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E. coli Nissle 1917 improves gut microbiota composition and serum metabolites to counteract atherosclerosis via the homocitrulline/Caspase 1/NLRP3/GSDMD axis 大肠杆菌Nissle 1917改善肠道菌群组成和血清代谢物,通过同瓜氨酸/Caspase 1/NLRP3/GSDMD轴对抗动脉粥样硬化。
IF 4.5 3区 医学 Q1 MICROBIOLOGY Pub Date : 2024-12-26 DOI: 10.1016/j.ijmm.2024.151642
Huan Liu , Xiaofeng Ma , Xuefeng Yang , Sujun Xiao , Shao Ouyang , Zhihao Hu , Zhixiang Zhou , Zhisheng Jiang

Background

The probiotic E. coli Nissle 1917 (EcN) alleviates the progression of various diseases, including colitis and tumors. However, EcN has not been studied in atherosclerosis. The study investigated the effects of EcN on atherosclerosis model mice and the potential mechanisms.

Methods

Mice in the high-fat diet (HFD) model were given EcN (1 × 109 CFU/g) or homocitrulline (150 mg/L) by oral administration for 12 weeks. The EcN + antibiotic group was set up to investigate the effects of EcN combined with antibiotics on gut microbiota. The control group was utilized as the negative control. Atherosclerosis status, pyroptosis, gut microbiota, and serum metabolites of mice were examined.

Results

EcN treatment alleviated HFD-caused atherosclerotic plaque and lipid droplet production. EcN treatment reversed HFD-induced increases in total cholesterol, triglycerides, and low-density lipoprotein levels and decreases in high-density lipoprotein levels. EcN inhibited the HFD-caused rise in the expression of pyroptosis-related indicators (cleaved Caspase 1, GSDMD-N, NLRP3, IL-18, and IL-1β). The antibiotics partially reversed the effects of EcN on the model mice, suggesting that EcN regulated pyroptosis in the model mice through gut microbiota. Probiotic bacteria, such as Lactobacillus and Muribaculum, were mainly enriched in the EcN and EcN + antibiotic groups, while Helicobacter, Alistipes, and Rikenella were depleted, suggesting that EcN and EcN + antibiotics could alleviate disorders of gut microbiota in the model mice. EcN reversed the trend of HFD-induced decrease of some metabolites, such as 2-methyl-5-nitroimidazole-1-ethanol, methionine sulfoxide, and shikimate 3-phosphate, and inhibited the increase of some metabolites, such as kynurenine, oxoadipate, and homocitrulline. In addition, homocitrulline showed the opposite effects of EcN in the model mice. Homocitrulline could bind to pyroptosis-related proteins to aggravate ox-LDL-induced endothelial cell pyroptosis.

Conclusion

EcN could alleviate atherosclerosis development by ameliorating HFD-induced disorders of gut microbiota and serum metabolites (such as homocitrulline) to alleviate pyroptosis, which may be associated with homocitrulline/Caspase 1/NLRP3/GSDMD axis. Our study lays the foundation for the development of promising drugs for atherosclerosis in the future.
背景:益生菌大肠杆菌 Nissle 1917(EcN)可缓解各种疾病的恶化,包括结肠炎和肿瘤。然而,EcN尚未被研究用于动脉粥样硬化。本研究调查了 EcN 对动脉粥样硬化模型小鼠的影响及其潜在机制:方法:给高脂饮食(HFD)模型小鼠口服 EcN(1 × 109 CFU/g)或高瓜氨酸(150 mg/L),连续 12 周。EcN + 抗生素组旨在研究 EcN 与抗生素联合使用对肠道微生物群的影响。对照组作为阴性对照。对小鼠的动脉粥样硬化状况、脓毒血症、肠道微生物群和血清代谢物进行了检测:结果:EcN 治疗缓解了 HFD 引起的动脉粥样硬化斑块和脂滴的产生。EcN治疗逆转了HFD引起的总胆固醇、甘油三酯和低密度脂蛋白水平的升高以及高密度脂蛋白水平的降低。EcN抑制了HFD引起的热蛋白沉积相关指标(裂解Caspase 1、GSDMD-N、NLRP3、IL-18和IL-1β)表达的增加。抗生素部分逆转了EcN对模型小鼠的影响,表明EcN通过肠道微生物群调节模型小鼠的嗜热症。益生菌,如乳酸杆菌和穆里巴氏菌,主要在EcN组和EcN+抗生素组中富集,而螺旋杆菌、阿利司氏菌和利克菌则被清除,这表明EcN和EcN+抗生素可缓解模型小鼠肠道微生物群的紊乱。EcN逆转了HFD诱导的一些代谢物(如2-甲基-5-硝基咪唑-1-乙醇、甲硫氨酸亚砜和3-磷酸莽草酸)的减少趋势,并抑制了一些代谢物(如犬尿氨酸、氧代己二酸和高瓜氨酸)的增加。此外,高瓜氨酸在模型小鼠中的作用与 EcN 相反。高瓜氨酸可与热蛋白相关蛋白结合,从而加剧氧化-LDL诱导的内皮细胞热蛋白沉积:结论:EcN可通过改善HFD诱导的肠道微生物群紊乱和血清代谢物(如同型瓜氨酸)来缓解动脉粥样硬化的发展,这可能与同型瓜氨酸/Caspase 1/NLRP3/GSDMD轴有关。我们的研究为未来开发治疗动脉粥样硬化的药物奠定了基础。
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引用次数: 0
Signaling events driving Aspergillus fumigatus-induced eosinophil activation 驱动烟曲霉诱导的嗜酸性粒细胞激活的信号事件。
IF 4.5 3区 医学 Q1 MICROBIOLOGY Pub Date : 2024-12-19 DOI: 10.1016/j.ijmm.2024.151641
Jasmin Adam , Lisa-Marie Graf , Stefanie Westermann , David Voehringer , Sven Krappmann
Allergic bronchopulmonary aspergillosis is an incurable disease caused by the environmental mold Aspergillus fumigatus. This hypersensitivity pneumonia is characterized by an inflammatory type 2 immune response, accompanied by influx of eosinophils into the lung. To investigate the mode of action of eosinophils and the signaling events triggered by A. fumigatus, we used an in vitro coculture system of murine bone marrow-derived eosinophils confronted with conidia. Using small-molecule inhibitors, we identified signaling modules of eosinophils in the course of A. fumigatus confrontation. Eosinophils reduced fungal metabolic activity, but inhibition of relevant signaling modules did not affect this phenomenon upon eosinophil confrontation. A. fumigatus-induced secretion of Th2 cytokines and chemokines by eosinophils engaged proto-oncogene tyrosine-protein kinase Src, phosphatidylinositol 3-kinase, p38 mitogen-activated protein kinase as well as calcium cations and to some extent serine/threonine-protein kinase Akt and protein arginine deiminase 4. Src and PI3K kinases were also involved in A. fumigatus-mediated ROS production and regulation of eosinophils surface receptors. Especially Src and PI3K inhibitors prevented A. fumigatus-induced eosinophil activation. Taken together, identification of signaling cascades of eosinophils during their interaction with A. fumigatus provides relevant insights into the host-pathogen interaction in the context of ABPA to yield therapeutic perspectives.
过敏性支气管肺曲霉病是由环境霉菌烟曲霉引起的一种不治之症。这种超敏性肺炎的特征是炎症性2型免疫反应,伴嗜酸性粒细胞涌入肺部。为了研究嗜酸性粒细胞的作用模式和烟曲霉触发的信号事件,我们使用了小鼠骨髓来源的嗜酸性粒细胞与分生孢子的体外共培养系统。利用小分子抑制剂,我们确定了嗜酸性粒细胞在烟曲霉对抗过程中的信号模块。嗜酸性粒细胞降低了真菌的代谢活性,但抑制相关信号模块并不影响嗜酸性粒细胞对抗时的这种现象。嗜酸性粒细胞参与原癌基因酪氨酸-蛋白激酶Src、磷脂酰肌醇3-激酶、p38丝裂原活化蛋白激酶以及钙离子,在一定程度上参与丝氨酸/苏氨酸-蛋白激酶Akt和蛋白精氨酸脱亚胺酶4分泌Th2细胞因子和趋化因子。Src和PI3K激酶也参与了A. fumigatus介导的ROS产生和嗜酸性粒细胞表面受体的调节。尤其是Src和PI3K抑制剂可以阻止烟曲霉诱导的嗜酸性粒细胞活化。综上所述,嗜酸性粒细胞与烟曲霉相互作用过程中信号级联的鉴定为ABPA背景下宿主-病原体相互作用提供了相关的见解,从而产生治疗前景。
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引用次数: 0
Aspergillus fumigatus sensu stricto genetic diversity from cystic fibrosis patients 来自囊性纤维化患者的严格意义上的烟曲霉遗传多样性
IF 4.5 3区 医学 Q1 MICROBIOLOGY Pub Date : 2024-10-22 DOI: 10.1016/j.ijmm.2024.151639
Aryse Martins Melo , Vanice Rodrigues Poester , Mariana Rodrigues Trápaga , Fernando Azevedo Faria , Valério Aquino , Cecília Bittencourt Severo , David A. Stevens , Cristina Veríssimo , Raquel Sabino , Melissa Orzechowski Xavier
We aimed to access the genetic diversity of Apergillus fumigatus strains obtained from cystic fibrosis (CF) patients from southern Brazil. A. fumigatus sensu stricto isolates from respiratory clinical specimens were genotyped by microsatellite markers and azole resistance was evaluated by azole-agar screening. Twenty-seven isolates from twenty-seven patients showed a high genetic diversity, with the differentiation of 25 different genotypes (25 unique and one common to two isolates). All isolates were susceptible to the azoles tested. We believe that prospectively monitoring A. fumigatus genetic diversity is essential to identify interpatient transmission and outbreaks, as is the identification of resistant strains.
我们的目的是了解从巴西南部囊性纤维化(CF)患者体内获得的烟曲霉菌株的遗传多样性。通过微卫星标记对呼吸道临床标本中的严格意义上的烟曲霉分离株进行了基因分型,并通过唑-琼脂筛选评估了唑抗性。来自 27 名患者的 27 个分离株显示出高度的遗传多样性,分化出 25 种不同的基因型(25 种独特的基因型和一种两个分离株共有的基因型)。所有分离株都对测试的唑类药物敏感。我们认为,前瞻性地监测烟曲霉的遗传多样性对于识别患者间传播和疫情爆发以及耐药菌株的鉴定至关重要。
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引用次数: 0
Genomic Analysis and Virulence Assessment of Hypervirulent Klebsiella pneumoniae K16-ST660 in Severe Cervical Necrotizing Fasciitis 重度宫颈坏死性筋膜炎中超病毒肺炎克雷伯菌 K16-ST660 的基因组分析和毒力评估
IF 4.5 3区 医学 Q1 MICROBIOLOGY Pub Date : 2024-10-15 DOI: 10.1016/j.ijmm.2024.151635
Jun Huang , Jiaru Zhuang , Lin Wan , Yutong Liu , Yiran Du , Lu Zhou , Renjing Hu , Lanfeng Shen

Objective

To investigate the source of infection in a patient with recurrent severe neck infections caused by Klebsiella pneumoniae and to analyze the virulence of isolates obtained from different sites of the patient.

Methods

We collected preoperative neck abscess puncture fluid, intraoperative neck drainage fluid, sputum, intestinal fecal specimens, and blood samples from a patient who visited Wuxi Second People's Hospital twice between 2017 and 2018. We conducted isolation, identification, drug sensitivity tests, and string tests on the isolates. Capsule serotyping and virulence gene analysis were performed using PCR. The genetic relationship of different isolates was assessed by Multilocus Sequence Typing and virulence was evaluated using the Galleria mellonella infection model. Additionally, whole-genome sequencing was used to analyze the chromosomal and plasmid genes of one isolate.

Results

Klebsiella pneumoniae was detected in the sputum and fecal specimens from both hospitalizations, as well as the preoperative ultrasound-guided puncture fluid and intraoperative drainage fluid from the first hospitalization, resulting in six isolates. These isolates were all K16 serotype, positive in the string test, and identified as ST660 by Multilocus Sequence Typing, indicating they belonged to the same clone. Virulence gene analysis showed that wcaG, iucB, iroNB, rmpA, rmpA2, Aer, kfuBC, ureA, fimH, mrkD, uge, and peg344 were positive, while allS, cf29a, and Wzy_K1 were negative. In the Galleria mellonella virulence assay, the lethality of different isolates was dose-dependent. The K16 group showed significantly higher larval mortality compared to other control groups (including K1, K2, K5, K20, and K57 groups). Genome sequencing revealed that plasmid p17388 carried numerous virulence genes and insertion sequences, particularly ISKPN74, and showed high homology with other Klebsiella plasmids.

Conclusion

This study is the first to report severe cervical necrotizing fasciitis caused by the K16-ST660 Klebsiella pneumoniae Isolate. The high virulence of these isolates was confirmed by the Galleria mellonella virulence assay and the detection of numerous virulence genes. In-depth analysis of plasmid p17388 suggests that ISKPN74 may enhance stable integration of the plasmid into the bacterial chromosome through recombinases and transposases, thereby reducing the likelihood of plasmid loss and increasing bacterial virulence. Additionally, IS5 family insertion sequences may carry extra promoters or enhancers that, when inserted upstream of mucoviscosity-associated genes such as rmpA, may increase the transcription levels of downstream genes. This ISKPN74-mediated integration or insertion reveals a complex genetic mechanism that may contribute to the severity of infections caused by ST
目的调查一名由肺炎克雷伯菌引起的反复严重颈部感染患者的感染源,并分析从患者不同部位分离到的菌株的毒力:我们收集了2017年至2018年期间两次到无锡市第二人民医院就诊的一名患者的术前颈部脓肿穿刺液、术中颈部引流液、痰液、肠道粪便标本和血液标本。我们对分离物进行了分离、鉴定、药敏试验和串联试验。使用 PCR 进行了胶囊血清分型和毒力基因分析。通过多焦点序列分型评估了不同分离株之间的遗传关系,并使用Galleria mellonella感染模型评估了毒力。此外,还利用全基因组测序分析了一个分离株的染色体和质粒基因:结果:在两次住院的痰液和粪便标本中,以及第一次住院的术前超声引导穿刺液和术中引流液中都检测到了肺炎克雷伯菌,共检出 6 个分离株。这些分离物均为 K16 血清型,串联检测呈阳性,经多聚焦序列分型鉴定为 ST660,表明它们属于同一克隆。病毒基因分析表明,wcaG、iucB、iroNB、rmpA、rmpA2、Aer、kfuBC、ureA、fimH、mrkD、uge 和 peg344 为阳性,而 allS、cf29a 和 Wzy_K1 为阴性。在黑线蝇毒力试验中,不同分离物的致死率呈剂量依赖性。与其他对照组(包括 K1、K2、K5、K20 和 K57 组)相比,K16 组的幼虫死亡率明显更高。基因组测序显示,质粒p17388携带大量毒力基因和插入序列,尤其是ISKPN74,并与其他克雷伯氏菌质粒表现出高度同源性:本研究首次报道了由 K16-ST660 肺炎克雷伯氏菌分离株引起的严重宫颈坏死性筋膜炎。Galleria mellonella 毒力测定和大量毒力基因的检测证实了这些分离株的高毒力。对质粒 p17388 的深入分析表明,ISKPN74 可通过重组酶和转座酶增强质粒与细菌染色体的稳定整合,从而降低质粒丢失的可能性并增强细菌的毒力。此外,IS5 家族的插入序列可能带有额外的启动子或增强子,当插入粘液相关基因(如 rmpA)的上游时,可提高下游基因的转录水平。这种由 ISKPN74 介导的整合或插入揭示了一种复杂的遗传机制,它可能会导致 ST660 分离物感染的严重程度。我们的发现为 ST660-K16 肺炎克雷伯氏菌的毒力和结构提供了新的见解,表明进一步研究这些插入序列增强毒力的具体机制有助于开发新型感染管理策略。
{"title":"Genomic Analysis and Virulence Assessment of Hypervirulent Klebsiella pneumoniae K16-ST660 in Severe Cervical Necrotizing Fasciitis","authors":"Jun Huang ,&nbsp;Jiaru Zhuang ,&nbsp;Lin Wan ,&nbsp;Yutong Liu ,&nbsp;Yiran Du ,&nbsp;Lu Zhou ,&nbsp;Renjing Hu ,&nbsp;Lanfeng Shen","doi":"10.1016/j.ijmm.2024.151635","DOIUrl":"10.1016/j.ijmm.2024.151635","url":null,"abstract":"<div><h3>Objective</h3><div>To investigate the source of infection in a patient with recurrent severe neck infections caused by <em>Klebsiella pneumoniae</em> and to analyze the virulence of isolates obtained from different sites of the patient.</div></div><div><h3>Methods</h3><div>We collected preoperative neck abscess puncture fluid, intraoperative neck drainage fluid, sputum, intestinal fecal specimens, and blood samples from a patient who visited Wuxi Second People's Hospital twice between 2017 and 2018. We conducted isolation, identification, drug sensitivity tests, and string tests on the isolates. Capsule serotyping and virulence gene analysis were performed using PCR. The genetic relationship of different isolates was assessed by Multilocus Sequence Typing and virulence was evaluated using the Galleria mellonella infection model. Additionally, whole-genome sequencing was used to analyze the chromosomal and plasmid genes of one isolate.</div></div><div><h3>Results</h3><div><em>Klebsiella pneumoniae</em> was detected in the sputum and fecal specimens from both hospitalizations, as well as the preoperative ultrasound-guided puncture fluid and intraoperative drainage fluid from the first hospitalization, resulting in six isolates. These isolates were all K16 serotype, positive in the string test, and identified as ST660 by Multilocus Sequence Typing, indicating they belonged to the same clone. Virulence gene analysis showed that <em>wcaG, iucB, iroNB, rmpA, rmpA2, Aer, kfuBC, ureA, fimH, mrkD, uge</em>, and <em>peg344</em> were positive, while <em>allS, cf29a</em>, and <em>Wzy_K1</em> were negative. In the Galleria mellonella virulence assay, the lethality of different isolates was dose-dependent. The K16 group showed significantly higher larval mortality compared to other control groups (including K1, K2, K5, K20, and K57 groups). Genome sequencing revealed that plasmid p17388 carried numerous virulence genes and insertion sequences, particularly <em>ISKPN74</em>, and showed high homology with other Klebsiella plasmids.</div></div><div><h3>Conclusion</h3><div>This study is the first to report severe cervical necrotizing fasciitis caused by the K16-ST660 <em>Klebsiella pneumoniae</em> Isolate. The high virulence of these isolates was confirmed by the Galleria mellonella virulence assay and the detection of numerous virulence genes. In-depth analysis of plasmid p17388 suggests that ISKPN74 may enhance stable integration of the plasmid into the bacterial chromosome through recombinases and transposases, thereby reducing the likelihood of plasmid loss and increasing bacterial virulence. Additionally, IS5 family insertion sequences may carry extra promoters or enhancers that, when inserted upstream of mucoviscosity-associated genes such as rmpA, may increase the transcription levels of downstream genes. This ISKPN74-mediated integration or insertion reveals a complex genetic mechanism that may contribute to the severity of infections caused by ST","PeriodicalId":50312,"journal":{"name":"International Journal of Medical Microbiology","volume":"317 ","pages":"Article 151635"},"PeriodicalIF":4.5,"publicationDate":"2024-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142479635","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Co-transcribed genes SA1833-SA1832 promote persister formation by regulating the transcription of holin-like gene lrgA in methicillin-resistant Staphylococcus aureus strain N315 共转录基因 SA1833-SA1832 通过调节耐甲氧西林金黄色葡萄球菌菌株 N315 中 holin-like 基因 lrgA 的转录,促进顽固菌的形成。
IF 4.5 3区 医学 Q1 MICROBIOLOGY Pub Date : 2024-10-15 DOI: 10.1016/j.ijmm.2024.151636
Shiwen Xu , Jiade Zhu , Yujie Li , Baolin Sun
Staphylococcus aureus, a facultative anaerobic gram-positive bacterial pathogen, has posed major threat to public health worldwide. Upon S. aureus infection, the host immune system is activated for clearance. However, intracellular S. aureus, which remains viable for an extended time, has evolved the ability to escape from immune response and extracellular antibiotics. One of possible strategies is the formation of persisters. Persistence is one of the major causes of S. aureus relapse infection but the underlying mechanisms remain obscure. Here, we identified two co-transcribed genes SA1833-SA1832 that are involved in persister formation in S. aureus. Dysfunction of SA1833 and/or SA1832 significantly reduces persister formation in the presence of ceftizoxime. Additionally, we found that the expression of SA1833 and SA1832 under the induction of oxidative stress and SOS response is strictly regulated by the LexA-RecA pathway. Interestingly, SA1833-SA1832 contributes to persister formation in an lrgA-dependent manner. Moreover, the mouse RAW264.7 macrophage infection model indicated that disrupting SA1833-SA1832 inhibits S. aureus from infecting macrophages and impairs its ability to survive in the intracellular environment.
金黄色葡萄球菌是一种兼性厌氧革兰阳性细菌病原体,对全球公共卫生构成重大威胁。感染金黄色葡萄球菌后,宿主的免疫系统会被激活以清除病菌。然而,细胞内的金黄色葡萄球菌可长期存活,已进化出逃避免疫反应和细胞外抗生素的能力。其中一种可能的策略就是形成持久菌。持续存在是金黄色葡萄球菌复发感染的主要原因之一,但其潜在机制仍不清楚。在这里,我们发现了两个共同转录的基因 SA1833-SA1832,它们参与了金黄色葡萄球菌中持久体的形成。在头孢唑肟存在的情况下,SA1833和/或SA1832的功能障碍会显著减少顽固菌的形成。此外,我们还发现,在氧化应激和 SOS 反应的诱导下,SA1833 和 SA1832 的表达受到 LexA-RecA 通路的严格调控。有趣的是,SA1833-SA1832 是以一种依赖 lrgA 的方式促进宿主形成的。此外,小鼠 RAW264.7 巨噬细胞感染模型表明,破坏 SA1833-SA1832 可抑制金黄色葡萄球菌感染巨噬细胞,并损害其在细胞内环境中的生存能力。
{"title":"Co-transcribed genes SA1833-SA1832 promote persister formation by regulating the transcription of holin-like gene lrgA in methicillin-resistant Staphylococcus aureus strain N315","authors":"Shiwen Xu ,&nbsp;Jiade Zhu ,&nbsp;Yujie Li ,&nbsp;Baolin Sun","doi":"10.1016/j.ijmm.2024.151636","DOIUrl":"10.1016/j.ijmm.2024.151636","url":null,"abstract":"<div><div><em>Staphylococcus aureus</em>, a facultative anaerobic gram-positive bacterial pathogen, has posed major threat to public health worldwide. Upon <em>S. aureus</em> infection, the host immune system is activated for clearance. However, intracellular <em>S. aureus</em>, which remains viable for an extended time, has evolved the ability to escape from immune response and extracellular antibiotics. One of possible strategies is the formation of persisters. Persistence is one of the major causes of <em>S. aureus</em> relapse infection but the underlying mechanisms remain obscure. Here, we identified two co-transcribed genes <em>SA1833-SA1832</em> that are involved in persister formation in <em>S. aureus</em>. Dysfunction of <em>SA1833</em> and/or <em>SA1832</em> significantly reduces persister formation in the presence of ceftizoxime. Additionally, we found that the expression of <em>SA1833</em> and <em>SA1832</em> under the induction of oxidative stress and SOS response is strictly regulated by the LexA-RecA pathway. Interestingly, <em>SA1833-SA1832</em> contributes to persister formation in an <em>lrgA</em>-dependent manner. Moreover, the mouse RAW264.7 macrophage infection model indicated that disrupting <em>SA1833-SA1832</em> inhibits <em>S. aureus</em> from infecting macrophages and impairs its ability to survive in the intracellular environment.</div></div>","PeriodicalId":50312,"journal":{"name":"International Journal of Medical Microbiology","volume":"317 ","pages":"Article 151636"},"PeriodicalIF":4.5,"publicationDate":"2024-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142479634","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Desiccation tolerance and reduced antibiotic resistance: Key drivers in ST239-III to ST22-IV MRSA clonal replacement at a Malaysian teaching hospital 耐干燥性和抗生素耐药性降低:马来西亚一家教学医院从 ST239-III 到 ST22-IV MRSA 克隆替换的关键驱动因素。
IF 4.5 3区 医学 Q1 MICROBIOLOGY Pub Date : 2024-10-13 DOI: 10.1016/j.ijmm.2024.151638
Nurul Amirah Mohamad Farook , Silvia Argimón , Muttaqillah Najihan Abdul Samat , Sharifah Azura Salleh , Sunita Sulaiman , Toh Leong Tan , Petrick Periyasamy , Chee Lan Lau , Nor Azila Muhammad Azami , Raja Mohd Fadhil Raja Abd Rahman , Mia Yang Ang , Hui-min Neoh
Molecular surveillance of methicillin-resistant Staphylococcus aureus (MRSA) isolated from Hospital Canselor Tuanku Muhriz (HCTM), a Malaysian teaching hospital revealed clonal replacement events of SCCmec type III-SCCmercury to SCCmec type IV strains before the year 2017; however, the reasons behind this phenomenon are still unclear. This study aimed to identify factors associated with the clonal replacement using genomic sequencing and phenotypic investigations (antibiogram profiling, growth rate and desiccation tolerance determination, survival in vancomycin sub-minimum inhibitory concentration (MIC) determination) of representative HCTM MRSA strains isolated in four-year intervals from 2005 – 2017 (n = 16). HCTM Antimicrobial Stewardship (AMS) and Infection Prevention and Control (IPC) policies were also reviewed. Phylogenetic analyses revealed the presence of 3 major MRSA lineages: ST239-III, ST22-IV and ST6-IV; MRSAs with the same STs shared similar core and accessory genomes. Majority of the ST239-III strains isolated in earlier years of the surveillance (2005, 2009 and 2013) were resistant to many antibiotics and harboured multiple AMR and virulence genes compared to ST22-IV and ST6-IV strains (isolated in 2013 and 2017). Interestingly, ST22-IV and ST6-IV MRSAs grew significantly faster and were more resistant to desiccation than ST239-III (p < 0.05), even though the later clone survived better post-vancomycin exposure. Intriguingly, ST22-IV was outcompeted by ST239-III in broth co-cultures; though it survived better when desiccated together with ST239-III. Higher desiccation tolerance and fewer carriage of AMR genes by ST22-IV, together with reduction of antibiotic selection pressure in HCTM (due to AMS and IPC policies) during 2005 – 2017 may have provided the clone a competitive edge in replacing the previously dominant ST239-III in HCTM. This study highlights the importance of MRSA surveillance for a clearer picture of circulating clones and clonal changes. To our knowledge, this is the first genomic epidemiology study of MRSA in Malaysia, which will serve as baseline genomic data for future surveillance.
对马来西亚教学医院Canselor Tuanku Muhriz医院(HCTM)分离出的耐甲氧西林金黄色葡萄球菌(MRSA)进行分子监测发现,2017年之前,SCCmec III型-SCCmercury菌株克隆替换为SCCmec IV型菌株的事件时有发生;然而,这一现象背后的原因仍不清楚。本研究旨在利用基因组测序和表型调查(抗生素谱分析、生长速度和干燥耐受性测定、万古霉素次最低抑菌浓度(MIC)测定中的存活率),对2005-2017年四年间分离的具有代表性的HCTM MRSA菌株(n = 16)进行研究,以确定与克隆置换相关的因素。此外,还审查了哈医大一院抗菌药物管理(AMS)和感染预防与控制(IPC)政策。系统发育分析表明存在 3 个主要的 MRSA 系:ST239-III、ST22-IV 和 ST6-IV;具有相同 ST 的 MRSA 共享相似的核心基因组和附属基因组。与 ST22-IV 和 ST6-IV 株系(分离于 2013 年和 2017 年)相比,早些年(2005 年、2009 年和 2013 年)分离的 ST239-III 株系大多对多种抗生素具有耐药性,并携带多种 AMR 和毒力基因。有趣的是,ST22-IV和ST6-IV MRSA比ST239-III生长得更快,对干燥的耐药性也更强(p < 0.05),尽管后者在万古霉素暴露后存活率更高。有趣的是,在肉汤共培养中,ST22-IV 被 ST239-III 竞争;但当它与 ST239-III 一起干燥时,存活率更高。ST22-IV 更强的干燥耐受性和更少的 AMR 基因携带,再加上 2005 - 2017 年间 HCTM 中抗生素选择压力的降低(由于 AMS 和 IPC 政策),可能为该克隆提供了竞争优势,从而取代了之前在 HCTM 中占主导地位的 ST239-III。这项研究强调了 MRSA 监测对于更清晰地了解循环克隆和克隆变化的重要性。据我们所知,这是马来西亚首次对 MRSA 进行基因组流行病学研究,这将成为未来监测的基线基因组数据。
{"title":"Desiccation tolerance and reduced antibiotic resistance: Key drivers in ST239-III to ST22-IV MRSA clonal replacement at a Malaysian teaching hospital","authors":"Nurul Amirah Mohamad Farook ,&nbsp;Silvia Argimón ,&nbsp;Muttaqillah Najihan Abdul Samat ,&nbsp;Sharifah Azura Salleh ,&nbsp;Sunita Sulaiman ,&nbsp;Toh Leong Tan ,&nbsp;Petrick Periyasamy ,&nbsp;Chee Lan Lau ,&nbsp;Nor Azila Muhammad Azami ,&nbsp;Raja Mohd Fadhil Raja Abd Rahman ,&nbsp;Mia Yang Ang ,&nbsp;Hui-min Neoh","doi":"10.1016/j.ijmm.2024.151638","DOIUrl":"10.1016/j.ijmm.2024.151638","url":null,"abstract":"<div><div>Molecular surveillance of methicillin-resistant <em>Staphylococcus aureus</em> (MRSA) isolated from Hospital Canselor Tuanku Muhriz (HCTM), a Malaysian teaching hospital revealed clonal replacement events of SCC<em>mec</em> type III-SCC<em>mercury</em> to SCC<em>mec</em> type IV strains before the year 2017; however, the reasons behind this phenomenon are still unclear. This study aimed to identify factors associated with the clonal replacement using genomic sequencing and phenotypic investigations (antibiogram profiling, growth rate and desiccation tolerance determination, survival in vancomycin sub-minimum inhibitory concentration (MIC) determination) of representative HCTM MRSA strains isolated in four-year intervals from 2005 – 2017 (n = 16). HCTM Antimicrobial Stewardship (AMS) and Infection Prevention and Control (IPC) policies were also reviewed. Phylogenetic analyses revealed the presence of 3 major MRSA lineages: ST239-III, ST22-IV and ST6-IV; MRSAs with the same STs shared similar core and accessory genomes. Majority of the ST239-III strains isolated in earlier years of the surveillance (2005, 2009 and 2013) were resistant to many antibiotics and harboured multiple AMR and virulence genes compared to ST22-IV and ST6-IV strains (isolated in 2013 and 2017). Interestingly, ST22-IV and ST6-IV MRSAs grew significantly faster and were more resistant to desiccation than ST239-III (<em>p</em> &lt; 0.05), even though the later clone survived better post-vancomycin exposure. Intriguingly, ST22-IV was outcompeted by ST239-III in broth co-cultures; though it survived better when desiccated together with ST239-III. Higher desiccation tolerance and fewer carriage of AMR genes by ST22-IV, together with reduction of antibiotic selection pressure in HCTM (due to AMS and IPC policies) during 2005 – 2017 may have provided the clone a competitive edge in replacing the previously dominant ST239-III in HCTM. This study highlights the importance of MRSA surveillance for a clearer picture of circulating clones and clonal changes. To our knowledge, this is the first genomic epidemiology study of MRSA in Malaysia, which will serve as baseline genomic data for future surveillance.</div></div>","PeriodicalId":50312,"journal":{"name":"International Journal of Medical Microbiology","volume":"317 ","pages":"Article 151638"},"PeriodicalIF":4.5,"publicationDate":"2024-10-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142512227","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Improved ability to utilize lactose and grow in milk as a potential explanation for emergence of the novel bovine Staphylococcus aureus ST5477 提高利用乳糖和在牛奶中生长的能力是新型牛金黄色葡萄球菌 ST5477 出现的潜在原因。
IF 4.5 3区 医学 Q1 MICROBIOLOGY Pub Date : 2024-10-11 DOI: 10.1016/j.ijmm.2024.151637
Frank M. Aarestrup , Egon B. Hansen , Happiness H. Kumburu , Tutu Mzee , Saria Otani
Staphyloccous aureus belonging to sequence type 5477 have recently been identified as a predominant clone causing bovine mastitis in Rwanda and Tanzania. We compared nine S. aureus ST5477 to 17 isolates belonging to other sequence types by their biochemical profile and ability to acidify milk and grow in minimum media containing lactose. We found that ST5477 isolates all were positive in ONPG (o-nitrophenyl-β-D-galactopyranoside) test and negative for mannitol fermentation potentially challenging the correct identification of this sequence type as S. aureus. In addition, ST5477 isolates were all much faster in acidifying milk and grew faster in minimal media with lactose compared to other strains suggesting an increased lactose utilization and thereby adaptation to the bovine udder environment as a possible reason for the recent successful emergence. Comparison of the lac gene region of the genome of a recently sequenced ST5477 and that of S. aureus reference genome showed that both strains contained the known lacABCD genes involved in the lactose degradation, but that ST5477 had a 12 amino-acid deletion and two amino-acid differences in the lac gene transcription regulator, suggesting that increased transcription might play a role. In conclusion, these preliminary data suggests that improved lactose utilization and the ability to grow faster in milk may have been a key feature for the recent success of ST5477 as a bovine adapted clone.
最近在卢旺达和坦桑尼亚发现,属于序列类型 5477 的金黄色葡萄球菌是引起牛乳腺炎的主要克隆。我们比较了 9 株 ST5477 型金黄色葡萄球菌和 17 株属于其他序列类型的分离株的生化特征以及酸化牛奶和在含乳糖的最低培养基中生长的能力。我们发现,ST5477 分离物在 ONPG(邻硝基苯基-β-D-吡喃半乳糖苷)测试中均呈阳性,而在甘露醇发酵中呈阴性,这可能对正确鉴定该序列类型为金黄色葡萄球菌提出了挑战。此外,与其他菌株相比,ST5477 分离物在酸化牛奶中的生长速度更快,在含乳糖的最小培养基中的生长速度也更快,这表明该菌株对乳糖的利用率增加,从而适应了牛乳房环境,这可能是该菌株最近成功出现的一个原因。对最近测序的 ST5477 基因组中的 lac 基因区和金黄色葡萄球菌参考基因组进行比较后发现,两株菌株都含有参与乳糖降解的已知 lacABCD 基因,但 ST5477 的 lac 基因转录调节因子有 12 个氨基酸缺失和两个氨基酸差异,这表明转录增加可能起到了一定作用。总之,这些初步数据表明,乳糖利用率的提高和在牛奶中更快生长的能力可能是 ST5477 作为牛适应性克隆最近取得成功的一个关键特征。
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引用次数: 0
In silico analysis and functional characterization of a leucine-rich repeat protein of Leptospira interrogans 讯号钩端螺旋体富亮氨酸重复蛋白的硅学分析和功能鉴定
IF 4.5 3区 医学 Q1 MICROBIOLOGY Pub Date : 2024-09-01 DOI: 10.1016/j.ijmm.2024.151633
João P. Gaspar , Maria B. Takahashi , Aline F. Teixeira , Ana L.T.O. Nascimento

Pathogenic spirochetes of the genus Leptospira are the causative agent of leptospirosis, a widely disseminated zoonosis that affects humans and animals. The ability of leptospires to quickly cross host barriers causing infection is not yet fully understood. Thus, understanding the mechanisms of pathogenicity is important to combat leptospiral infection. Outer membrane proteins are interesting targets to study as they are able to interact with host molecules. Proteins containing leucine-rich repeat (LRR) domains are characterized by the presence of multiple regions containing leucine residues and they have putative functions related to host-pathogen interactions. Hence, the present study aimed to clone and express the recombinant protein encoded by the LIC11098 gene, an LRR protein of L. interrogans serovar Copenhageni. In silico analyses predicted that the target protein is conserved among pathogenic strains of Leptospira, having a signal peptide and multiple LRR domains. The DNA sequence encoding the LRR protein was cloned in frame into the pAE vector, expressed without mutations in Escherichia coli and purified by His-tag chromatography. Circular dichroism (CD) spectrum showed that the recombinant protein was predominantly composed of β-sheets. A dose-dependent interaction was observed with cellular and plasma fibronectins, laminin and the complement system component C9, suggesting a possible role of the protein encoded by LIC11098 gene at the initial stages of infection.

钩端螺旋体属的致病螺旋体是钩端螺旋体病的病原体,这是一种影响人类和动物的广泛传播的人畜共患疾病。人们对钩端螺旋体迅速穿越宿主屏障造成感染的能力尚未完全了解。因此,了解致病机制对于防治钩端螺旋体感染非常重要。外膜蛋白是有趣的研究目标,因为它们能够与宿主分子相互作用。含有富亮氨酸重复(LRR)结构域的蛋白质的特点是存在多个含有亮氨酸残基的区域,它们具有与宿主-病原体相互作用相关的推测功能。因此,本研究旨在克隆和表达 LIC11098 基因编码的重组蛋白。硅学分析预测,目标蛋白在钩端螺旋体致病株中是保守的,具有一个信号肽和多个 LRR 结构域。编码 LRR 蛋白的 DNA 序列被克隆到 pAE 载体中,在大肠杆菌中无突变地表达,并通过 His-tag 层析进行纯化。圆二色性(CD)光谱显示,重组蛋白主要由β片层组成。观察到该蛋白与细胞和血浆纤维连接蛋白、层粘连蛋白和补体系统成分 C9 有剂量依赖性相互作用,这表明 LIC11098 基因编码的蛋白可能在感染初期发挥作用。
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引用次数: 0
Functional profiling of CHAP domain-containing peptidoglycan hydrolases of Staphylococcus aureus USA300 uncovers potential targets for anti-staphylococcal therapies 金黄色葡萄球菌 USA300 含 CHAP 结构域肽聚糖水解酶的功能分析发现了抗葡萄球菌疗法的潜在靶点
IF 4.5 3区 医学 Q1 MICROBIOLOGY Pub Date : 2024-08-08 DOI: 10.1016/j.ijmm.2024.151632
Min Wang , Xiaofang Li , Francis M. Cavallo , Harita Yedavally , Sjouke Piersma , Elisa J.M. Raineri , Elias Vera Murguia , Jeroen Kuipers , Zhenhua Zhang , Jan Maarten van Dijl , Girbe Buist

The bacterial pathogen Staphylococcus aureus employs a thick cell wall for protection against physical and chemical insults. This wall requires continuous maintenance to ensure strength and barrier integrity, but also to permit bacterial growth and division. The main cell wall component is peptidoglycan. Accordingly, the bacteria produce so-called peptidoglycan hydrolases (PGHs) that cleave glycan strands to facilitate growth, cell wall remodelling, separation of divided cells and release of exported proteins into the extracellular milieu. A special class of PGHs contains so-called ‘cysteine, histidine-dependent amidohydrolase/peptidase’ (CHAP) domains. In the present study, we profiled the roles of 11 CHAP PGHs encoded by the core genome of S. aureus USA300 LAC. Mutant strains lacking individual CHAP PGHs were analysed for growth, cell morphology, autolysis, and invasion and replication inside human lung epithelial cells. The results show that several investigated CHAP PGHs contribute to different extents to extracellular and intracellular growth and replication of S. aureus, septation of dividing cells, daughter cell separation once the division process is completed, autolysis and biofilm formation. In particular, the CHAP PGHs Sle1 and SAUSA300_2253 control intracellular staphylococcal replication and the resistance to β-lactam antibiotics like oxacillin. This makes the S. aureus PGHs in general, and the Sle1 and SAUSA300_2253 proteins in particular, attractive targets for future prophylactic or therapeutic anti-staphylococcal interventions. Alternatively, these cell surface-exposed enzymes, or particular domains of these enzymes, could be applied in innovative anti-staphylococcal therapies.

细菌病原体金黄色葡萄球菌具有厚厚的细胞壁,可以抵御物理和化学侵袭。这种细胞壁需要持续维护,以确保强度和屏障完整性,同时也允许细菌生长和分裂。细胞壁的主要成分是肽聚糖。因此,细菌会产生所谓的肽聚糖水解酶(PGHs),它能裂解糖链,促进生长、细胞壁重塑、分裂细胞分离以及向细胞外环境释放输出蛋白质。一类特殊的 PGH 含有所谓的 "半胱氨酸、组氨酸依赖性酰胺水解酶/肽酶"(CHAP)结构域。在本研究中,我们分析了金黄色葡萄球菌 USA300 LAC 核心基因组编码的 11 个 CHAP PGH 的作用。我们对缺乏单个 CHAP PGHs 的突变菌株的生长、细胞形态、自溶以及在人肺上皮细胞内的侵袭和复制进行了分析。结果表明,所研究的几种CHAP PGH在不同程度上促进了金黄色葡萄球菌的胞外和胞内生长与复制、分裂细胞的隔膜、分裂过程完成后子细胞的分离、自溶和生物膜的形成。特别是,CHAP PGHs Sle1 和 SAUSA300_2253 可控制金黄色葡萄球菌的胞内复制和对β-内酰胺类抗生素(如奥沙西林)的耐药性。这使得金黄色葡萄球菌 PGHs,尤其是 Sle1 和 SAUSA300_2253 蛋白质,成为未来预防或治疗抗葡萄球菌干预措施的诱人靶标。另外,这些暴露于细胞表面的酶或这些酶的特定结构域也可用于创新的抗葡萄球菌疗法。
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引用次数: 0
Clinical characteristics of community-onset Clostridioides difficile infections at a tertiary hospital in mainland China: A fourteen-year (2010–2023) retrospective study 中国大陆某三甲医院社区发病艰难梭菌感染的临床特征:一项为期十四年(2010-2023年)的回顾性研究
IF 4.5 3区 医学 Q1 MICROBIOLOGY Pub Date : 2024-07-14 DOI: 10.1016/j.ijmm.2024.151631
Xinrong Jiang , Junyu Bian , Tao Lv , Lisi Zheng , Yuhong Zhao , Jianqin He , Yunbo Chen

Background

Clostridioides difficile infection (CDI) is an increasingly common disease in healthcare facilities and community settings. However, there are limited reports of community-onset CDI (CO-CDI) in China.

Methods

We collected diarrheal stool samples from 3885 patients who went to outpatient department or emergency department in a tertiary hospital in China during 2010–2023, analyzed the correlation between patients’ basic information and the detection rate of CDI. Besides, all stool samples from 3885 outpatients included were tested by culturing. Moreover, we randomly selected 89 patients’ stools during the 14 years and isolated 126 C. difficile strains from them. The presence of toxin genes (tcdA, tcdB, cdtA, and cdtB) were confirmed by PCR. Toxigenic strains were typed using multilocus sequence typing (MLST). Susceptibility to 9 antimicrobials was evaluated using the E-test.

Results

528 of 3885 patients (13.6 %) with diarrhea were finally diagnosed as CDI. The median age of patients included was 51 years (6 months-95 years), while the median of patients with CDI was older than patients with negative results [55.5 years (6 months-93 years) vs. 50 years (9 months −95 years), p < 0.001]. In winter, patients with diarrhea might be more likely to have CDI. The detection rate of CDI of patients in emergency department was much higher than those in other outpatients (20.7 % vs. 12.4 %, p < 0.001), and did differ from each outpatient departments (p < 0.05). There were 95 isolated strains detected as toxigenic C. difficile. Among these strains, 82 (86.3 %) had the tcdA and tcdB genes (A+B+) and 5 of these 82 strains were positive for the binary toxin genes (cdtA and cdtB) (A+B+CDT+). There were 15 different sequence types (STs) by multilocus sequence typing (MLST), while the most ST was ST-54 (23.2 %). ST types composition was relatively stable over the time span of this study. Some strains had high resistance to ciprofloxacin, clindamycin, and erythromycin. Twenty-three isolates (24.2 %) were multidrug-resistant.

Conclusions

Outpatients with CDI were common among patients having diarrhea during this period in our hospital. Elderly patients and patients went to emergency department may be susceptible to CDI. Based on MLST, the result revealed that the C. difficile isolates had high genetic diversity and maintained stability in this period. All isolates were susceptible to metronidazole and vancomycin, and nearly one quarter of all isolates had multidrug resistance.

背景艰难梭菌感染(CDI)在医疗机构和社区环境中越来越常见。方法 我们收集了 2010-2023 年间在中国某三甲医院门诊或急诊就诊的 3885 例患者的腹泻粪便样本,分析了患者基本信息与 CDI 检出率之间的相关性。此外,我们还对 3885 名门诊患者的粪便样本进行了培养检测。此外,我们随机抽取了 14 年间 89 名患者的粪便,从中分离出 126 株艰难梭菌。毒素基因(ccdA、ccdB、ccdtA 和 cdtB)的存在通过 PCR 得到了证实。利用多焦点序列分型(MLST)对致毒菌株进行了分型。结果 3885 名腹泻患者中有 528 人(13.6%)最终被诊断为 CDI。纳入患者的中位年龄为 51 岁(6 个月-95 岁),而 CDI 患者的中位年龄比阴性结果的患者大[55.5 岁(6 个月-93 岁)对 50 岁(9 个月-95 岁),P < 0.001]。在冬季,腹泻患者可能更容易感染 CDI。急诊科患者的 CDI 检出率远高于其他门诊患者(20.7% vs. 12.4%,p < 0.001),且与各门诊科室存在差异(p < 0.05)。有 95 株分离菌株被检测为致毒艰难梭菌。在这些菌株中,82 株(86.3%)具有 tcdA 和 tcdB 基因(A+B+),其中 5 株的二元毒素基因(cttA 和 cdtB)呈阳性(A+B+CDT+)。通过多焦点序列分型(MLST),有 15 种不同的序列类型(ST),其中最多的序列类型是 ST-54(23.2%)。在本研究的时间跨度内,ST 类型组成相对稳定。一些菌株对环丙沙星、克林霉素和红霉素的耐药性较高。23株分离菌株(24.2%)对多种药物产生耐药性。老年患者和急诊患者可能是 CDI 的易感人群。根据 MLST,结果显示艰难梭菌分离株具有高度遗传多样性,并在此期间保持稳定。所有分离株都对甲硝唑和万古霉素敏感,近四分之一的分离株具有多重耐药性。
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International Journal of Medical Microbiology
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