daskivich, Michael Pazzani, Benjamin Xu
Purpose: To develop and test a deep learning (DL) algorithm for detecting referable glaucoma in the Los Angeles County (LAC) Department of Health Services (DHS) teleretinal screening program. Methods: Fundus photographs and patient-level labels of referable glaucoma (defined as cup-to-disc ratio [CDR] <= 0.6) provided by 21 trained optometrist graders were obtained from the LAC DHS teleretinal screening program. A DL algorithm based on the VGG-19 architecture was trained using patient-level labels generalized to images from both eyes. Area under the receiver operating curve (AUC), sensitivity, and specificity were calculated to assess algorithm performance using an independent test set that was also graded by 13 clinicians with one to 15 years of experience. Algorithm performance was tested using reference labels provided by either LAC DHS optometrists or an expert panel of 3 glaucoma specialists.Results: 12,098 images from 5,616 patients (2,086 referable glaucoma, 3,530 non-glaucoma) were used to train the DL algorithm. In this dataset, mean age was 56.8 +/- 10.5 years with 54.8% females and 68.2% Latinos, 8.9% Blacks, 2.7% Caucasians, and 6.0% Asians. 1,000 images from 500 patients (250 referable glaucoma, 250 non-glaucoma) with similar demographics (p <= 0.57) were used to test the DL algorithm. Algorithm performance matched or exceeded that of all independent clinician graders in detecting patient-level referable glaucoma based on LAC DHS optometrist (AUC = 0.92) or expert panel (AUC = 0.93) reference labels. Clinician grader sensitivity (range: 0.33-0.99) and specificity (range: 0.68-0.98) ranged widely and did not correlate with years of experience (p <= 0.49). Algorithm performance (AUC = 0.93) also matched or exceeded the sensitivity (range: 0.78-1.00) and specificity (range: 0.32-0.87) of 6 LAC DHS optometrists in the subsets of the test dataset they graded based on expert panel reference labels.Conclusions: A DL algorithm for detecting referable glaucoma developed using patient-level data provided by trained LAC DHS optometrists approximates or exceeds performance by ophthalmologists and optometrists, who exhibit variable sensitivity and specificity unrelated to experience level. Implementation of this algorithm in screening workflows could help reallocate eye care resources and provide more reproducible and timely glaucoma care.
目的:在洛杉矶县(LAC)卫生服务部(DHS)的远程视网膜筛查项目中,开发并测试用于检测可转诊青光眼的深度学习(DL)算法。方法:从洛杉矶县卫生服务部远程视网膜筛查项目中获取眼底照片和由 21 名训练有素的验光师分级员提供的可转诊青光眼患者级别标签(定义为杯盘比 [CDR] <=0.6)。基于 VGG-19 架构的 DL 算法使用患者级标签对双眼图像进行了通用化训练。通过计算接收者操作曲线下面积(AUC)、灵敏度和特异性来评估算法的性能,使用的独立测试集也由 13 位具有 1 到 15 年经验的临床医生进行分级。算法性能使用拉加人口与健康调查验光师或由 3 位青光眼专家组成的专家小组提供的参考标签进行测试:来自 5,616 名患者(2,086 名可转诊青光眼患者,3,530 名非青光眼患者)的 12,098 张图像被用于训练 DL 算法。在该数据集中,平均年龄为 56.8 +/- 10.5 岁,女性占 54.8%,拉丁裔占 68.2%,黑人占 8.9%,白种人占 2.7%,亚洲人占 6.0%。来自 500 名患者(250 名可转诊青光眼患者,250 名非青光眼患者)的 1000 张图像被用于测试 DL 算法,这些患者的人口统计学特征相似(p <=0.57)。在根据 LAC DHS 眼科视光师(AUC = 0.92)或专家小组(AUC = 0.93)参考标签检测患者水平的可转诊青光眼方面,该算法的性能与所有独立临床医生分级人员的性能相匹配或超过。临床医生分级的敏感性(范围:0.33-0.99)和特异性(范围:0.68-0.98)差别很大,且与经验年限无关(p <=0.49)。算法性能(AUC = 0.93)也符合或超过了 6 名拉丁美洲和加勒比地区人口与健康调查验光师根据专家组参考标签对测试数据集子集进行分级的灵敏度(范围:0.78-1.00)和特异度(范围:0.32-0.87):利用受过培训的拉丁美洲和加勒比地区人口与健康调查验光师提供的患者水平数据开发的可转诊青光眼检测DL算法接近或超过了眼科医生和验光师的表现,而眼科医生和验光师表现出的灵敏度和特异性与经验水平无关。在筛查工作流程中采用这种算法有助于重新分配眼科护理资源,并提供更可重复、更及时的青光眼护理。
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引用次数: 0
OCT-based Visual Field Estimation Using Segmentation-free 3D CNN Shows Lower Variability than Subjective Standard Automated Perimetry 利用无分割三维 CNN 进行基于光学视网膜的视野估计比主观标准自动周边测量法显示出更低的变异性
Pub Date : 2024-08-19 DOI: 10.1101/2024.08.17.24312150
Makoto Koyama, Satoru Inoda, Yuta Ueno, Yoshikazu Ito, Tetsuro Oshika, Masaki Tanito
Purpose: To train and evaluate a segmentation-free 3D convolutional neural network (3DCNN) model for estimating visual field (VF) from optical coherence tomography (OCT) images and to compare the residual variability of OCT-based estimated VF (OCT-VF) with that of Humphrey Field Analyzer (HFA) measurements in a diverse clinical population.Design: Retrospective cross-sectional study.Participants: 5,351 patients (9,564 eyes) who underwent macular OCT imaging and Humphrey Field Analyzer (HFA) tests (24-2 or 10-2 test patterns) at a university hospital from 2006 to 2023. The dataset included 47,653 paired OCT-VF data points, including various ocular conditions.Methods: We trained a segmentation-free 3DCNN model based on the EfficientNet3D-b0 architecture on a comprehensive OCT dataset to estimate VF. We evaluated the model's performance using Pearson's correlation coefficient and Bland‒Altman analysis. We assessed residual variability using a jackknife resampling approach and compared OCT-VF and HFA datasets using generalized estimating equations (GEE), adjusting the number of VF tests, follow-up duration, age, and clustering by eye and patient.Main Outcome Measures: Correlations between estimated and measured VF thresholds and mean deviations (MDs), and residual variability of OCT-VF and HFA.Results: We observed strong correlations between the estimated and measured VF parameters (Pearson's r: 24-2 thresholds 0.893, MD 0.932; 10-2 thresholds 0.902, MD 0.945; all p < 0.001). Bland‒Altman analysis showed good agreement between the estimated and measured MD, with a slight proportional bias. GEE analysis demonstrated significantly lower residual variability for OCT-VF than for HFA (24-2 thresholds: 1.10 vs. 2.48 dB; 10-2 thresholds: 1.20 vs. 2.48 dB; all p < 0.001, Bonferroni-corrected), with lower variability across all test points, severities, and ages, thus highlighting the robustness of the segmentation-free 3DCNN approach in a heterogeneous clinical sample.Conclusions: A segmentation-free 3DCNN model objectively estimated VF from OCT images with high accuracy and significantly lower residual variability than subjective HFA measurements in a heterogeneous clinical sample, including patients with glaucoma and individuals with other ocular diseases. The improved reliability, lower variability, and objective nature of OCT-VF highlight its value for enhancing VF assessment and monitoring of various ocular conditions, potentially facilitating earlier detection of progression and more efficient disease management.
目的:训练和评估一种无分割三维卷积神经网络(3DCNN)模型,用于从光学相干断层扫描(OCT)图像中估计视野(VF),并在不同临床人群中比较基于OCT估计的VF(OCT-VF)与汉弗莱视野分析仪(HFA)测量的残差:设计:回顾性横断面研究:5351名患者(9564只眼睛)于2006年至2023年期间在一家大学医院接受了黄斑OCT成像和汉弗莱视场分析仪(HFA)测试(24-2或10-2测试模式)。数据集包括 47,653 个成对的 OCT-VF 数据点,其中包括各种眼部状况:我们在综合 OCT 数据集上训练了一个基于 EfficientNet3D-b0 架构的无分割 3DCNN 模型,以估计 VF。我们使用皮尔逊相关系数和 Bland-Altman 分析评估了模型的性能。我们使用杰克刀重采样方法评估了残余变异性,并使用广义估计方程(GEE)比较了OCT-VF和HFA数据集,调整了VF测试次数、随访时间、年龄以及按眼睛和患者分组的情况:主要结果指标:估计VF阈值和测量VF阈值与平均偏差(MD)之间的相关性,以及OCT-VF和HFA的残差:我们观察到估计和测量的 VF 参数之间存在很强的相关性(Pearson's r:24-2 阈值 0.893,MD 0.932;10-2 阈值 0.902,MD 0.945;所有 p < 0.001)。Bland-Altman 分析表明,估计值与测量值之间的一致性良好,但存在轻微的比例偏差。GEE 分析表明,OCT-VF 的残差明显低于 HFA(24-2 阈值:1.10 vs. 2.48):1.10 vs. 2.48 dB; 10-2 thresholds:1.20 vs. 2.48 dB; all p < 0.001, Bonferroni-corrected),所有测试点、严重程度和年龄的变异性都更低,从而突出了无分割 3DCNN 方法在异质性临床样本中的稳健性:结论:在包括青光眼患者和其他眼部疾病患者在内的异质性临床样本中,无分割 3DCNN 模型能从 OCT 图像中客观估计 VF,与主观 HFA 测量值相比,准确性高,残余变异性低得多。OCT-VF 可靠性更高、变异性更低,而且具有客观性,这凸显了它在加强 VF 评估和监测各种眼部疾病方面的价值,可能有助于更早地发现病情发展和更有效地进行疾病管理。
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引用次数: 0
Reading; through the eyes of a university student: A double-masked randomised placebo-controlled cross-over protocol investigating coloured spectacle lens efficacy in adults with visual stress. 大学生眼中的阅读:双掩蔽随机安慰剂对照交叉方案,研究彩色眼镜片对有视觉压力的成年人的疗效。
Pub Date : 2024-08-19 DOI: 10.1101/2024.08.18.24312188
Darragh Liam Harkin, Julie-Anne Little, Sara J. McCullough
Background:Visual stress is a reading disorder characterised by perceptual distortions, asthenopia and headache whilst reading, alongside increased sensitivity to repeated striped patterns (‘pattern glare’), in the absence of underlying ocular pathology. Coloured filters including tinted spectacle lenses and coloured overlays/acetates have been reported to ameliorate visual stress symptoms. However, evidence on coloured spectacle lenses efficacy at managing symptoms of visual stress, particularly in adults, is lacking, with two recent systematic reviews advocating the need for large-scale randomised control trials. Methods:This is a double-masked randomised placebo-controlled trial. University students identified with symptoms of visual stress, through use of a reading symptom questionnaire and mid-spatial frequency pattern glare test, will be recruited. Sample size for power of 90% at 5% significance, accounting for 10% dropout will be 65. Participants will be randomly assigned experimental and control coloured spectacle lenses to wear for six weeks followed by a two week washout period, prior to wear of the alternate lenses for a further six weeks with a two week washout period. Participants will compare both sets of spectacle lenses in a ‘head-to-head’ comparison after the secondary washout period, prior to choosing the preferred lenses for voluntary future wear. Long-term adherence to the preferred lenses will be assessed three months post-comparison. Researchers and participants will be masked to spectacle lenses worn throughout the duration of the trial. Reading performance will be assessed with both sets of lenses at various time points within the trial. A range of reading tests, reading symptoms and pattern glare evaluation will be used to monitor change in reading performance and visual stress symptoms during the trial. Discussion:The study will evaluate the hypothesis that coloured spectacle lenses increase reading speed and reduce severity and frequency of reading symptoms in adults with visual stress. Trial Registration:The trial is registered at clinicaltrials.gov: NCT04318106
背景:视觉压力是一种阅读障碍,其特征是在没有潜在眼部病变的情况下,阅读时出现知觉失真、散光和头痛,同时对重复的条纹图案("图案眩光")更加敏感。据报道,彩色滤光片(包括有色眼镜片和彩色覆盖物/醋酸盐)可改善视觉压力症状。然而,有关彩色眼镜片在控制视觉压力症状(尤其是成人)方面的功效的证据还很缺乏,最近的两篇系统综述都主张需要进行大规模的随机对照试验。方法:这是一项双掩蔽随机安慰剂对照试验。将招募通过阅读症状问卷和中空间频率模式眩光测试确定有视觉压力症状的大学生。考虑到 10% 的辍学率,样本量为 65 个,在 5%的显著性水平下,功率为 90%。参与者将被随机分配实验镜片和对照组彩色眼镜片,分别配戴六周和两周的清洗期,然后再配戴备用镜片六周和两周的清洗期。二次清洗期结束后,参与者将对两组眼镜片进行 "正面对正面 "比较,然后选择自己喜欢的镜片,今后自愿配戴。比较三个月后,将对是否长期佩戴首选镜片进行评估。在整个试验过程中,研究人员和参与者都将对所佩戴的眼镜片进行蒙蔽。将在试验期间的不同时间点对两组镜片的阅读表现进行评估。在试验期间,将使用一系列阅读测试、阅读症状和模式眩光评估来监测阅读表现和视觉压力症状的变化。讨论:本研究将对以下假设进行评估:彩色眼镜片能提高阅读速度,并能减轻有视觉压力的成年人的阅读症状的严重程度和频率。试验注册:该试验已在 clinicaltrials.gov 注册:NCT04318106
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引用次数: 0
Characteristics and Predictors of Pediatric and Adult Patients with Inherited Retinal Degenerations at Time of Presentation: Tertiary Care Ophthalmology Clinic Data 遗传性视网膜变性的儿童和成人患者发病时的特征和预测因素:三级眼科诊所数据
Pub Date : 2024-08-16 DOI: 10.1101/2024.08.15.24312074
Matthew T McLaughlin, Caleb P Ganansky, Ayman W Taher, Melissa A Trudrung, William Van De Car, Jonathan Le, Kyle D. Peterson, Kimberly E Stepien, Melanie A Schmitt
Inherited Retinal Degenerations (IRDs) are a group of diseases where genetic variants lead to retinal photoreceptor dysfunction and subsequent visual impairment. We aimed to compare the characteristics of pediatric versus adult IRD patients at the time of presentation at a tertiary care IRD clinic. A retrospective chart review of 538 patients with IRDs was conducted. Information obtained included age, diagnosis, presenting characteristics, demographics, distance from the clinic, and referring physician. This study found that high hyperopia, congenital syndactyly, high refractive error, high astigmatism, and a history of developmental delay were most predictive of pediatric presentation. In adults, we found reduced central vision, peripheral vision loss, color vision deficits, nyctalopia, flashes/floaters, cataracts, diabetes mellitus, obesity, cardiac conditions, and a family history of cataract were most predictive of presentation. There was a greater proportion of pediatric patients presenting from 20 or more miles away. Additionally, there was no significant difference between the type of healthcare provider referring adult or pediatric patients. This study identifies characteristics predictive of pediatric and adult presentation in IRD patients thus addressing current knowledge gaps. A better understanding of these characteristics may provide for quicker recognition, education of clinicians likely to encounter IRDs, and allow for earlier treatment.
遗传性视网膜变性(IRD)是一组由基因变异导致视网膜感光器功能障碍并继发视力损伤的疾病。我们的目的是比较儿童和成人 IRD 患者在一家三级医疗机构 IRD 诊所就诊时的特征。我们对 538 名 IRD 患者进行了回顾性病历审查。获得的信息包括年龄、诊断、发病特征、人口统计学特征、与诊所的距离以及转诊医生。这项研究发现,高度远视、先天性联合畸形、高度屈光不正、高度散光和发育迟缓病史是儿科发病的主要预测因素。在成人患者中,我们发现中心视力下降、周边视力下降、色觉障碍、夜盲症、闪光/漂浮物、白内障、糖尿病、肥胖、心脏病和白内障家族史对发病最有预测性。从 20 英里或更远的地方前来就诊的儿童患者比例更高。此外,转诊成人或儿科患者的医疗服务提供者类型也没有明显差异。这项研究确定了预测 IRD 儿童和成人患者发病的特征,从而弥补了目前的知识空白。更好地了解这些特征有助于更快地识别IRD,教育可能遇到IRD的临床医生,并尽早进行治疗。
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引用次数: 0
Novel non-invasive physical photobiomodulation can treat congenital colour vision deficiency and enhance color vision recognition ability: a randomized, single blind, controlled clinical trial 新型无创物理光生物调节疗法可治疗先天性色觉缺陷并提高色觉识别能力:随机、单盲、对照临床试验
Pub Date : 2024-08-16 DOI: 10.1101/2024.08.13.24311912
Nandi Bao, Liang Jia
Background: Color vision deficiency (CVD) is a common congenital ophthalmic disease, and no effective therapeutic measures are currently available for this patient population. This study aimed to explore the efficacy of photobiomodulation (PBM) in CVD patients. Methods: A randomized controlled trial design was applied in this study, whereby 80 patients with red-green CVD were randomly divided into PBM treatment and control groups. Color vision was assessed after 1, 2, and 4 weeks of treatment. Statistical analysis of treatment was carried out using the Kruskal-Wallis test with Dunn's test for multiple comparisons using SPSS and R software. Findings: Compared to the control group, the color vision of CVD patients exhibited a significant improvement in the PBM treatment group for different parameters (Ps<0.05). Interpretation: PBM therapy could significantly improve color vision in patients with congenital CVD, especially in patients with green CVD.
背景:色觉缺失症(CVD)是一种常见的先天性眼科疾病,目前还没有针对这一患者群体的有效治疗措施。本研究旨在探讨光生物调节(PBM)对色觉障碍患者的疗效。研究方法本研究采用随机对照试验设计,将 80 名红绿色盲患者随机分为 PBM 治疗组和对照组。分别在治疗 1 周、2 周和 4 周后进行色觉评估。使用 SPSS 和 R 软件对治疗进行统计分析,采用 Kruskal-Wallis 检验和 Dunn's 检验进行多重比较。研究结果与对照组相比,PBM 治疗组 CVD 患者的色觉在不同参数上都有显著改善(Ps<0.05)。解释:PBM疗法能明显改善色觉:PBM疗法可明显改善先天性心血管疾病患者的色觉,尤其是绿色心血管疾病患者。
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引用次数: 0
Prevalence of blindness and vision impairment among people 50 years and older in Nepal: a national Rapid Assessment of Avoidable Blindness survey 尼泊尔 50 岁及以上人群中失明和视力受损的普遍程度:全国可避免失明快速评估调查
Pub Date : 2024-08-07 DOI: 10.1101/2024.08.06.24311588
Sailesh Mishra, Ranjan Shah, Parikshit Gogate, Yuddha Dhoj Sapkota, Reeta Gurung, Mohan Shrestha, Islay Mactaggart, Ian McCormick, Brish Bahadur Shahi, Rajiv Khandekar, Matthew Burton
Purpose: To determine the prevalence and causes of blindness and vision impairment among people 50 years and older in Nepal.Methods: We conducted seven provincial-level Rapid Assessment of Avoidable Blindness (RAAB) cross-sectional, population-based surveys between 2018-2021. Provincial prevalence estimates were weighted to give nationally representative estimates. Sampling, enumeration, and examination of the population 50 years and older were done at the province level following standard RAAB protocol.Results: Across seven surveys, we enrolled 33,228 individuals, of whom 32,565 were examined (response rate 98%). Females (n=17,935) made up 55% of the sample. The age-sex-province weighted national prevalence of blindness (better eye presenting visual acuity <3/60) was 1.1% (95% confidence interval [CI] 1.0-1.2%), and any vision impairment <6/12 was 20.7% (95% CI 19.9-21.5%). The prevalence of blindness and any vision impairment were both higher in women than men (1.3% [95% CI 1.1-1.5%] vs 0.9% [95% CI 0.7-1.0%]). Age-sex weighted blindness prevalence was highest in Lumbini Province (1.8% [95% CI 1.3-2.2%]) and lowest in Bagmati Province (0.7% [95% CI 0.4-0.9%]) and Sudurpaschim Province (0.7% [95% CI 0.4-0.9%]). Cataract (65.2%) was the leading cause of blindness in our sample, followed by corneal opacity (6.4%), glaucoma (5.8%) and age-related macular degeneration (5.3%). Other posterior segment diseases accounted for 8.4% of cases.Conclusion: The prevalence of blindness was higher among women than men and varied by province. The Lumbini and Madesh Provinces in the Terai (plains) region had higher prevalence of blindness than elsewhere. Cataract was the leading cause of blindness, severe vision impairment and moderate vision impairment while refractive error was the leading cause of mild vision impairment.
目的:确定尼泊尔 50 岁及以上人群中失明和视力损伤的患病率和原因:我们在 2018-2021 年间进行了七次省级可避免盲症快速评估(RAAB)横断面人口调查。对省级患病率估计值进行了加权,以得出具有全国代表性的估计值。对 50 岁及以上人口的抽样、点名和检查均按照 RAAB 标准协议在省一级进行:在七次调查中,我们共登记了 33,228 人,其中 32,565 人接受了检查(应答率为 98%)。女性(人数=17,935)占样本的 55%。经年龄-性别-省份加权后,全国失明(较佳眼睛呈现视力<3/60)患病率为 1.1%(95% 置信区间 [CI] 1.0-1.2%),任何视力损伤<6/12 的患病率为 20.7%(95% CI 19.9-21.5%)。女性的失明率和视力受损率均高于男性(1.3% [95% CI 1.1-1.5%] vs 0.9% [95% CI 0.7-1.0%])。年龄-性别加权失明率在蓝毗尼省最高(1.8% [95% CI 1.3-2.2%]),在巴格马蒂省(0.7% [95% CI 0.4-0.9%])和苏杜帕辛省(0.7% [95% CI 0.4-0.9%])最低。在我们的样本中,白内障(65.2%)是导致失明的主要原因,其次是角膜混浊(6.4%)、青光眼(5.8%)和老年性黄斑变性(5.3%)。其他后节疾病占 8.4%:结论:女性失明率高于男性,各省的情况也不尽相同。特莱(平原)地区的蓝毗尼省和马德什省的失明率高于其他地区。白内障是导致失明、严重视力损伤和中度视力损伤的主要原因,而屈光不正则是导致轻度视力损伤的主要原因。
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引用次数: 0
Retinograd-AI: An Open-source Automated Fundus Autofluorescence Retinal Image Gradability Assessment for Inherited Retinal Dystrophies Retinograd-AI:针对遗传性视网膜营养不良症的开源自动眼底自动荧光视网膜图像渐变性评估系统
Pub Date : 2024-08-07 DOI: 10.1101/2024.08.07.24311607
Gunjan Naik, Saoud Al-Khuzaei, Ismail Moghul, Thales A. C. de Guimaraes, Sagnik Sen, Malena Daich Varela, Yichen Liu, Pallavi Bagga, Dun Jack Fu, Mariya Moosajee, Savita Madhusudhan, Andrew Webster, Samantha De Silva, Praveen J. Patel, Omar Mahroo, Susan M Downes, Michel Michaelides, Konstantinos Balaskas, Nikolas Pontikos, William Woof
Purpose:To develop an automated system for assessing the quality of Fundus Autofluorescence (FAF) images in patients with inherited retinal diseases (IRD). Methods: We annotated a dataset of 2445 FAF images from patients with Inherited Retinal Dystrophies which were assessed by three different expert graders. Graders marked images as either gradable (acceptable quality) or ungradable (poor quality), following a strict grading protocol. This dataset was used to train a Convolutional Neural Network (CNN) classification model to predict the gradability label of FAF images. Results:Retinograd-AI achieves a performance of 91% accuracy on our held-out dataset of 133 images with an Area Under the Receiver Operator Characteristic (AUROC) of 0.94, indicating high performance in distinguishing between gradable and ungradable images. Applying Retinograd-AI to our full internal dataset, the highest proportion of gradable images was found in the 30-50 years age group, where 84.3% of images were rated as gradable, while the lowest was in 0-15 year olds, where only 45.2% of images were rated as gradable. 83.4% of images from male patients were rated as gradable, and 90.6% of images from female patients. By genotype, from the 30 most common genetic diagnoses, the highest proportion of gradable images was in patients with disease causing variants in PRPH2 (93.9%), while the lowest was RDH12 (28.6%). Eye2Gene single-image gene classification top-5 accuracy on images rated by Retinograd-AI was 69.2%, while top-5 accuracy on images rated as ungradable was 39.0%. Conclusions:Retinograd-AI is the first open-source AI model for automated retinal image quality assessment of FAF images in IRDs. Automated gradability assessment through Retinograd AI enables large scale analysis of retinal images, which is an essential part of developing good analysis pipelines, and real-time quality assessment, which is essential for deployment of AI algorithms, such as Eye2Gene, into clinical settings. Due to the diverse nature of IRD pathologies, Retinograd-AI may also be applicable to FAF imaging for other conditions, either in its current form or through transfer learning and fine-tuning. Retinograd-AI is open-sourced, and the source code and network weights are available under an MIT licence on GitHub at https://github.com/eye2gene/retinograd-ai.
目的:开发一套自动系统,用于评估遗传性视网膜疾病(IRD)患者眼底自动荧光(FAF)图像的质量。方法我们对遗传性视网膜营养不良症患者的 2445 张 FAF 图像数据集进行了标注,并由三位不同的专家分级员进行评估。分级者按照严格的分级协议将图像标记为可分级(质量可接受)或不可分级(质量差)。该数据集用于训练卷积神经网络(CNN)分类模型,以预测 FAF 图像的可分级标签。结果:Retinograd-AI 在我们保留的 133 幅图像数据集上达到了 91% 的准确率,接收器算子特征下面积(AUROC)为 0.94,这表明它在区分可分级和不可分级图像方面具有很高的性能。将 Retinograd-AI 应用于全部内部数据集后发现,30-50 岁年龄组中可分级图像的比例最高,84.3% 的图像被评为可分级,而 0-15 岁年龄组中可分级图像的比例最低,只有 45.2% 的图像被评为可分级。83.4% 的男性患者图像被评为可分级,90.6% 的女性患者图像被评为可分级。从基因型来看,在 30 种最常见的基因诊断中,PRPH2 致病变体患者的可分级图像比例最高(93.9%),最低的是 RDH12(28.6%)。Eye2Gene 单图像基因分类在 Retinograd-AI 评定的图像上的前 5 位准确率为 69.2%,而在评定为不可分级的图像上的前 5 位准确率为 39.0%。结论:Retinograd-AI 是首个开源的人工智能模型,用于对 IRD 中的 FAF 图像进行自动视网膜图像质量评估。通过 Retinograd AI 自动评估可对视网膜图像进行大规模分析(这是开发良好分析管道的重要部分)和实时质量评估(这对将 Eye2Gene 等人工智能算法应用于临床环境至关重要)。由于 IRD 病理的多样性,Retinograd-AI 也可适用于其他病症的 FAF 成像,无论是目前的形式还是通过迁移学习和微调。Retinograd-AI 是开源的,其源代码和网络权重可在 GitHub(https://github.com/eye2gene/retinograd-ai)上以 MIT 许可的方式获取。
{"title":"Retinograd-AI: An Open-source Automated Fundus Autofluorescence Retinal Image Gradability Assessment for Inherited Retinal Dystrophies","authors":"Gunjan Naik, Saoud Al-Khuzaei, Ismail Moghul, Thales A. C. de Guimaraes, Sagnik Sen, Malena Daich Varela, Yichen Liu, Pallavi Bagga, Dun Jack Fu, Mariya Moosajee, Savita Madhusudhan, Andrew Webster, Samantha De Silva, Praveen J. Patel, Omar Mahroo, Susan M Downes, Michel Michaelides, Konstantinos Balaskas, Nikolas Pontikos, William Woof","doi":"10.1101/2024.08.07.24311607","DOIUrl":"https://doi.org/10.1101/2024.08.07.24311607","url":null,"abstract":"Purpose:\u0000To develop an automated system for assessing the quality of Fundus Autofluorescence (FAF) images in patients with inherited retinal diseases (IRD). Methods: We annotated a dataset of 2445 FAF images from patients with Inherited Retinal Dystrophies which were assessed by three different expert graders. Graders marked images as either gradable (acceptable quality) or ungradable (poor quality), following a strict grading protocol. This dataset was used to train a Convolutional Neural Network (CNN) classification model to predict the gradability label of FAF images. Results:\u0000Retinograd-AI achieves a performance of 91% accuracy on our held-out dataset of 133 images with an Area Under the Receiver Operator Characteristic (AUROC) of 0.94, indicating high performance in distinguishing between gradable and ungradable images. Applying Retinograd-AI to our full internal dataset, the highest proportion of gradable images was found in the 30-50 years age group, where 84.3% of images were rated as gradable, while the lowest was in 0-15 year olds, where only 45.2% of images were rated as gradable. 83.4% of images from male patients were rated as gradable, and 90.6% of images from female patients. By genotype, from the 30 most common genetic diagnoses, the highest proportion of gradable images was in patients with disease causing variants in PRPH2 (93.9%), while the lowest was RDH12 (28.6%). Eye2Gene single-image gene classification top-5 accuracy on images rated by Retinograd-AI was 69.2%, while top-5 accuracy on images rated as ungradable was 39.0%. Conclusions:\u0000Retinograd-AI is the first open-source AI model for automated retinal image quality assessment of FAF images in IRDs. Automated gradability assessment through Retinograd AI enables large scale analysis of retinal images, which is an essential part of developing good analysis pipelines, and real-time quality assessment, which is essential for deployment of AI algorithms, such as Eye2Gene, into clinical settings. Due to the diverse nature of IRD pathologies, Retinograd-AI may also be applicable to FAF imaging for other conditions, either in its current form or through transfer learning and fine-tuning. Retinograd-AI is open-sourced, and the source code and network weights are available under an MIT licence on GitHub at https://github.com/eye2gene/retinograd-ai.","PeriodicalId":501390,"journal":{"name":"medRxiv - Ophthalmology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-08-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141942032","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Dichoptic Contrast Ordering Test: A method for measuring the depth of binocular imbalance 分色对比排序测试:测量双眼失衡深度的方法
Pub Date : 2024-08-06 DOI: 10.1101/2024.08.05.24311503
Alex S Baldwin, Marie-Celine Lorenzini, Annabel Wing-Yan Fan, Robert F Hess, Alexandre Reynaud
In binocular vision, the relative strength of the input from the two eyes can have significant functional impact. These inputs are typically balanced, however in some conditions (e.g. amblyopia) one eye will dominate over the other. To quantify imbalances in binocular vision, we have developed the Dichoptic Contrast Ordering Test (DiCOT). Implemented on a tablet device, the program uses rankings of perceived contrast (of dichoptically-presented stimuli) to find a scaling factor that balances the two eyes. We measured how physical interventions (applied to one eye) affect the DiCOT measurement. These were: i) neutral density filters, ii) Bangerter filters, and iii) optical blur introduced by a +3 D lens. The DiCOT results were compared to those from the Dichoptic Letter Test (DLT). Both the DiCOT and the DLT showed excellent test-retest reliability, however the magnitude of the imbalances introduced by the interventions was greater in the DLT. To find consistency between the methods, rescaling the DiCOT results from individual conditions gave good results. However, the adjustments needed for the +3 D lens condition were quite different from those for the ND and Bangerter filter. Our results indicate that the DiCOT and DLT measure partially separate aspects of binocular imbalance. This supports the simultaneous use of both measures in future studies.
在双眼视觉中,来自两只眼睛的输入的相对强度会对功能产生重大影响。这些输入通常是平衡的,但在某些情况下(如弱视),一只眼睛会支配另一只眼睛。为了量化双眼视觉的不平衡,我们开发了二分对比度排序测试(DiCOT)。该程序是在平板设备上实施的,它使用(二视刺激物的)感知对比度排序来找到平衡双眼视力的比例因子。我们测量了物理干预措施(应用于一只眼睛)对 DiCOT 测量的影响。这些干预措施包括:i) 中性密度滤光镜;ii) Bangerter 滤光镜;iii) +3 D 镜片带来的光学模糊。DiCOT 的结果与二分法字母测试 (DLT) 的结果进行了比较。DiCOT 和 DLT 都显示出极佳的测试重复可靠性,但在 DLT 中,干预措施造成的不平衡程度更大。为了找到两种方法之间的一致性,对个别条件下的 DiCOT 结果进行重新缩放得到了很好的结果。但是,+3 D 镜片条件下所需的调整与 ND 和 Bangerter 滤镜条件下所需的调整有很大不同。我们的结果表明,DiCOT 和 DLT 分别测量双眼失衡的部分不同方面。这支持在未来的研究中同时使用这两种测量方法。
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引用次数: 0
Assessing The Relationship Between Demand And Accessibility For Pediatric Ophthalmology Services By State In The United States 评估美国各州对小儿眼科服务的需求与可及性之间的关系
Pub Date : 2024-08-05 DOI: 10.1101/2024.08.03.24311451
Benton Chuter, Alex C Lieu, Justin Huynh, Jennifer J Bu, Linda M Zangwill
Purpose: To investigate the relationship between public demand for pediatric ophthalmology services and the accessibility of such services on a statewide basis in the United States, focusing on strabismus care.Methods: Using Google Trends data, search volumes for "strabismus" were analyzed from January 2014 to December 2023. Pediatric ophthalmologist availability was assessed via the American Academy of Ophthalmology directory, normalized for state population size to create a relative demand index. Additional metrics from the United States Census Bureau and Centers for Disease Control and Prevention provided socioeconomic and health data. Correlation coefficients were used to explore relationships between search volumes, specialist availability, vision screening, socioeconomics, and demographic factors.Results: The data revealed variability in public interest in pediatric ophthalmology across states, with Alaska showing the highest relative search volume for strabismus. The data also indicated notable disparities in pediatric ophthalmologist density, with North Dakota, Vermont, and Wyoming having no pediatric ophthalmologists. A significant correlation was identified between pediatric ophthalmologist availability and vision screening (R = 0.486, p < 0.001). Negative correlations were observed between the relative demand index and urbanization (R = -0.388, p = 0.007), as well as the strabismus prevalence (R = -0.455, p = 0.001), indicating that urbanization and specialist distribution influence eyecare demand and access.Conclusion: The findings highlight disparities in accessibility and demand for pediatric ophthalmology services across the US, influenced by urbanization and distribution of healthcare professionals. The study underscores the need for targeted interventions to improve access to care and bridge gaps in pediatric ophthalmology service provision.
目的:调查美国全州公众对小儿眼科服务的需求与此类服务可及性之间的关系,重点关注斜视治疗:方法: 利用谷歌趋势数据分析了 2014 年 1 月至 2023 年 12 月期间 "斜视 "的搜索量。小儿眼科医生的可用性通过美国眼科学会目录进行评估,并根据各州人口规模进行归一化处理,以创建相对需求指数。来自美国人口普查局和疾病控制与预防中心的其他指标提供了社会经济和健康数据。相关系数用于探讨搜索量、专家可用性、视力筛查、社会经济和人口因素之间的关系:数据显示,各州公众对小儿眼科的兴趣各不相同,其中阿拉斯加州的斜视搜索量最高。数据还显示小儿眼科医生的密度存在明显差异,北达科他州、佛蒙特州和怀俄明州没有小儿眼科医生。小儿眼科医生的可用性与视力筛查之间存在明显的相关性(R = 0.486,p < 0.001)。相对需求指数与城市化(R = -0.388,p = 0.007)和斜视患病率(R = -0.455,p = 0.001)之间呈负相关,表明城市化和专家分布影响了眼科需求和可及性:研究结果表明,受城市化和医疗保健专业人员分布的影响,美国儿童眼科服务的可及性和需求存在差异。这项研究强调,有必要采取有针对性的干预措施,以改善医疗服务的可及性,缩小小儿眼科服务供应方面的差距。
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引用次数: 0
Accuracy of a New Foundation Model in Glaucoma Detection using Ocular Coherence Tomography Images 利用眼相干断层扫描图像检测青光眼的新基础模型的准确性
Pub Date : 2024-08-05 DOI: 10.1101/2024.08.04.24311475
Benton Chuter, Justin Huynh, Evan Walker, Shahin Hallaj, Jalil Jalili, Jeffrey Liebmann, Massimo A Fazio, Christopher A Girkin, Robert N Weinreb, Mark Christopher, Linda M Zangwill
Purpose: To fine tune and evaluate the performance of the retinal foundation model (RETFound) on a diverse longitudinal clinical research dataset in glaucoma detection from optical coherence tomography (OCT) RNFL scans. Subanalyses of the model performance were evaluated across different subgroups, various dataset sample sizes and training cycles (epochs). Design: Evaluation of a diagnostic technology Subjects, Participants, and Controls: 15,216 Spectralis OCT RNFL circle scans of 747 individuals of diverse race (56.9% White, 37.8% Black / African American, and 5.3% Other / Not reported (5.3%), glaucoma severity (30.8% mild, 18.4% moderate-to-severe, and 50.9% no glaucoma), and age (44.8% <60 years, 55.2% >60 years) from the Diagnostic Innovations in Glaucoma Study (DIGS) and the African Descent and Glaucoma Evaluation Study (ADAGES). All OCT b scans were labeled as "Non-glaucomatous" or "Glaucomatous." Methods: RETFound was employed to perform binary glaucoma classification. The diagnostic accuracy of RETFound was iteratively tested across different combinations of dataset sample sizes (50 to 2000 OCT RNFL circle scans), epochs (5 to 50), and study subpopulations stratified by severity of glaucoma, age, and race). Main Outcome Measures: Area under receiver operating characteristic curve (AUC) for classifying RNFL scans as "Non-glaucomatous" or "Glaucomatous." Results: Performance metrics improved with larger training datasets and more training cycles, rising from an AUC of 0.61 (50 training images and 5 epochs) to AUC 0.91 (2,000 training images and 50 epochs). Gains in performance were marginal as training size increased beyond 500 scans. Performance was similar across race for all training size and cycle number combinations: African American (AUC=0.90) vs other (AUC=0.93). RNFL scans from older patients (>60 years) led to worse performance (AUC=0.85) compared to younger patients (<60 years, AUC=0.95), Performance was significantly higher for RNFL scans from patients with moderate-to-severe glaucoma vs mild glaucoma (AUC=0.99 vs 0.88, respectively). Conclusions: Good RETFound performance was observed with a relatively small sample size of images used for fine tuning and across differences in race and age. The ability of RETFound to adapt across a range of OCT training conditions and populations suggests it is a promising tool to automate glaucoma detection in a variety of use cases.
目的:微调和评估视网膜基础模型(RETFound)在从光学相干断层扫描(OCT)RNFL扫描中检测青光眼的各种纵向临床研究数据集上的性能。在不同的分组、不同的数据集样本大小和训练周期(epochs)中对模型性能进行了子分析评估。设计:诊断技术评估 对象、参与者和对照组:不同种族(56.9% 白人、37.8% 黑人/非裔美国人、5.3% 其他/未报告(5.3%))、青光眼严重程度(30.8% 轻度、18.4%为中重度,50.9%为无青光眼)、年龄(44.8%为 60 岁,55.2%为 60 岁),均来自青光眼诊断创新研究(DIGS)和非洲裔与青光眼评估研究(ADAGES)。所有 OCT b 扫描结果都被标记为 "非青光眼 "或 "青光眼"。方法:采用 RETFound 进行二元青光眼分类。在数据集样本大小(50 到 2000 个 OCT RNFL 圆扫描)、时间间隔(5 到 50 个)以及按青光眼严重程度、年龄和种族分层的研究亚群的不同组合中,对 RETFound 的诊断准确性进行了反复测试。)主要结果测量:将 RNFL 扫描分为 "非青光眼 "或 "青光眼 "的接收者操作特征曲线下面积 (AUC)。结果性能指标随着训练数据集的增大和训练周期的增加而提高,从 AUC 0.61(50 幅训练图像和 5 个历时)上升到 AUC 0.91(2,000 幅训练图像和 50 个历时)。当训练规模超过 500 次扫描时,性能的提高就微乎其微了。在所有训练规模和周期数组合中,不同种族的表现相似:非裔美国人(AUC=0.90) vs 其他种族(AUC=0.93)。与年轻患者(60 岁,AUC=0.95)相比,老年患者(60 岁)的 RNFL 扫描表现较差(AUC=0.85),中重度青光眼患者与轻度青光眼患者的 RNFL 扫描表现明显更高(AUC 分别为 0.99 与 0.88)。结论:尽管用于微调的图像样本量相对较小,但在不同种族和年龄的情况下,RETFound 仍能表现出良好的性能。RETFound 能够适应各种 OCT 训练条件和人群,这表明它是一种很有前途的工具,能在各种情况下自动检测青光眼。
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引用次数: 0
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medRxiv - Ophthalmology
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