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Generative artificial intelligence for computational chemistry: a roadmap to predicting emergent phenomena 用于计算化学的生成人工智能:预测突发现象的路线图
Pub Date : 2024-09-04 DOI: arxiv-2409.03118
Pratyush Tiwary, Lukas Herron, Richard John, Suemin Lee, Disha Sanwal, Ruiyu Wang
The recent surge in Generative Artificial Intelligence (AI) has introducedexciting possibilities for computational chemistry. Generative AI methods havemade significant progress in sampling molecular structures across chemicalspecies, developing force fields, and speeding up simulations. This Perspectiveoffers a structured overview, beginning with the fundamental theoreticalconcepts in both Generative AI and computational chemistry. It then coverswidely used Generative AI methods, including autoencoders, generativeadversarial networks, reinforcement learning, flow models and language models,and highlights their selected applications in diverse areas including forcefield development, and protein/RNA structure prediction. A key focus is on thechallenges these methods face before they become truly predictive, particularlyin predicting emergent chemical phenomena. We believe that the ultimate goal ofa simulation method or theory is to predict phenomena not seen before, and thatGenerative AI should be subject to these same standards before it is deemeduseful for chemistry. We suggest that to overcome these challenges, future AImodels need to integrate core chemical principles, especially from statisticalmechanics.
最近,生成式人工智能(AI)的迅猛发展为计算化学带来了令人兴奋的可能性。生成式人工智能方法在跨化学物种分子结构采样、开发力场和加速模拟方面取得了重大进展。本视角从生成式人工智能和计算化学的基本理论概念入手,提供了一个结构化的概述。然后介绍了广泛使用的生成式人工智能方法,包括自动编码器、生成对抗网络、强化学习、流模型和语言模型,并重点介绍了它们在力场开发和蛋白质/RNA结构预测等不同领域的应用。重点关注的是这些方法在成为真正的预测方法之前所面临的挑战,尤其是在预测新出现的化学现象方面。我们认为,模拟方法或理论的终极目标是预测前所未见的现象,而通用人工智能在被认为对化学有用之前,也应达到同样的标准。我们建议,为了克服这些挑战,未来的人工智能模型需要整合核心化学原理,尤其是统计力学原理。
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引用次数: 0
Fully polarized Fermi systems at finite temperature 有限温度下的全极化费米系统
Pub Date : 2024-09-04 DOI: arxiv-2409.02568
Krzysztof Myśliwy, Marek Napiórkowski
We propose a simple model of an interacting, fully spin--polarized Fermi gasin dimensions $d=2$ and $d=3$, and derive the approximate expression for theenergy spectrum and the corresponding formula for the Helmholtz free energy. Weanalyze the thermodynamics of the system and find the lines of first--orderphase transitions between the low and high density phases terminating atcritical points. The properties of the corresponding phase diagrams arequalitatively different for $d=2$ and $3$, and sensitively depend on theinterparticle attraction, which marks a departure from the standard van derWaals theory. The differences originate from the Pauli exclusion principle andare embeded in the fermionic nature of the system under study.
我们提出了一个尺寸为 $d=2$ 和 $d=3$ 的相互作用、完全自旋极化费米气体的简单模型,并推导出能谱的近似表达式和相应的赫尔姆霍兹自由能公式。我们分析了体系的热力学,找到了低密度相与高密度相之间以临界点为终点的一阶相变线。相应相图的性质在 $d=2$ 和 $3$ 时有定性差异,并敏感地取决于粒子间的吸引力,这标志着与标准范德华理论的背离。这些差异源于保利排斥原理,并蕴含在所研究体系的费米子性质中。
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引用次数: 0
Joint probability density of a passive article with force and magnetic field 带力和磁场的被动物品的联合概率密度
Pub Date : 2024-09-04 DOI: arxiv-2409.02401
Jae-Won Jung, Sung Kyu Seo, Kyungsik Kim
We firstly study the Navier-Stokes equation for the motion of a passiveparticle with harmonic, viscous, perturbative forces, subject to anexponentially correlated Gaussian force. Secondly, from the Fokker-Planckequation in an incompressible conducting fluid of magnetic field, weapproximately obtain the solution of the joint probability density by usingdouble Fourier transforms in three-time domains. In addition, the kurtosis, thecorrelation coefficient, and the moment from moment equation are numericallycalculated.
我们首先研究了受非指数相关高斯力作用的具有谐波、粘性、扰动力的被动粒子运动的纳维-斯托克斯方程。其次,从磁场不可压缩导电流体中的 Fokker-Planckequation 出发,通过在三时域中使用双傅里叶变换,我们大致得到了联合概率密度的解。此外,还对峰度、相关系数以及矩方程的矩进行了数值计算。
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引用次数: 0
Joint probability density with radial, tangential, and perturbative forces 径向力、切向力和扰动力的联合概率密度
Pub Date : 2024-09-04 DOI: arxiv-2409.02475
Jae-Won Jung, Sung Kyu Seo, Sungchul Kwon, Kyungsik Kim
We derive the Fokker-Planck equation for an active particle with both radialand tangential force and perturbative force, and its approximate solution ofjoint probability density is obtained. In t>>u and u=0 regions, an activeparticle leads to a super-diffusive distribution for radial velocity, while themean squared tangential velocity with both radial and tangential force andperturbative force behaviors the Gaussian diffusion. As a result, the jointprobability density obtained may be similarly consistent with that for theself-propelled particle.
我们推导了具有径向力、切向力和扰动力的主动粒子的福克-普朗克方程,并得到了其联合概率密度的近似解。在 t>>u 和 u=0 区域,主动粒子导致径向速度的超扩散分布,而同时具有径向力、切向力和扰动力的主题切向速度平方则表现为高斯扩散。因此,得到的联合概率密度可能与自推进粒子的概率密度相似。
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引用次数: 0
Driven Lorentz model in discrete time 离散时间中的驱动洛伦兹模型
Pub Date : 2024-09-04 DOI: arxiv-2409.02696
Dan Shafir, Alessio Squarcini, Stanislav Burov, Thomas Franosch
We consider a tracer particle performing a random walk on a two-dimensionallattice in the presence of immobile hard obstacles. Starting from equilibrium,a constant force pulling on the particle is switched on, driving the system toa new stationary state. Our study calculates displacement moments in discretetime (number of steps $N$) for an arbitrarily strong constant driving force,exact to first order in obstacle density. We find that for fixed driving force$F$, the approach to the terminal discrete velocity scales as $sim N^{-1}exp(- N F^2 / 16)$ for small $F$, differing significantly from the $simN^{-1}$ prediction of linear response. Besides a non-analytic dependence on theforce and breakdown of Einstein's linear response, our results show thatfluctuations in the directions of the force are enhanced in the presence ofobstacles. Notably, the variance grows as $sim N^3$ (superdiffusion) for $Fto infty$ at intermediate steps, reverting to normal diffusion ($sim N$) atlarger steps, a behavior previously observed in continuous time butdemonstrated here in discrete steps for the first time. Unlike the exponentialwaiting time case, the superdiffusion regime starts immediately at $N=1$. Theframework presented allows considering any type of waiting-time distributionbetween steps and transition to continuous time using subordination methods.Our findings are also validated through computer simulations.
我们考虑的是一个示踪粒子在二维网格上进行随机行走时遇到的不动硬障碍物。从平衡状态开始,粒子受到一个恒定力的牵引,驱动系统进入一个新的静止状态。我们的研究计算了任意强恒定驱动力在离散时间(步数 $N$)内的位移矩,精确到障碍物密度的一阶。我们发现,对于固定的驱动力$F$,在小$F$的情况下,接近终端离散速度的尺度为$sim N^{-1}exp(- N F^2 / 16)$,这与线性响应的预测值$simN^{-1}$有很大不同。除了对力的非解析依赖和爱因斯坦线性响应的破坏之外,我们的结果还表明,在存在障碍物的情况下,力的方向波动会增强。值得注意的是,在中间步长的$Fto infty$中,方差以$sim N^3$(超扩散)的形式增长,而在更大的步长中则恢复为正常扩散($sim N$),这种行为以前在连续时间中观察到过,但在这里首次在离散步长中得到了证明。与指数等待时间的情况不同,超扩散机制在 $N=1$ 时立即开始。我们提出的框架允许考虑步长之间任何类型的等待时间分布,并使用从属方法过渡到连续时间。
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引用次数: 0
Joint probability densities of an active particle coupled to two heat reservoirs 与两个热库耦合的活动粒子的联合概率密度
Pub Date : 2024-09-04 DOI: arxiv-2409.02411
Jae-Won Jung, Sung Kyu Seo, Kyungsik Kim
We derive a Fokker-Planck equation for joint probability density for anactive particle coupled two heat reservoirs with harmonic, viscous, randomforces. The approximate solution for the joint distribution density ofall-to-all and three others topologies is solved, which apply an exponentialcorrelated Gaussian force in three-time regions of correlation time. Meansquared displacement, velocity behaviors in the form of super-diffusion, whilethe mean squared displacement, velocity has the Gaussian form, normaldiffusion. Concomitantly, the Kurtosis, correlation coefficient, and momentfrom moment equation are approximately and numerically calculated.
我们推导了一个福克-普朗克方程,该方程用于计算活动粒子耦合两个具有谐波、粘性和随机力的热储层的联合概率密度。求解了全对全和其他三种拓扑结构的联合分布密度的近似解,其中在三个相关时间区域应用了指数相关高斯力。位移、速度的均方表现为超扩散形式,而位移、速度的均方则为高斯形式,即正态扩散。同时,对Kurtosis、相关系数以及矩方程的矩进行了近似和数值计算。
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引用次数: 0
Multifractaility, topology and anomalous Hall conductivity on a 30 degrees twisted bilayer honeycomb lattice 30 度扭曲双层蜂巢晶格上的多细微性、拓扑结构和反常霍尔电导率
Pub Date : 2024-09-04 DOI: arxiv-2409.02373
Grigory Bednik
We consider $30^{circ}$ twisted bilayer formed by two copies of Haldanemodel and explore evolution of its properties with varying interlayer couplingstrength. Specifically, we compute the system's energy spectrum, its fractaldimensions, topological entanglement entropy, local Chern markers and anomalousHall conductivity. We find that at weak interlayer coupling, the system remainsgapped and retains topological properties of the isolated layers, but at stronginterlayer coupling, the system forms a gapless multifractal state. We alsoestablish that anomalous Hall conductivity can be used to characterize thesystem's topological properties in the same way as a local Chern marker.
我们考虑了由两份霍尔丹模型形成的 $30^{circ}$ 扭曲双分子层,并探索了其在层间耦合强度变化时的性质演变。具体来说,我们计算了系统的能谱、分维数、拓扑纠缠熵、局部切尔恩标记和反常霍尔电导率。我们发现,当层间耦合较弱时,系统仍有间隙,并保留了孤立层的拓扑特性,但当层间耦合较强时,系统会形成无间隙的多分形态。我们还证明,反常霍尔电导率可以像局部切尔恩标记一样用来描述系统的拓扑特性。
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引用次数: 0
Highly complex novel critical behavior from the intrinsic randomness of quantum mechanical measurements on critical ground states -- a controlled renormalization group analysis 来自临界基态量子力学测量内在随机性的高度复杂新临界行为--受控重正化群分析
Pub Date : 2024-09-03 DOI: arxiv-2409.02107
Rushikesh A. Patil, Andreas W. W. Ludwig
We consider the effects of weak measurements on the quantum critical groundstate of the one-dimensional (a) tricritical and (b) critical quantum Isingmodel, by measuring in (a) the local energy and in (b) the local spin operatorin a lattice formulation. By employing a controlled renormalization group (RG)analysis we find that each problem exhibits highly complex novel scalingbehavior, arising from the intrinsically indeterministic ('random') nature ofquantum mechanical measurements, which is governed by a measurement-dominatedRG fixed point that we study within an $epsilon$ expansion. In the tricriticalIsing case (a) we find (i): multifractal scaling behavior of energy and spincorrelations in the measured groundstate, corresponding to an infinitehierarchy of independent critical exponents and, equivalently, to a continuumof universal scaling exponents for each of these correlations; (ii): thepresence of logarithmic factors multiplying powerlaws in correlation functions,a hallmark of 'logarithmic conformal field theories' (CFT); (iii): universal'effective central charges' $c^{({rm eff})}_n$ for the prefactors of thelogarithm of subsystem size of the $n$th R'enyi entropies, which areindependent of each other for different $n$, in contrast to the unmeasuredcritical ground state, and (iv): a universal ("Affleck-Ludwig") 'effectiveboundary entropy' $S_{rm{eff}}$ which we show, quite generally, to be relatedto the system-size independent part of the Shannon entropy of the measurementrecord, computed explicitly here to 1-loop order. - A subset of these resultshave so-far also been obtained within the $epsilon$ expansion for themeasurement-dominated critical point in the critical Ising case (b).
我们考虑了弱测量对一维(a)三临界和(b)临界量子伊辛模型的量子临界基态的影响,方法是在晶格形式中测量(a)局部能量和(b)局部自旋算子。通过采用受控重正化群(RG)分析,我们发现每个问题都表现出高度复杂的新缩放行为,这源于量子力学测量本质上的不确定性("随机"),它受测量主导的RG定点支配,我们在$epsilon$扩展中对其进行了研究。在三临界(a)情况下,我们发现(i):测量基态中能量和空间相关性的多分形缩放行为,对应于独立临界指数的无限层次,等同于每个相关性的普遍缩放指数的连续体;(ii):相关函数中存在乘以幂律的对数因子,这是 "对数共形场论"(CFT)的标志;(iii):普遍的 "有效中心电荷"$c^{({rm eff})}_n$,用于$n$第R'enyi熵的子系统大小的对数前因子,对于不同的$n$,它们是相互独立的,这与未测量的临界基态形成了对比;以及(iv):一个普遍的("阿弗莱克-路德维希")"有效边界熵"$S_{rm{eff}}$,我们在这里明确地计算出它与测量记录的香农熵的系统大小无关部分的1环阶相关。- 迄今为止,这些结果的一个子集也是在临界伊辛情况(b)中测量主导临界点的$epsilon$扩展中得到的。
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引用次数: 0
Probing the mesoscopics of competing interactions with the thermodynamic curvature: the case of a two-parameter ANNNI chain 用热力学曲率探测竞争性相互作用的中观现象:双参数 ANNNI 链的情况
Pub Date : 2024-09-03 DOI: arxiv-2409.01643
Soumen Khatua, Anurag Sahay
This work examines the full scope of long-standing conjectures identifyingthe invariant thermodynamic curvature $R$ as the correlation volume $xi^d$ andalso as a measure of underlying statistical interactions. To this end, we setup a two-parameter ANNNI (Axial Next Nearest Neighbour Ising) chain featuringtwo next nearest neighbour (nnn) and a nearest neighbour (nn) interaction.Competition between interactions and resulting frustration engender a richphase behaviour including a cross-over between two ferrimagnetic sub-phases. Weshow that $R$ attests to all its conjectured attributes with valuable insightsinto the character of mesoscopic fluctuating substructures. In a remarkabledemonstration of its relevance at a far-from-critical point, $R$ is shown toresolve a hitherto unnoticed tricky issue involving $xi$. A physicallytransparent expression for the zero field $R$ helps bring into focus thepivotal role played by some third order fluctuation moments.
这项工作研究了长期存在的猜想的全部范围,这些猜想将热力学不变曲率 $R$ 确定为相关体积 $xi^d$,并将其作为基本统计相互作用的度量。为此,我们建立了一个双参数 ANNNI(轴向近邻等效)链,它具有两个近邻(nnn)和一个近邻(nnn)相互作用。相互作用之间的竞争和由此产生的挫折产生了丰富的相态行为,包括两个铁磁性子相态之间的交叉。我们发现,$R$证明了它的所有猜想属性,并对介观波动子结构的特性提出了宝贵的见解。在一个远离临界点的地方,$R$显著地证明了它的相关性,它解决了一个迄今为止尚未被注意到的涉及$xi$的棘手问题。零场$R$的物理透明表达式有助于使人们关注某些三阶波动矩所起的关键作用。
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引用次数: 0
The effect of quenched heterogeneity on creep lifetimes of disordered materials 淬火异质性对无序材料蠕变寿命的影响
Pub Date : 2024-09-03 DOI: arxiv-2409.01766
Juan Carlos Verano Espitia, Jérôme Weiss, David Amitrano, Tero Mäkinen, Mikko Alava
We revisit the problem of describing creep in heterogeneous materials by aneffective temperature by considering more realistic (and complex)non-mean-field elastic redistribution kernels. We show first, from theoreticalconsiderations, that, if elastic stress redistribution and memory effects areneglected, the average creep failure time follows an Arrhenius expression withan effective temperature explicitly increasing with the quenched heterogeneity.Using a thermally activated progressive damage model of compressive failure, weshow that this holds true when taking into account elastic interactions andmemory effects, however with an effective temperature $T_{eff}$ depending aswell on the nature of the (non-democratic) elastic interaction kernel. Weobserve that the variability of creep lifetimes, for given external conditionsof load and temperature, is roughly proportional to the mean lifetime,therefore depends as well on $T$, on quenched heterogeneity, and the elastickernel. Finally, we discuss the implications of this effective temperatureeffect on the interpretation of macroscopic creep tests to estimate anactivation volume at the microscale.
通过考虑更现实(更复杂)的非均值场弹性再分布核,我们重新审视了用有效温度描述异质材料蠕变的问题。首先,我们从理论上证明,如果忽略弹性应力再分布和记忆效应,平均蠕变破坏时间遵循阿伦尼乌斯表达式,有效温度随淬火异质性的增加而增加。我们发现,在给定负载和温度的外部条件下,蠕变寿命的变化与平均寿命大致成正比,因此也取决于 $T$、淬火异质性和弹性内核。最后,我们讨论了这种有效温度效应对解释宏观蠕变试验以估算微观活化体积的影响。
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引用次数: 0
期刊
arXiv - PHYS - Statistical Mechanics
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