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Optimization and spectrum characterization of the antibacterial activity of lugdunin 菟丝子苷抗菌活性的优化及光谱表征
IF 3.6 3区 医学 Q1 MICROBIOLOGY Pub Date : 2025-09-20 DOI: 10.1016/j.ijmm.2025.151678
Cheng-Yen Kao , Nevia Longjam , Jazon Harl Hidrosollo , Lee-Chung Lin , Jang-Jih Lu
Staphylococcus lugdunensis, an emerging coagulase-negative Staphylococcus (CoNS) pathogen, has garnered increasing interest due to its production of lugdunin, a thiazolidine-containing antimicrobial peptide. However, standardized protocols for directly assessing lugdunin activity produced by S. lugdunensis remain lacking. In this study, we examined the effects of pH and incubation duration on lugdunin activity and evaluated the antibacterial spectrum of lugdunin produced by S. lugdunensis isolates against a panel of gram-positive and gram-negative bacterial strains. The optimal conditions for lugdunin antibacterial activity of isolate CGMH-SL85 were identified as pH 7.5 and a 72-h incubation period. Under the tested conditions, the lugdunin produced by CGMH-SL85 exhibited antimicrobial activity against five gram-positive strains, including Staphylococcus aureus ATCC29213 and Staphylococcus haemolyticus CGMH-SH53, followed by Enterococcus faecium EF029 and EF081–2 and Listeria monocytogenes ATCC10403S. However, no antibacterial activity was observed against any of the 11 tested gram-negative bacterial species. Furthermore, four distinct lugdunin susceptibility phenotypes were observed among 47 lugdunin-nonproducing S. lugdunensis strains (14 sequence type (ST)4, 27 ST27, and 6 ST29 strains), including Type A characterized by large, clear inhibition zones; Type B with smaller, clear zones; Type C displaying halo-like inhibition zones; and Type D showing no detectable activity. Moreover, 20 S. lugdunensis strains (42.6 %) exhibited the Type C phenotype. Notably, all six ST29 strains displayed the Type C phenotype, while the Type A phenotype was observed only among ST27 strains (3 strains). In conclusion, we developed a standardized protocol for evaluating lugdunin activity, using pH 7.5 and a 72-h incubation period, and found that different S. lugdunensis strains exhibited distinct lugdunin susceptibility phenotypes.
lugdunensis葡萄球菌是一种新兴的凝固酶阴性葡萄球菌(con)病原体,由于其产生lugdunin(一种含噻唑烷的抗菌肽)而引起越来越多的兴趣。然而,直接评估S. lugdunensis产生的lugdunin活性的标准化方案仍然缺乏。在这项研究中,我们检测了pH和孵育时间对lugdunensis活性的影响,并评估了S. lugdunensis分离物对一组革兰氏阳性和革兰氏阴性菌株产生的lugdunin的抗菌谱。菌株CGMH-SL85的最佳抑菌条件为pH 7.5,孵育72 h。在实验条件下,CGMH-SL85生产的lugdunin对5种革兰氏阳性菌株有抗菌活性,分别是金黄色葡萄球菌ATCC29213和溶血葡萄球菌CGMH-SH53,其次是屎肠球菌EF029和EF081-2以及单核增生李斯特菌ATCC10403S。然而,对11种革兰氏阴性细菌均无抗菌活性。此外,在47株不产生lugdunin的菌株(14株序列型(ST)4、27株序列型(ST27)和6株序列型(ST29))中观察到4种不同的lugdunin敏感性表型,其中A型具有大而清晰的抑制区;B型具有较小的、清晰的区域;C型表现为晕状抑制带;D型没有可检测到的活性。20株lugdunensis(42.6 %)呈现C型表型。值得注意的是,6株ST29菌株均表现为C型表型,而只有ST27菌株(3株)表现为A型表型。总之,我们制定了一个标准化的方案来评估lugdunin的活性,使用pH 7.5和72小时的潜伏期,发现不同的S. lugdunensis菌株表现出不同的lugdunin敏感性表型。
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引用次数: 0
Genomic analyses of enteroinvasive Escherichia coli revealed the circulation of conjugative virulence plasmids and emergence of novel clones 肠道侵入性大肠杆菌的基因组分析揭示了共轭毒力质粒的循环和新克隆的出现
IF 3.6 3区 医学 Q1 MICROBIOLOGY Pub Date : 2025-09-20 DOI: 10.1016/j.ijmm.2025.151677
Kazuhisa Okada , Warawan Wongboot , Amonrattana Roobthaisong , Nonzee Hanchanachai , Pawinee Doung-ngern , Pilailuk Akkapaiboon Okada , Thanee Wongchai , Witaya Swaddiwudhipong , Tetsuya Iida , Shigeyuki Hamada
Enteroinvasive Escherichia coli (EIEC) is a diarrhoeagenic E. coli pathotype that shares key virulence traits with Shigella, including the invasion plasmid (pINV). In Thailand, an outbreak caused by the EIEC serotype O8:H19—the first reported in the country—occurred in 2023, affecting over 150 patients. To elucidate the emergence, clinical relevance, and epidemiological distribution of EIEC in Thailand, we conducted a comprehensive investigation. We isolated and genomically characterised 63 isolates, comprising 28 EIEC (eight serotypes, including O96:H19 from a 2024 outbreak) and 35 Shigella (25 S. sonnei and 10 S. flexneri), along with 85 global reference strains. Comparative genomics revealed that the 2023 and 2024 EIEC outbreak isolates, along with a novel OX18:H25 EIEC lineage, harboured highly similar pINV plasmids with conserved invasion genes and complete conjugation elements. These isolates retained several biochemical traits that were more typical of commensal E. coli than classical EIEC. Limited chromosomal genome reduction—a hallmark of Shigella— was observed, which suggests that these lineages are in an early stage of adaptation toward a pathogenic lifestyle. Phylogenomic analysis showed that OX18:H25 is closely related to livestock-associated E. coli, supporting the hypothesis that pINV was recently acquired via horizontal gene transfer. These findings highlight the active circulation of putatively conjugative virulence plasmids among E. coli populations and the ongoing emergence of novel EIEC clones with epidemic-inducing potential.
肠侵入性大肠杆菌(EIEC)是一种腹泻致病性大肠杆菌,与志贺氏菌(Shigella)具有相同的关键毒力特征,包括入侵质粒(pINV)。在泰国,由EIEC血清型O8: h19引起的疫情于2023年发生,影响了150多名患者,这是该国首次报告的疫情。为了阐明EIEC在泰国的出现、临床相关性和流行病学分布,我们进行了全面的调查。我们分离并鉴定了63株分离株,包括28株EIEC(8种血清型,包括来自2024年暴发的O96:H19)和35株志贺氏菌(25株sonnei和10株flexneri),以及85株全球参考菌株。比较基因组学显示,2023年和2024年爆发的EIEC分离株,以及新的OX18:H25 EIEC谱系,具有高度相似的pINV质粒,具有保守的入侵基因和完整的偶联元件。这些分离株保留了比经典EIEC更典型的共生大肠杆菌的几种生化特性。有限的染色体基因组减少——志贺氏菌的一个标志——被观察到,这表明这些谱系处于适应致病性生活方式的早期阶段。系统基因组分析显示,OX18:H25与家畜相关的大肠杆菌密切相关,支持了pINV是最近通过水平基因转移获得的假设。这些发现强调了假定的共轭毒力质粒在大肠杆菌群体中的活跃循环,以及具有诱导流行潜力的新型EIEC克隆的不断出现。
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引用次数: 0
Genomic insights into pyrazinamide and fluoroquinolone resistance in multidrug-resistant tuberculosis in Khyber Pakhtunkhwa, Pakistan 巴基斯坦开伯尔-普赫图赫瓦省多药耐药结核病中吡嗪酰胺和氟喹诺酮类药物耐药性的基因组分析。
IF 3.6 3区 医学 Q1 MICROBIOLOGY Pub Date : 2025-09-16 DOI: 10.1016/j.ijmm.2025.151674
Zia Ud Din , Farman Ullah , Anwar Sheed Khan , Sajjad Ahmad , Azra , Aiman Waheed , Noor Muhmmad , Fawad Ali , Farhad Ali Khattak , Gulab Fatima Rani , Otavio Cabral-Marques , Ihtisham Ul Haq , Muhammad Riaz , Jody E. Phelan , Susana Campino , Taj Ali Khan , Taane G. Clark

Background

Tuberculosis (TB), caused by bacteria of the Mycobacterium tuberculosis complex (MTBC), remains a global health challenge, exacerbated by multidrug-resistant (MDR) and extensively drug-resistant (XDR) strains.

Objectives

This study employs whole-genome sequencing (WGS) to characterise genetic mutations associated with pyrazinamide (PZA) and fluoroquinolone (FQ) resistance in MDR-TB isolates from KPK.

Methodology

MDR and pre-XDR TB samples were collected and processed at the Provincial Tuberculosis Reference Laboratory under Biosafety Level III conditions. Samples underwent microscopy, GeneXpert MTB/RIF assay, culture, and drug susceptibility testing. DNA was extracted from positive cultures and subjected to WGS. Bioinformatics tools were used to analyse sequencing data, identify resistance-associated mutations, and assess genetic diversity among isolates.

Results

Out of the 78 MTBC isolates analysed, 67 (85.9 %) were identified as MDR-TB, with 48 categorized as pre-XDR, while 11 were drug-susceptible. The isolates predominantly came from young patients (mean age: 29.5 years, SD ±12.64), with a higher proportion of female patients (61.53 %). Mutations in the pncA gene, associated with PZA resistance, were identified in 51 isolates. Resistance to fluoroquinolones was linked to mutations in the gyrA and gyrB genes in 48 isolates. WGS confirmed PZA resistance in 51 isolates, 39 (76.47 %) of which also exhibited FQ resistance.

Conclusion

Phylogenetic analysis revealed that Lineage 3 (L3) was predominant (58.97 %), followed by L4, L2, and L1 strains. The clustering of drug-resistant strains within L3 suggests ongoing localized transmission. These findings underscore the urgent need for targeted interventions, including enhanced molecular surveillance and tailored treatment strategies, to combat MDR-TB in KPK.
背景:由结核分枝杆菌复合体(MTBC)细菌引起的结核病(TB)仍然是全球健康挑战,多重耐药(MDR)和广泛耐药(XDR)菌株加剧了结核病的威胁。目的:本研究采用全基因组测序(WGS)来表征KPK耐多药结核分离株中与吡嗪酰胺(PZA)和氟喹诺酮(FQ)耐药相关的基因突变。方法:在生物安全三级条件下,在省结核病参考实验室收集耐多药和广泛耐药前结核样本并进行处理。样品进行显微镜检查、GeneXpert MTB/RIF检测、培养和药敏试验。从阳性培养物中提取DNA并进行WGS。使用生物信息学工具分析测序数据,鉴定耐药性相关突变,并评估分离株之间的遗传多样性。结果:在分析的78株MTBC分离株中,67株(85.9 %)被确定为耐多药结核病,48株被归类为前xdr, 11株对药物敏感。分离株主要来自年轻患者(平均年龄29.5岁,SD±12.64),女性患者比例较高(61.53 %)。在51株分离株中发现了与PZA耐药相关的pncA基因突变。对氟喹诺酮类药物的耐药性与48个分离株中gyrA和gyrB基因的突变有关。WGS证实51株PZA耐药,其中39株(76.47 %)对FQ耐药。结论:系统发育分析显示,谱系3 (L3)占优势(58.97 %),其次是L4、L2和L1菌株。L3内耐药菌株的聚集表明正在进行局部传播。这些发现强调迫切需要有针对性的干预措施,包括加强分子监测和量身定制的治疗策略,以在KPK对抗耐多药结核病。
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引用次数: 0
Multiple isolation of ST398/t011 MRSA from patients in the first half of 2025 in Imam Reza Hospital, Bojnurd, North Eastern Iran 伊朗东北部Bojnurd伊玛目礼萨医院2025年上半年从患者身上多次分离到ST398/t011 MRSA
IF 3.6 3区 医学 Q1 MICROBIOLOGY Pub Date : 2025-09-06 DOI: 10.1016/j.ijmm.2025.151672
Ebrahim Golmakani , Roya Sadidi , Seyed Ahmad Hashemi , Ali Haghbin , Amir Azimian

Introduction

Methicillin-resistant Staphylococcus aureus (MRSA) remains a global health threat, with livestock-associated (LA-)MRSA ST398/t011 emerging in regions with human-animal contact. This study reports the first detection of ST398/t011 in clinical isolates from Bojnurd, northeastern Iran, alongside the hospital-associated ST239/t037 clone.

Methods

From January to April 2025, 242 clinical samples from Imam Reza Hospital were screened for S. aureus. MRSA isolates underwent antimicrobial susceptibility testing (CLSI M100-2023) and molecular characterization (mecA, mecC, vanA, cfr, PVL, tsst, sec, hla; SCCmec, agr, spa typing, MLST).

Results

Of 32 positive cultures, 7 MRSA isolates were identified (ST398/t011 [n = 4]; ST239/t037 [n = 3]). All harbored mecA and exhibited resistance to β-lactams, clindamycin, and gentamicin but remained susceptible to vancomycin/linezolid. The PVL gene was detected in one ST398/t011 isolate. ST398/t011 carried SCCmec V and agr I, while ST239/t037 had SCCmec III. Isolates were recovered from wound (n = 3), blood (n = 2), eye (n = 1), and urine (n = 1) samples, with patients aged 6–48 years.

Discussion

This first report of LA-MRSA ST398/t011 in northeastern Iran highlights potential zoonotic transmission risks in this agricultural region. Co-detection of PVL in ST398/t011 and multidrug-resistant ST239/t037 underscores the need for enhanced surveillance. Limitations include the small sample size, but findings warrant further One Health investigations to assess reservoirs and transmission dynamics.
耐甲氧西林金黄色葡萄球菌(MRSA)仍然是全球健康威胁,牲畜相关(LA-)MRSA ST398/t011出现在人与动物接触的地区。本研究报告了首次在伊朗东北部Bojnurd的临床分离株中检测到ST398/t011,以及与医院相关的ST239/t037克隆。方法于2025年1 - 4月对伊玛目礼萨医院242份临床样本进行金黄色葡萄球菌筛查。对分离的MRSA进行了药敏试验(CLSI M100-2023)和分子鉴定(mecA、mecC、vanA、cfr、PVL、tsst、sec、hla; SCCmec、agr、spa分型、MLST)。结果32株阳性培养物中,鉴定出7株MRSA (ST398/t011 [n = 4];ST239/t037 [n = 3])。所有细菌都携带mecA,并对β-内酰胺类、克林霉素和庆大霉素耐药,但对万古霉素/利奈唑胺敏感。在1株ST398/t011分离株中检测到PVL基因。ST398/t011携带SCCmec V和agr I,而ST239/t037携带SCCmec III。分离株分别来自伤口(n = 3)、血液(n = 2)、眼睛(n = 1)和尿液(n = 1),患者年龄6 ~ 48岁。伊朗东北部首次报告的LA-MRSA ST398/t011突出了该农业地区潜在的人畜共患病传播风险。在ST398/t011和耐多药ST239/t037中共同检测PVL,强调了加强监测的必要性。局限性包括样本量小,但研究结果值得One Health进一步调查,以评估水库和传播动态。
{"title":"Multiple isolation of ST398/t011 MRSA from patients in the first half of 2025 in Imam Reza Hospital, Bojnurd, North Eastern Iran","authors":"Ebrahim Golmakani ,&nbsp;Roya Sadidi ,&nbsp;Seyed Ahmad Hashemi ,&nbsp;Ali Haghbin ,&nbsp;Amir Azimian","doi":"10.1016/j.ijmm.2025.151672","DOIUrl":"10.1016/j.ijmm.2025.151672","url":null,"abstract":"<div><h3>Introduction</h3><div>Methicillin-resistant <em>Staphylococcus aureus</em> (MRSA) remains a global health threat, with livestock-associated (LA-)MRSA ST398/t011 emerging in regions with human-animal contact. This study reports the first detection of ST398/t011 in clinical isolates from Bojnurd, northeastern Iran, alongside the hospital-associated ST239/t037 clone.</div></div><div><h3>Methods</h3><div>From January to April 2025, 242 clinical samples from Imam Reza Hospital were screened for <em>S. aureus</em>. MRSA isolates underwent antimicrobial susceptibility testing (CLSI M100-2023) and molecular characterization (<em>mecA</em>, <em>mecC</em>, <em>vanA</em>, <em>cfr</em>, <em>PVL</em>, <em>tsst</em>, <em>sec</em>, <em>hla</em>; SCC<em>mec</em>, <em>agr</em>, <em>spa</em> typing, MLST).</div></div><div><h3>Results</h3><div>Of 32 positive cultures, 7 MRSA isolates were identified (ST398/t011 [n = 4]; ST239/t037 [n = 3]). All harbored <em>mecA</em> and exhibited resistance to β-lactams, clindamycin, and gentamicin but remained susceptible to vancomycin/linezolid. The <em>PVL</em> gene was detected in one ST398/t011 isolate. ST398/t011 carried SCC<em>mec</em> V and <em>agr</em> I, while ST239/t037 had SCC<em>mec</em> III. Isolates were recovered from wound (n = 3), blood (n = 2), eye (n = 1), and urine (n = 1) samples, with patients aged 6–48 years.</div></div><div><h3>Discussion</h3><div>This first report of LA-MRSA ST398/t011 in northeastern Iran highlights potential zoonotic transmission risks in this agricultural region. Co-detection of <em>PVL</em> in ST398/t011 and multidrug-resistant ST239/t037 underscores the need for enhanced surveillance. Limitations include the small sample size, but findings warrant further One Health investigations to assess reservoirs and transmission dynamics.</div></div>","PeriodicalId":50312,"journal":{"name":"International Journal of Medical Microbiology","volume":"321 ","pages":"Article 151672"},"PeriodicalIF":3.6,"publicationDate":"2025-09-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145027810","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
SARS-CoV-2 nucleocapsid protein delays cell cycle in S-phase SARS-CoV-2核衣壳蛋白延缓s期细胞周期
IF 3.6 3区 医学 Q1 MICROBIOLOGY Pub Date : 2025-09-01 DOI: 10.1016/j.ijmm.2025.151671
Jinming Liu , Mengyu Liu , Xiaoyan Yu , Pei-Hui Wang , Xue Guan , Wenbo Huo , Jing Zhang , Minna Cui , Xinhua Li , Xinhe Zhou , Siyu Liu , Cong Wang , Changrui Huang , Jinghua Yu
The emergence of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) as the causative agent of COVID-19 precipitated a global health crisis of unprecedented scale. SARS-CoV-2 has been shown to interfere specifically with S phase progression during early stages of infection. Nucleocapsid (N) is an important structural protein. The abundance and early presence of N suggest that the N protein may play a pivotal role in determining the fate of host cells post-infection, including in cell cycle regulation. Our observations reveal that the SARS-CoV-2 N protein actually induces S phase arrest by promoting S phase entry and simultaneously blocking exit from this phase, which is different from previous report G1/S blockage, others describe G1 and G2/M arrest. Prolonged cell cycle arrest is frequently linked to cell death, while our data suggests the N protein curtails cell proliferation, slowing down cell growth without actively triggering cell death. Intriguingly, removing the N-arm, SR-rich region, CTD, or C-tail each abolishes the N protein’s ability to suppress cell growth, whereas deletion of the NTD does not impact this capability, nor does it affect S phase arrest. All told, the SARS-CoV-2 N protein emerges as a multifunctional actor, not only driving key aspects of viral replication but also exerting significant effects on host cell physiology by modulating cell cycle progression and growth.
作为COVID-19病原体的严重急性呼吸综合征冠状病毒2型(SARS-CoV-2)的出现引发了前所未有的全球卫生危机。已证明SARS-CoV-2在感染的早期阶段特异性地干扰S期进展。核衣壳(N)是一种重要的结构蛋白。N的丰度和早期存在表明N蛋白可能在决定宿主细胞感染后的命运中起关键作用,包括细胞周期调节。我们的观察结果表明,SARS-CoV-2 N蛋白实际上是通过促进S期进入并同时阻断S期退出来诱导S期阻滞,这与以往报道的G1/S阻滞不同,其他报道描述的是G1和G2/M阻滞。细胞周期阻滞延长通常与细胞死亡有关,而我们的数据表明,N蛋白会抑制细胞增殖,减缓细胞生长,而不会主动触发细胞死亡。有趣的是,去除N臂、富sr区、CTD或c尾都会消除N蛋白抑制细胞生长的能力,而删除NTD不会影响这种能力,也不会影响S期阻滞。总而言之,sars - cov - 2n蛋白作为一个多功能参与者出现,不仅驱动病毒复制的关键方面,还通过调节细胞周期进程和生长对宿主细胞生理产生重大影响。
{"title":"SARS-CoV-2 nucleocapsid protein delays cell cycle in S-phase","authors":"Jinming Liu ,&nbsp;Mengyu Liu ,&nbsp;Xiaoyan Yu ,&nbsp;Pei-Hui Wang ,&nbsp;Xue Guan ,&nbsp;Wenbo Huo ,&nbsp;Jing Zhang ,&nbsp;Minna Cui ,&nbsp;Xinhua Li ,&nbsp;Xinhe Zhou ,&nbsp;Siyu Liu ,&nbsp;Cong Wang ,&nbsp;Changrui Huang ,&nbsp;Jinghua Yu","doi":"10.1016/j.ijmm.2025.151671","DOIUrl":"10.1016/j.ijmm.2025.151671","url":null,"abstract":"<div><div>The emergence of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) as the causative agent of COVID-19 precipitated a global health crisis of unprecedented scale. SARS-CoV-2 has been shown to interfere specifically with S phase progression during early stages of infection. Nucleocapsid (N) is an important structural protein. The abundance and early presence of N suggest that the N protein may play a pivotal role in determining the fate of host cells post-infection, including in cell cycle regulation. Our observations reveal that the SARS-CoV-2 N protein actually induces S phase arrest by promoting S phase entry and simultaneously blocking exit from this phase, which is different from previous report G1/S blockage, others describe G1 and G2/M arrest. Prolonged cell cycle arrest is frequently linked to cell death, while our data suggests the N protein curtails cell proliferation, slowing down cell growth without actively triggering cell death. Intriguingly, removing the N-arm, SR-rich region, CTD, or C-tail each abolishes the N protein’s ability to suppress cell growth, whereas deletion of the NTD does not impact this capability, nor does it affect S phase arrest. All told, the SARS-CoV-2 N protein emerges as a multifunctional actor, not only driving key aspects of viral replication but also exerting significant effects on host cell physiology by modulating cell cycle progression and growth.</div></div>","PeriodicalId":50312,"journal":{"name":"International Journal of Medical Microbiology","volume":"320 ","pages":"Article 151671"},"PeriodicalIF":3.6,"publicationDate":"2025-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144996347","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Imipenem-induced outer membrane vesicles from Elizabethkingia anophelis inhibit biofilm formation and shift nosocomial pathogen dynamics 亚胺培南诱导的依蚊外膜囊泡抑制生物膜形成并改变医院病原体动态
IF 3.6 3区 医学 Q1 MICROBIOLOGY Pub Date : 2025-08-23 DOI: 10.1016/j.ijmm.2025.151670
Yuan-Ming Tsai , Ching-Ming Liu , Hsiao-Chun Chen , Tsung-Hsuan Yang , Pang-Shuo Huang , Yu-Lin Hsu , Manoj Baranwal , Ming-Hsien Chiang
Elizabethkingia anophelis is an emerging multidrug-resistant Gram-negative pathogen that can cause severe nosocomial infections. Although multidrug resistance complicates the clinical management of E. anophelis, the ecological impact of stress responses, including antibiotic pressure, is unclear. We demonstrated that exposure to sub-inhibitory concentrations of imipenem promoted the secretion of antibiotic-induced outer membrane vesicles (iOMVs) by E. anophelis. This study analyzed the physical and functional characteristics of iOMVs produced by a drug-resistant clinical isolate of E. anophelis treated with imipenem and assessed the potential of E. anophelis iOMVs to modulate biofilm formation in other clinically relevant Gram-negative bacteria. High-resolution imaging and biofilm assays showed that iOMVs inhibited biofilm formation and reduced biofilm density. The inhibitory effect did not affect other nosocomial pathogens such as Pseudomonas aeruginosa, Enterobacter cloacae, or Klebsiella pneumoniae. Imipenem-induced vesiculation may inadvertently impair E. anophelis’ biofilm resilience while altering microbial competition, reshaping survival dynamics in polymicrobial environments. These results demonstrate the paradoxical effect of antibiotic stress and suggest that vesicle-mediated interactions strongly affect nosocomial pathogen ecology.
伊莉莎白按蚊是一种新兴的多重耐药革兰氏阴性病原体,可引起严重的医院感染。尽管多药耐药使按蚊的临床管理复杂化,但应激反应(包括抗生素压力)的生态影响尚不清楚。我们证明暴露于亚胺培南的亚抑制浓度促进了按蚊抗生素诱导的外膜囊泡(iOMVs)的分泌。本研究分析了经亚胺培南处理的耐药按蚊临床分离株产生的iomv的物理和功能特征,并评估了按蚊iomv调节其他临床相关革兰氏阴性菌生物膜形成的潜力。高分辨率成像和生物膜分析显示,iomv抑制生物膜的形成,降低生物膜密度。抑制效果不影响其他医院内的病原体,如铜绿假单胞菌、阴沟肠杆菌或肺炎克雷伯菌。亚胺培南诱导的囊泡可能无意中损害了按蚊的生物膜弹性,同时改变了微生物的竞争,重塑了多微生物环境中的生存动态。这些结果证明了抗生素应激的矛盾效应,并表明囊泡介导的相互作用强烈影响医院病原体生态。
{"title":"Imipenem-induced outer membrane vesicles from Elizabethkingia anophelis inhibit biofilm formation and shift nosocomial pathogen dynamics","authors":"Yuan-Ming Tsai ,&nbsp;Ching-Ming Liu ,&nbsp;Hsiao-Chun Chen ,&nbsp;Tsung-Hsuan Yang ,&nbsp;Pang-Shuo Huang ,&nbsp;Yu-Lin Hsu ,&nbsp;Manoj Baranwal ,&nbsp;Ming-Hsien Chiang","doi":"10.1016/j.ijmm.2025.151670","DOIUrl":"10.1016/j.ijmm.2025.151670","url":null,"abstract":"<div><div><em>Elizabethkingia anophelis</em> is an emerging multidrug-resistant Gram-negative pathogen that can cause severe nosocomial infections. Although multidrug resistance complicates the clinical management of <em>E. anophelis</em>, the ecological impact of stress responses, including antibiotic pressure, is unclear. We demonstrated that exposure to sub-inhibitory concentrations of imipenem promoted the secretion of antibiotic-induced outer membrane vesicles (iOMVs) by <em>E. anophelis</em>. This study analyzed the physical and functional characteristics of iOMVs produced by a drug-resistant clinical isolate of <em>E. anophelis</em> treated with imipenem and assessed the potential of <em>E. anophelis</em> iOMVs to modulate biofilm formation in other clinically relevant Gram-negative bacteria. High-resolution imaging and biofilm assays showed that iOMVs inhibited biofilm formation and reduced biofilm density. The inhibitory effect did not affect other nosocomial pathogens such as <em>Pseudomonas aeruginosa</em>, <em>Enterobacter cloacae</em>, or <em>Klebsiella pneumoniae</em>. Imipenem-induced vesiculation may inadvertently impair <em>E. anophelis</em>’ biofilm resilience while altering microbial competition, reshaping survival dynamics in polymicrobial environments. These results demonstrate the paradoxical effect of antibiotic stress and suggest that vesicle-mediated interactions strongly affect nosocomial pathogen ecology.</div></div>","PeriodicalId":50312,"journal":{"name":"International Journal of Medical Microbiology","volume":"320 ","pages":"Article 151670"},"PeriodicalIF":3.6,"publicationDate":"2025-08-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144907269","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification of blaESBL- and blaCARBA- Positive Multi-Drug Resistant Mixta calida Isolates from Distinct Human Hosts blaESBL-和blaCARBA-阳性多重耐药混合菌株的鉴定
IF 3.6 3区 医学 Q1 MICROBIOLOGY Pub Date : 2025-08-08 DOI: 10.1016/j.ijmm.2025.151669
Francesca McDonagh , Kate Ryan , Aneta Kovářová , Anna Tumeo , Christina Clarke , Martin Cormican , Georgios Miliotis

Objective

This study aimed to investigate the identification of blaCARBA-positive multidrug-resistant Mixta calida isolates from human hosts and to elucidate their genomic determinants in a species-wide context.

Methods

Two carbapenemase-producing M. calida isolates were received by the Galway Reference Laboratory Service in Ireland between June and July 2024. One isolate originated from a sputum sample, while the other was recovered from a routine screening rectal swab. Initial identification was performed using MALDI-ToF mass spectrometry, with genomic confirmation via 16S rRNA sequencing, digital DNA-DNA hybridization, and Average Nucleotide Identity analysis. Antimicrobial susceptibility testing was conducted using a MicroScan panel, following EUCAST and CLSI guidelines. Whole-genome sequencing, plasmid replicon typing, and antibiotic-resistance-gene and virulence-factor profiling were employed. Comparative analysis included all additional canonical M. calida genomes from NCBI database.

Results

Both Irish isolates were taxonomically placed as M. calida and exhibited multidrug resistance against penicillins, cephalosporins, monobactams and ertapenem. The acquired genes blaKPC-3, blaOXA-9, and blaTEM-122 were detected on plasmid-borne contigs, indicating horizontal acquisition. Seven plasmid replicon types were shared between the two isolates. Both plasmid replicons and acquired antimicrobial-resistance-genes (ARGs) were seldomly identified across the species. Phylogenetic inference based on core genome analysis identified a monophyletic cluster, suggesting a single introductory event.

Conclusion

This study documents a dual occurrence of blaCARBA-positive M. calida in human colonisation and infection. The findings highlight the potential for horizontal-gene-transfer to drive the emergence of multidrug-resistant profiles in the species, underscoring the need for enhanced surveillance, diagnostic precision, and targeted infection control strategies to mitigate public health risks.

Impact statement

This study reports blaESBL and blaCARBA-positive multi-drug resistant Mixta calida isolates from distinct human hosts. Genomic analysis revealed the co-occurrence of plasmid-borne resistance genes blaKPC-3, blaOXA-9, and blaTEM-122. Species-wide phylogenetic analysis grouped the two isolates into a monophyletic cluster, suggesting a single introductory event.
目的研究从人类宿主中分离出的blacarba阳性多药耐药calmixta菌株的鉴定,并在全物种范围内阐明其基因组决定因素。方法于2024年6 - 7月在爱尔兰戈尔韦参考实验室接收2株产碳青霉烯酶的卡利达分枝杆菌。一种分离株来自痰样本,另一种来自常规筛查直肠拭子。使用MALDI-ToF质谱进行初步鉴定,通过16S rRNA测序、数字DNA-DNA杂交和平均核苷酸鉴定分析进行基因组鉴定。根据EUCAST和CLSI指南,使用MicroScan面板进行抗菌药敏试验。采用全基因组测序、质粒复制子分型、抗生素耐药基因和毒力因子分析。比较分析包括NCBI数据库中所有额外的典型calida基因组。结果两株爱尔兰分离菌均为卡利达分枝杆菌,对青霉素类、头孢菌素类、单巴坦类和厄他培南均表现出多重耐药。在质粒载体上检测到获得基因blaKPC-3、blaxa -9和blaem -122,表明是水平获得的。两株菌株共有7种质粒复制子类型。质粒复制子和获得性抗菌素耐药基因(ARGs)在整个物种中很少被发现。基于核心基因组分析的系统发育推断确定了一个单系集群,表明一个单一的引入事件。结论黑卡巴阳性calida在人类定殖和感染中双重发生。这一发现强调了水平基因转移在该物种中推动多药耐药谱出现的潜力,强调了加强监测、诊断精度和有针对性的感染控制策略以减轻公共卫生风险的必要性。本研究报道了从不同人类宿主中分离出的blaESBL和blacarba阳性多重耐药calida混合菌。基因组分析显示,质粒携带的耐药基因blaKPC-3、blaxa -9和blaem -122同时存在。全种系统发育分析将这两个分离物归为单系群,表明这是一个单一的引入事件。
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引用次数: 0
Isolation and characterization of two novel oral bacteriophages with anti-biofilm activity against Cutibacterium acnes 两种具有抗痤疮表皮杆菌生物膜活性的新型口服噬菌体的分离与鉴定
IF 3.6 3区 医学 Q1 MICROBIOLOGY Pub Date : 2025-08-07 DOI: 10.1016/j.ijmm.2025.151668
Anja Frantar , Katja Seme , Rok Gašperšič , Čedomir Oblak , Katja Šuster
Bacteriophage therapy offers a promising solution to combat antibiotic-resistant infections, yet its potential against biofilm-associated pathogens in oral diseases remains underexplored. This study investigates the opportunistic bacterium Cutibacterium acnes, an overlooked contributor to dental implant and prosthetic joint infections. Biofilms formed by C. acnes are highly resilient and resistant to antibiotics, complicating treatment. Two novel lytic bacteriophages, Ristretto and Corretto, targeting C. acnes, were isolated from human saliva, with morphological analysis confirming their classification as siphoviruses. Their genome sequencing revealed no harmful antimicrobial resistance or virulence genes, making them suitable for therapeutic use. Remarkably, phage Corretto demonstrated a broad host range and achieved near-complete eradication of mature biofilms across multiple C. acnes strains, outperforming Ristretto in efficacy and strain coverage. The activity of these phages was dosage-dependent and varied across bacterial strains, revealing potential strain-specific resistance mechanisms within biofilms. These findings highlight bacteriophage therapy's potential to disrupt persistent biofilms where antibiotics fail, offering a new approach for treating biofilm-driven infections in dental and medical implantology. This study underscores the need for further research into phage-based strategies to address the growing global challenge of antimicrobial resistance and improve outcomes in biofilm-related diseases.
噬菌体治疗为对抗抗生素耐药感染提供了一个有希望的解决方案,但其在口腔疾病中对抗生物膜相关病原体的潜力仍未得到充分探索。本研究调查机会性细菌痤疮角质杆菌,一个被忽视的贡献者牙种植体和假体关节感染。由痤疮C.形成的生物膜具有高度的弹性和对抗生素的耐药性,使治疗复杂化。从人唾液中分离到两种新的靶向痤疮C.的裂解噬菌体Ristretto和Corretto,形态学分析证实它们属于虹膜病毒。它们的基因组测序显示没有有害的抗菌素耐药性或毒力基因,使它们适合用于治疗。值得注意的是,噬菌体Corretto表现出广泛的宿主范围,并几乎完全根除了多种痤疮C.菌株的成熟生物膜,在功效和菌株覆盖方面优于Ristretto。这些噬菌体的活性是剂量依赖性的,并在不同的细菌菌株之间变化,揭示了生物膜内潜在的菌株特异性耐药机制。这些发现强调了噬菌体疗法在抗生素失效的地方破坏持久性生物膜的潜力,为治疗牙科和医学种植学中生物膜驱动感染提供了一种新方法。这项研究强调需要进一步研究基于噬菌体的策略,以应对日益严重的全球抗菌素耐药性挑战,并改善生物膜相关疾病的预后。
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引用次数: 0
Symptomatic Mycoplasma genitalium infections in men who have sex with men and trans women: Should we skip macrolides? 男男性行为者和变性女性的症状性生殖器支原体感染:我们应该跳过大环内酯类药物吗?
IF 3.6 3区 医学 Q1 MICROBIOLOGY Pub Date : 2025-07-25 DOI: 10.1016/j.ijmm.2025.151667
Laura Horvath , Paula Juan , Xènia Lorente , Irene Fuertes de Vega , Nuria Golf , Andrea Vergara , Nicolás de Loredo , David García-Fernández , Francisco Montoya , Guillermo del Carlo , José Luís Blanco , Mateu Espasa , Berta Fidalgo

Background

Mycoplasma genitalium is an emerging sexually transmitted infection (STI) with increasing antimicrobial resistance, particularly among men who have sex with men (MSM). This study aimed to evaluate the incidence, clinical characteristics, and antibiotic resistance patterns of M. genitalium among symptomatic MSM and transgender women (TGW) attending a specialized STI clinic in Barcelona, Spain.

Methods

A retrospective observational study was conducted between January and December 2024. Symptomatic MSM and TGW patients diagnosed with M. genitalium through nucleic acid amplification testing (NAAT) were included. Macrolide and fluoroquinolone resistance mutations were detected using real-time PCR assays. Patients were treated according to European guidelines, with resistance-guided therapy.

Results

Among 71 patients with M. genitalium infection, 53.5 % presented with urethritis and 42.3 % with proctitis. Coinfection with other STIs was detected in 35 %, and 29.5 % had a history of recent STI. Alarmingly, 85.9 % of patients carried azithromycin resistance-associated mutations, while 42.3 % showed dual resistance to azithromycin and moxifloxacin. A test of cure (TOC) was performed in 26 patients (36.6 %), with 23.1 % (6/26) of them remaining positive, mainly due to dual resistance. The remaining 45 patients were lost to follow-up, but no relapses were recorded in six months

Conclusions

The high prevalence of macrolide-resistant M. genitalium among MSM underscores the need for alternative first-line therapeutic strategies, particularly in settings with limited access to resistance testing. Further research is required to optimize treatment regimens and evaluate the cost-effectiveness of routine macrolide susceptibility testing in high-risk populations.
生殖支原体是一种新兴的性传播感染(STI),其抗菌素耐药性日益增强,特别是在男男性行为者(MSM)中。本研究旨在评估在西班牙巴塞罗那一家专门的性传播感染诊所就诊的有症状的MSM和变性妇女(TGW)中生殖器支原体的发病率、临床特征和抗生素耐药性模式。方法于2024年1 - 12月进行回顾性观察研究。纳入经核酸扩增试验(NAAT)诊断为生殖器支原体的有症状的MSM和TGW患者。实时荧光定量PCR检测大环内酯类和氟喹诺酮类耐药突变。患者根据欧洲指南进行耐药引导治疗。结果71例生殖道支原体感染患者中,53.5% %表现为尿道炎,42.3% %表现为直肠炎。35. %合并性传播感染,29.5 %有近期性传播感染史。令人担忧的是,85.9 %的患者携带阿奇霉素耐药相关突变,而42.3 %的患者对阿奇霉素和莫西沙星双重耐药。26例患者(36.6% %)进行了治愈试验(TOC),其中23.1% %(6/26)为阳性,主要原因是双耐药。其余45例患者没有随访,但在6个月内没有复发记录。结论MSM中大环内酯耐药生殖支原体的高发率强调了一线治疗策略的必要性,特别是在耐药检测有限的环境中。需要进一步的研究来优化治疗方案,并评估高风险人群常规大环内酯药敏试验的成本效益。
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引用次数: 0
Prevalence, characteristics and clinical features of hypervirulent Klebsiella pneumoniae in a German university hospital 德国某大学医院高致病性肺炎克雷伯菌的流行、特点及临床特征
IF 3.6 3区 医学 Q1 MICROBIOLOGY Pub Date : 2025-07-19 DOI: 10.1016/j.ijmm.2025.151662
Eyüp Doğan , Katharina Schaufler , Stefan E. Heiden , Christian Kohler , Melanie Langheinrich , Karsten Becker , Elias Eger , Evgeny A. Idelevich

Background

Infections caused by hypervirulent Klebsiella pneumoniae (hvKp) are often characterised by severe, metastatic and relapsing infections. Initially described in Asia, this pathotype has now expanded worldwide. Convergent strains combining hypervirulence with multidrug resistance additionally aggravate the situation. However, only sparse data are available on the occurrence of hvKp in European countries. Therefore, this study investigated the prevalence of hvKp in a tertiary medical centre in Germany.

Methods

K. pneumoniae isolates were prospectively collected from clinical specimens obtained at the University Medicine Greifswald from June 1st to August 31st, 2022. Only the first isolate from each patient was considered, while screening samples were excluded. All isolates were phenotypically characterised for virulence and subjected to whole genome sequencing (WGS).

Results

A total of 122 isolates were included, which ranged from largely antibiotic-susceptible to multidrug-resistant phenotypes, with only one isolate carrying a carbapenemase gene (blaOXA-181). Phenotypic assays showed heterogeneous results, with only one isolate demonstrating concomitant positivity in both the string test and mucoid-staining plate. WGS revealed 81 different sequence types, including high-risk clonal lineages. Four isolates carried typical genetic markers associated with hypervirulence and were largely antibiotic-susceptible. In the Galleria mellonella infection model, these four isolates showed higher larval mortality compared to two control carbapenem-resistant classical K. pneumoniae strains. Convergent strains were not found.

Conclusion

Our findings revealed that 3.3 % (4 out of 122) of isolates were classified as hvKp. This prevalence appears clinically relevant due to the notoriously aggressive course of infections caused by this pathotype.
高致病性肺炎克雷伯菌(hvKp)引起的感染通常以严重、转移性和复发性感染为特征。这种病型最初在亚洲发现,现在已扩展到世界各地。高毒力与多药耐药相结合的趋同菌株进一步加剧了这种情况。然而,关于hvKp在欧洲国家的发生只有稀疏的数据。因此,本研究调查了hvKp在德国三级医疗中心的流行情况。对2022年6月1日至8月31日在格赖夫斯瓦尔德大学医学院采集的临床标本中分离的肺炎菌进行前瞻性采集。只考虑每位患者的第一个分离株,而排除筛查样本。所有分离株均具有毒力表型特征,并进行了全基因组测序(WGS)。结果共检出122株分离株,表型从大部分抗生素敏感型到多药耐药型不等,仅有1株携带碳青霉烯酶基因(blaOXA-181)。表型分析显示异质性结果,只有一个分离株在串试验和粘液染色板中显示同时阳性。WGS显示了81种不同的序列类型,包括高危克隆谱系。四株分离株携带与高毒力相关的典型遗传标记,并且大部分对抗生素敏感。在mellonella感染模型中,这四种分离株的幼虫死亡率高于两种碳青霉烯耐药的典型肺炎克雷伯菌。未发现趋同菌株。结论122株分离株中有4株(3.3 %)为hvKp。由于这种病型引起的感染过程具有众所周知的侵袭性,这种患病率似乎与临床相关。
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引用次数: 0
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International Journal of Medical Microbiology
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