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Breaking the Brownian Barrier: Models and Manifestations of Molecular Diffusion in Complex Fluids 打破布朗障碍:复杂流体中的分子扩散模型与表现形式
Pub Date : 2024-09-06 DOI: arxiv-2409.04199
Harish Srinivasan, V. K. Sharma, S. Mitra
Over a century ago, Einstein formulated a precise mathematical model fordescribing Brownian motion. While this model adequately explains the diffusionof micron-sized particles in fluids, its limitations become apparent whenapplied to molecular self-diffusion in fluids. The foundational principles ofGaussianity and Markovianity, central to the Brownian diffusion paradigm, areinsufficient for describing molecular diffusion, particularly in complex fluidscharacterized by intricate intermolecular interactions and hindered relaxationprocesses. This perspective delves into the nuanced behavior observed indiverse complex fluids, including molecular self-assembly, deep eutecticsolvents, and ionic liquids, with a specific focus on modeling self-diffusionwithin these media. We explore the potential of extending diffusion models toincorporate non-Gaussian and non-Markovian effects by augmenting the Brownianmodel using non-local diffusion equations. Further, we validate theapplicability of these models by utilizing them to describe results fromquasielastic neutron scattering and MD simulations.
一个多世纪前,爱因斯坦提出了描述布朗运动的精确数学模型。虽然这一模型能够充分解释微米大小的粒子在流体中的扩散,但当它应用于流体中的分子自扩散时,其局限性就显而易见了。高斯性和马尔可夫性的基本原理是布朗扩散范式的核心,但不足以描述分子扩散,尤其是在分子间相互作用错综复杂、弛豫过程受阻的复杂流体中。本视角深入研究了在多种复杂流体(包括分子自组装、深共晶溶剂和离子液体)中观察到的细微行为,特别关注这些介质中的自扩散建模。通过使用非局部扩散方程增强布朗模型,我们探索了扩展扩散模型以纳入非高斯和非马尔可夫效应的潜力。此外,我们还利用这些模型来描述类弹性中子散射和 MD 模拟的结果,从而验证了这些模型的适用性。
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引用次数: 0
Cavity Control of Topological Qubits: Fusion Rule, Anyon Braiding and Majorana-Schrödinger Cat States 拓扑量子位的腔体控制:融合规则、安永编织和马约拉纳-薛定谔猫态
Pub Date : 2024-09-06 DOI: arxiv-2409.04515
Luis Quiroga, Fernando J. Gómez-Ruiz, Ivan A. Bocanegra-Garay, Ferney J. Rodríguez, Carlos Tejedor
We investigate the impact of introducing a local cavity within the center ofa topological chain, revealing profound effects on the system's quantum states.Notably, the cavity induces a scissor-like effect that bisects the chain,liberating Majorana zero modes (MZMs) within the bulk. Our results demonstratethat this setup enables the observation of non-trivial fusion rules andbraiding -- key signatures of non-Abelian anyons -- facilitated by thespatially selective ultra-strong coupling of the cavity photon field. These MZMcharacteristics can be directly probed through fermionic parity readouts andphoton Berry phases, respectively. Furthermore, by leveraging the symmetryproperties of fermion modes within a two-site cavity, we propose a novel methodfor generating MZM-polariton Schr"odinger cat states. Our findings present asignificant advancement in the control of topological quantum systems, offeringnew avenues for both fundamental research and potential quantum computingapplications.
我们研究了在拓扑链中心引入局部空腔的影响,揭示了对系统量子态的深远影响。值得注意的是,空腔诱导了一种类似剪刀的效应,将拓扑链一分为二,释放了体中的马约拉纳零模(MZMs)。我们的研究结果表明,在空腔光子场的空间选择性超强耦合作用下,这种设置能够观测到非三维融合规则和束缚--这是非阿贝尔任子的关键特征。这些 MZM 特性可以分别通过费米子奇偶性读出和光子贝里相来直接探测。此外,通过利用双位腔内费米子模式的对称特性,我们提出了一种生成 MZM 极子薛定谔猫态的新方法。我们的发现是拓扑量子系统控制领域的重大进展,为基础研究和潜在的量子计算应用提供了新途径。
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引用次数: 0
Colloidoscope: Detecting Dense Colloids in 3d with Deep Learning 胶体镜:利用深度学习检测 3D 中的致密胶体
Pub Date : 2024-09-06 DOI: arxiv-2409.04603
Abdelwahab Kawafi, Lars Kürten, Levke Ortlieb, Yushi Yang, Abraham Mauleon Amieva, James E. Hallett, C. Patrick Royall
Colloidoscope is a deep learning pipeline employing a 3D residual Unetarchitecture, designed to enhance the tracking of dense colloidal suspensionsthrough confocal microscopy. This methodology uses a simulated training datasetthat reflects a wide array of real-world imaging conditions, specificallytargeting high colloid volume fraction and low-contrast scenarios wheretraditional detection methods struggle. Central to our approach is the use ofexperimental signal-to-noise ratio (SNR), contrast-to-noise ratio (CNR), andpoint-spread-functions (PSFs) to accurately quantify and simulate theexperimental data. Our findings reveal that Colloidoscope achieves superiorrecall in particle detection (finds more particles) compared to conventionalheuristic methods. Simultaneously, high precision is maintained (high fractionof true positives.) The model demonstrates a notable robustness tophotobleached samples, thereby prolonging the imaging time and number of framesthan may be acquired. Furthermore, Colloidoscope maintains small scaleresolution sufficient to classify local structural motifs. Evaluated acrossboth simulated and experimental datasets, Colloidoscope brings the advancementsin computer vision offered by deep learning to particle tracking at high volumefractions. We offer a promising tool for researchers in the soft mattercommunity, this model is deployed and available to use pretrained:https://github.com/wahabk/colloidoscope.
Colloidoscope 是一种深度学习管道,采用三维残余 Unet 架构,旨在通过共聚焦显微镜增强对高密度胶体悬浮液的跟踪。这种方法使用的模拟训练数据集反映了现实世界的各种成像条件,特别是针对传统检测方法难以解决的高胶体体积分数和低对比度场景。我们方法的核心是使用实验信噪比(SNR)、对比度与噪声比(CNR)和点扩散函数(PSF)来精确量化和模拟实验数据。我们的研究结果表明,与传统的启发式方法相比,胶体镜在粒子检测方面具有更高的回收率(发现更多粒子)。同时,该模型还能保持较高的精确度(较高的真阳性率)。该模型在处理大量样本时表现出了显著的鲁棒性,从而延长了成像时间和可获取的帧数。此外,胶体镜还能保持小尺度的分辨率,足以对局部结构图案进行分类。通过对模拟数据集和实验数据集的评估,胶体镜将深度学习在计算机视觉方面的进步应用到了大体积颗粒跟踪中。我们为软物质领域的研究人员提供了一种前景广阔的工具,该模型已经部署并可用于预训练:https://github.com/wahabk/colloidoscope。
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引用次数: 0
Highly efficient path-integral molecular dynamics simulations with GPUMD using neuroevolution potentials: Case studies on thermal properties of materials 使用神经进化势的 GPUMD 高效路径积分分子动力学模拟:材料热特性案例研究
Pub Date : 2024-09-06 DOI: arxiv-2409.04430
Penghua Ying, Wenjiang Zhou, Lucas Svensson, Erik Fransson, Fredrik Eriksson, Ke Xu, Ting Liang, Bai Song, Shunda Chen, Paul Erhart, Zheyong Fan
Path-integral molecular dynamics (PIMD) simulations are crucial foraccurately capturing nuclear quantum effects in materials. However, theircomputational intensity and reliance on multiple software packages often limittheir applicability at large scales. Here, we present an integration of PIMDmethods, including thermostatted ring-polymer molecular dynamics (TRPMD), intothe open-source GPUMD package, combined with highly accurate and efficientmachine-learned neuroevolution potential (NEP) models. This approach achievesalmost the accuracy of first-principles calculations with the computationalefficiency of empirical potentials, enabling large-scale atomistic simulationsthat incorporate nuclear quantum effects. We demonstrate the efficacy of thecombined NEP-PIMD approach by examining various thermal properties of diversematerials, including lithium hydride (LiH), three porous metal-organicframeworks (MOFs), and elemental aluminum. For LiH, our NEP-PIMD simulationssuccessfully capture the isotope effect, reproducing the experimentallyobserved dependence of the lattice parameter on the reduced mass. For MOFs, ourresults reveal that achieving good agreement with experimental data requiresconsideration of both nuclear quantum effects and dispersive interactions. Foraluminum, the TRPMD method effectively captures thermal expansion and phononproperties, aligning well with quantum mechanical predictions. This efficientNEP-PIMD approach opens new avenues for exploring complex material propertiesinfluenced by nuclear quantum effects, with potential applications across abroad range of materials.
路径积分分子动力学(PIMD)模拟对于准确捕捉材料中的核量子效应至关重要。然而,其计算强度和对多种软件包的依赖往往限制了其在大尺度上的适用性。在这里,我们介绍了将 PIMD 方法(包括恒温环聚合物分子动力学 (TRPMD))与开源 GPUMD 软件包以及高精度、高效率的机器学习神经进化势 (NEP) 模型相结合的方法。这种方法几乎达到了第一原理计算的精度,同时又具有经验势的计算效率,从而实现了包含核量子效应的大规模原子模拟。我们通过研究包括氢化锂(LiH)、三种多孔金属有机框架(MOFs)和元素铝在内的多种材料的各种热特性,展示了 NEP-PIMD 组合方法的功效。对于氢化锂,我们的 NEP-PIMD 模拟成功地捕捉到了同位素效应,再现了实验所观测到的晶格参数对还原质量的依赖性。对于 MOFs,我们的结果表明,要实现与实验数据的良好一致性,需要同时考虑核量子效应和色散相互作用。对于铝,TRPMD 方法有效地捕捉了热膨胀和声子特性,与量子力学的预测结果非常吻合。这种高效的 NEP-PIMD 方法为探索受核量子效应影响的复杂材料特性开辟了新途径,有望应用于各种材料。
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引用次数: 0
Dimensional crossover via confinement in the lattice Lorentz gas 通过晶格洛伦兹气体中的约束实现维度交叉
Pub Date : 2024-09-06 DOI: arxiv-2409.04289
A. Squarcini, A. Tinti, P. Illien, O. Bénichou, T. Franosch
We consider a lattice model in which a tracer particle moves in the presenceof randomly distributed immobile obstacles. The crowding effect due to theobstacles interplays with the quasi-confinement imposed by wrapping the latticeonto a cylinder. We compute the velocity autocorrelation function and show thatalready in equilibrium the system exhibits a dimensional crossover from two- toone-dimensional as time progresses. A pulling force is switched on and wecharacterize analytically the stationary state in terms of the stationaryvelocity and diffusion coefficient. Stochastic simulations are used to discussthe range of validity of the analytic results. Our calculation, exact to firstorder in the obstacle density, holds for arbitrarily large forces andconfinement size.
我们考虑了一个晶格模型,在这个模型中,示踪粒子在随机分布的不动障碍物面前移动。障碍物造成的拥挤效应与将晶格包裹成圆柱体所施加的准封闭效应相互作用。我们计算了速度自相关函数,结果表明,随着时间的推移,已经处于平衡状态的系统出现了从二维到一维的维度交叉。开启拉力后,我们用静止速度和扩散系数来分析静止状态。随机模拟用于讨论分析结果的有效性范围。我们的计算结果与障碍物密度的一阶计算结果完全一致,适用于任意大的力和聚合尺寸。
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引用次数: 0
Boundary dissipative spin chains with partial solvability inherited from system Hamiltonians 从系统哈密顿继承部分可解性的边界耗散自旋链
Pub Date : 2024-09-05 DOI: arxiv-2409.03208
Chihiro Matsui, Naoto Tsuji
Partial solvability plays an important role in the context of statisticalmechanics, since it has turned out to be closely related to the emergence ofquantum many-body scar states, i.e., exceptional energy eigenstates which donot obey the strong version of the eigenstate themalization hypothesis. We showthat partial solvability of a quantum many-body system can be maintained evenwhen the system is coupled to boundary dissipators under certain conditions. Wepropose two mechanisms that support partially solvable structures in boundarydissipative systems: The first one is based on the restricted spectrumgenerating algebra, while the second one is based on the Hilbert spacefragmentation. From these structures, we derive exact eigenmodes of theGorini-Kossakowski-Sudarshan-Lindblad equation for a family of quantum spinchain models with boundary dissipators, where we find various intriguingphenomena arising from the partial solvability of the open quantum systems,including persistent oscillations (quantum synchronization) and the existenceof the matrix product operator symmetry. We discuss how the presence ofsolvable eigenmodes affects long-time behaviors of observables in boundarydissipative spin chains based on numerical simulations using the quantumtrajectory method.
部分可解性在统计力学中扮演着重要角色,因为它与量子多体痕态的出现密切相关,即不服从强版特征态特征化假说的特殊能量特征态。我们证明了量子多体系统的部分可解性,即使该系统在某些条件下与边界耗散器耦合,也能保持部分可解性。我们提出了两种支持边界耗散系统中部分可解结构的机制:第一种机制基于受限谱生成代数,第二种机制基于希尔伯特空间碎片。从这些结构中,我们推导出了一系列具有边界耗散器的量子自旋链模型的高里尼-科萨科夫斯基-苏达山-林德布拉德方程的精确特征模,在这些模型中,我们发现了开放量子系统的部分可解性所产生的各种有趣现象,包括持续振荡(量子同步)和矩阵积算子对称性的存在。我们基于量子轨迹法的数值模拟,讨论了可解特征模的存在如何影响边界耗散自旋链中观测值的长期行为。
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引用次数: 0
Bayesian inference of wall torques for active Brownian particles 活动布朗粒子壁面力矩的贝叶斯推理
Pub Date : 2024-09-05 DOI: arxiv-2409.03533
Sascha Lambert, Merle Duchene, Stefan Klumpp
The motility of living things and synthetic self-propelled objects is oftendescribed using Active Brownian particles. To capture the interaction of theseparticles with their often complex environment, this model can be augmentedwith empirical forces or torques, for example, to describe their alignment withan obstacle or wall after a collision. Here, we assess the quality of theseempirical models by comparing their output predictions with trajectories ofrod-shaped active particles that scatter sterically at a flat wall. We employ aclassical least-squares method to evaluate the instantaneous torque. Inaddition, we lay out a Bayesian inference procedure to construct the posteriordistribution of plausible model parameters. In contrast to the least squaresfit, the Bayesian approach does not require orientational data of the activeparticle and can readily be applied to experimental tracking data.
生物和合成自走物体的运动通常用主动布朗粒子来描述。为了捕捉这些粒子与其通常复杂的环境之间的相互作用,可以用经验力或力矩来增强这一模型,例如,用来描述碰撞后粒子与障碍物或墙壁的对齐情况。在这里,我们将这些经验模型的输出预测结果与在平面墙壁上发生立体散射的杆状活性粒子的轨迹进行比较,从而评估这些模型的质量。我们采用经典的最小二乘法来评估瞬时扭矩。此外,我们还制定了贝叶斯推理程序,以构建可信模型参数的后分布。与最小二乘法相比,贝叶斯推理方法不需要活动粒子的方向数据,可以很容易地应用于实验跟踪数据。
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引用次数: 0
Finite time path field theory perturbative methods for local quantum spin chain quenches 局部量子自旋链淬火的有限时间路径场论微扰方法
Pub Date : 2024-09-05 DOI: arxiv-2409.03832
Domagoj Kuić, Alemka Knapp, Diana Šaponja-Milutinović
We discuss local magnetic field quenches using perturbative methods of finitetime path field theory in the following spin chains: Ising and XY in atransverse magnetic field. Their common characteristics are: i) they areintegrable via mapping to second quantized noninteracting fermion problem; ii)when the ground state is nondegenerate (true for finite chains except inspecial cases) it can be represented as a vacuum of Bogoliubov fermions. Byswitching on a local magnetic field perturbation at finite time, the problembecomes nonintegrable and must be approached via numeric or perturbativemethods. Using the formalism of finite time path field theory based on Wignertransforms of projected functions, we show how to: i) calculate the basic"bubble" diagram in the Loschmidt echo of a quenched chain to any order in theperturbation; ii) resum the generalized Schwinger-Dyson equation for thefermion two point retarded functions in the "bubble" diagram, hence achievingthe resummation of perturbative expansion of Loschmidt echo for a wide range ofperturbation strengths under certain analiticity assumptions. Limitations ofthe assumptions and possible generalizations beyond it and also for other spinchains are further discussed.
我们用有限时间路径场理论的微扰方法讨论了以下自旋链中的局部磁场淬火问题:在横向磁场中的 Ising 和 XY 自旋链。它们的共同特点是:i) 通过映射到二次量子化的非相互作用费米子问题,它们是可积分的;ii) 当基态是非能态时(除特殊情况外,有限自旋链都是如此),它可以表示为波哥留布夫费米子真空。如果在有限时间内切换局部磁场扰动,问题就变得不可解,必须通过数值或扰动方法来解决。利用基于投影函数维格纳变换的有限时间路径场理论的形式主义,我们展示了如何:i) 计算淬火链的洛斯赫密特回波中任何阶次扰动的基本 "气泡 "图;ii) 在 "气泡 "图中对铁离子两点迟滞函数的广义施文格-戴森方程进行求和,从而在一定的类比性假设条件下,在广泛的扰动强度范围内实现洛斯赫密特回波扰动展开的求和。我们还进一步讨论了假设的局限性、超越假设的概括以及对其他自旋链的可能概括。
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引用次数: 0
Dynamics and kinetic theory of hard spheres under strong confinement 强约束下硬球的动力学和动力学理论
Pub Date : 2024-09-05 DOI: arxiv-2409.03452
J. Javier Brey, M. I. García de Soria, P. Maynar
The kinetic theory description of a low density gas of hard spheres or disks,confined between two parallel plates separated a distance smaller than twicethe diameter of the particles, is addressed starting from the Liouvilleequation of the system. The associated BBGKY hierarchy of equations for thereduced distribution functions is expanded in powers of a parameter measuringthe density of the system in the appropriate dimensionless units. The Boltzmannlevel of description is obtained by keeping only the two lowest orders in theparameter. In particular, the one-particle distribution function obeys a coupleof equations. Contrary to what happens with a Boltzmann-like kinetic equationthat has been proposed for the same system on a heuristic basis, the kinetictheory formulated here admits stationary solutions that are consistent withequilibrium statistical mechanics, both in absence and presence of externalfields. In the latter case, the density profile is rather complex due to thecoupling between the inhomogeneities generated by the confinement and by theexternal fields. The general theory formulated provides a solid basis for thestudy of the properties of strongly confined dilute gases.
从系统的刘维尔方程出发,探讨了由硬球或硬盘组成的低密度气体的动力学理论描述,该气体被限制在两块平行板之间,两块板之间的距离小于粒子直径的两倍。以适当的无量纲单位测量系统密度的参数的幂来展开所引起的分布函数的相关 BBGKY 层次方程。通过只保留参数中的两个最低阶,就可以得到玻尔兹曼层次的描述。特别是,单粒子分布函数服从一对方程。与在启发式基础上为同一系统提出的类似于玻尔兹曼的动力学方程的情况相反,这里提出的动力学理论在没有和有外部场的情况下都能得到与平衡统计力学相一致的静态解。在后一种情况下,由于约束和外场产生的不均匀性之间的耦合,密度曲线相当复杂。所提出的一般理论为研究强约束稀释气体的性质提供了坚实的基础。
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引用次数: 0
An Efficient Enumeration of Flat-Foldings : Study on Random Single Vertex Origami 平面折纸的高效枚举:随机单顶点折纸研究
Pub Date : 2024-09-05 DOI: arxiv-2409.03240
Chihiro Nakajima
This paper deals with themes such as approximate counting/evaluation of thetotal number of flat-foldings for random origami diagrams, evaluation of thevalues averaged over various instances, obtaining forcing sets for generalorigami diagrams, and evaluation of average computational complexity. Anapproach to the above problems using a physical model and an efficient sizereduction method for them is proposed. Using a statistical mechanics model anda numerical method of approximate enumeration based on it, we give the resultof approximate enumeration of the total number of flat-foldings ofsingle-vertex origami diagram with random width of angles gathering around thecentral vertex, and obtain its size dependence for an asymptotic predictiontowards the limit of infinite size. In addition, an outlook with respect to thechained determination of local stacking orders of facets caused by theconstraint that prohibits the penetration of them is also provided from theviewpoint of organizing the terms included in the physical model. A method toefficiently solve the problem of the determination or enumeration offlat-foldings is discussed based on the above perspectives. This is thought tobe closely related to forcing sets.
本文讨论的主题包括:随机折纸图的平折总数的近似计算/评估、各种实例的平均值评估、一般折纸图的强制集的获得以及平均计算复杂度的评估。针对上述问题,提出了一种使用物理模型的方法和一种有效的减小尺寸的方法。利用统计力学模型和基于该模型的近似枚举数值方法,我们给出了单顶点折纸图的近似枚举结果,即在中心顶点周围聚集随机角宽度的平折总数,并获得了其大小依赖性,从而对无限大的极限进行了渐近预测。此外,还从组织物理模型所包含的术语的角度,展望了因禁止穿透的约束条件而导致的面的局部堆叠顺序的链式确定。基于上述观点,讨论了有效解决确定或枚举扁平折叠问题的方法。这被认为与强迫集密切相关。
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引用次数: 0
期刊
arXiv - PHYS - Statistical Mechanics
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