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Preface for the special feature on “Population ecology of COVID‐19: Similarities and differences between epidemiology and ecological population management” 为 "COVID-19 的种群生态学:流行病学与生态种群管理的异同 "特辑作序
Pub Date : 2024-04-16 DOI: 10.1002/1438-390x.12187
Hiroyuki Matsuda, Akira Watanabe
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引用次数: 0
Contributions and problems of mathematical models in COVID‐19 prevention in Japan 数学模型在日本预防 COVID-19 方面的贡献和问题
Pub Date : 2024-04-04 DOI: 10.1002/1438-390x.12185
Masayuki Kakehashi, Hiroyuki Matsuda
This article reviews the essential role of mathematical models in understanding and combatting the pandemic of novel coronaviruses, in particular focusing the advance in the use of mathematical models in disease control in Japan. Highlighting the integral role of mathematical models in public health, the article introduces a model that factors in the heterogeneity of infectious contacts, concentrating on the effectiveness of testing and isolation, alongside a model that involves economic losses. The models exhibit how, given such heterogeneity, milder behavioral restrictions can still achieve suppression, rigorous testing and isolation can effectively curb the spread, and containment measures can mitigate economic losses. These models aid in grasping the complicated dynamics of disease transmission and optimizing interventions. The knowledge of population ecology is also considered effective for public health in statistical analysis, organizing concepts using dynamic mathematical models, which lead to policy proposals and deepen understanding. Evolution theory may help the understanding of virulence subject to change. However, effective prevention necessitates not only models but also the practical implementation of efficacious measures. The cooperation of various disciplines is particularly crucial in achieving a balance between health measures, economic interests, and human rights. Moreover, the article acknowledges the limitations of models and underscores the significance of real‐world execution. Overall, the article advocates for a broader outlook to tackle future pandemics and related challenges, underscoring the importance of ongoing academic cooperation and global governance to effectively address emerging infectious diseases and their far‐reaching implications.
本文回顾了数学模型在理解和抗击新型冠状病毒大流行中的重要作用,尤其重点介绍了日本在使用数学模型控制疾病方面取得的进展。文章强调了数学模型在公共卫生中不可或缺的作用,介绍了一个考虑到感染接触者异质性的模型,重点关注检测和隔离的有效性,以及一个涉及经济损失的模型。这些模型展示了在这种异质性的情况下,较温和的行为限制如何仍能实现抑制,严格的检测和隔离如何有效遏制传播,以及遏制措施如何减轻经济损失。这些模型有助于把握疾病传播的复杂动态并优化干预措施。人口生态学知识也被认为是公共卫生统计分析的有效方法,它利用动态数学模型组织概念,从而提出政策建议并加深理解。进化论可能有助于理解病毒的变化。然而,有效的预防不仅需要模型,还需要切实执行有效的措施。各学科的合作对于实现健康措施、经济利益和人权之间的平衡尤为重要。此外,文章承认模型的局限性,并强调了实际执行的重要性。总之,文章主张以更广阔的视野应对未来的流行病和相关挑战,强调持续的学术合作和全球治理对于有效应对新出现的传染病及其深远影响的重要性。
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引用次数: 0
A comparative study of population management approaches in infectious disease control, population management of fisheries and wildlife, and integrated pest management in agriculture 传染病控制、渔业和野生动物种群管理以及农业虫害综合防治中的种群管理方法比较研究
Pub Date : 2024-03-22 DOI: 10.1002/1438-390x.12181
Hiroyuki Matsuda, Akira Watanabe
This paper provides a comprehensive study on the similarities and differences between infectious disease control in public health and various population management approaches, including fisheries resource management, wildlife management, and integrated pest management in agriculture. We aim to identify key strategies, and potential synergies that can contribute to the development of population management strategies within these domains. For example, scientists provide options but leave policy making itself to stakeholders, choose monitoring indicators with as little time lag or change thresholds between increasing and decreasing phases to account for time lag, consider economic feasibility, and clarify accountability, which are common to all fields. There are many elements to incorporate methods from other fields while making use of the accumulation gained in each field.
本文全面研究了公共卫生中的传染病控制与各种人口管理方法(包括渔业资源管理、野生动物管理和农业害虫综合防治)之间的异同。我们旨在确定关键战略,以及有助于在这些领域内制定种群管理战略的潜在协同作用。例如,科学家提供备选方案,但将政策制定本身留给利益相关者,选择时滞尽可能小的监测指标,或在增加和减少阶段之间改变阈值以考虑时滞,考虑经济可行性,并明确责任,这些是所有领域的共同点。在利用各领域积累的同时,还可以吸收其他领域的方法,这其中有很多要素。
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引用次数: 0
First density estimates for a recovering bobcat population in Ohio using DNA from scat 利用粪便中的 DNA 首次估算俄亥俄州正在恢复的山猫种群密度
Pub Date : 2024-03-07 DOI: 10.1002/1438-390x.12184
Marissa A. Dyck, Genelle Uhrig, Stephen Spear, R. Iosif, V. Popescu
The recovery of mammalian species in the US Midwest through natural recolonization constitutes a conservation success story, yet management remains challenging due to many unknowns related to population dynamics and numeric trends. Abundance is a critical parameter for management decisions, and estimating the density and abundance of elusive species, such as terrestrial carnivores, remains challenging despite recent technological advances. In this study, we evaluated density and abundance of a recovering carnivore species, the bobcat (Lynx rufus) in two areas of Ohio using non‐invasive DNA from scat. The target areas in eastern and southern Ohio have been shown to have uneven dynamics and recolonization success and we expected that this would be reflected in differences in density and abundance. We collected 298 bobcat scats between July 2018 and April 2019 on 150 km of repeated transects. Of these, 102 scats were successfully genotyped, and 55 individuals were identified (33 in eastern Ohio and 22 in southern Ohio). Using Spatially Explicit Capture–Recapture models, we estimated 18.9 ± 4.1 and 10.9 ± 2.7 bobcats/100 km2 in eastern and southern Ohio study areas, respectively. Our results support prior telemetry data which indicated that bobcats in eastern Ohio had smaller home‐ranges than bobcats in southern Ohio, and thus could support a higher density of individuals. The higher densities were similar to other eastern US populations and are much higher than other Midwestern recovering populations. Our results provide a snapshot of the population status and can be used to determine sustainable management strategies for Ohio's bobcat population.
在美国中西部,哺乳动物物种通过自然重新定殖而得以恢复,这是一个成功的保护案例,但由于与种群动态和数量趋势相关的许多未知因素,管理仍然具有挑战性。丰度是管理决策的一个关键参数,尽管近年来技术不断进步,但对陆生食肉动物等难以捉摸的物种的密度和丰度进行估算仍然具有挑战性。在这项研究中,我们利用粪便中的非侵入性 DNA 评估了俄亥俄州两个地区正在恢复的食肉动物物种山猫(Lynx rufus)的密度和丰度。俄亥俄州东部和南部的目标地区已被证明具有不均衡的动态和重新定居的成功率,我们预计这将反映在密度和丰度的差异上。2018 年 7 月至 2019 年 4 月期间,我们在 150 公里的重复横断面上收集了 298 个山猫的猫粪。其中,102 只山猫的蜕皮被成功地进行了基因分型,55 只个体被确认(俄亥俄州东部 33 只,俄亥俄州南部 22 只)。利用空间明确捕获-再捕获模型,我们估计俄亥俄州东部和南部研究区域的山猫数量分别为 18.9 ± 4.1 和 10.9 ± 2.7 只/100 平方公里。我们的结果支持之前的遥测数据,这些数据表明俄亥俄州东部山猫的活动范围小于俄亥俄州南部山猫的活动范围,因此可以支持更高的个体密度。较高的密度与美国东部的其他种群相似,比中西部其他正在恢复的种群要高得多。我们的研究结果为山猫种群状况提供了一个快照,可用于确定俄亥俄州山猫种群的可持续管理策略。
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引用次数: 0
Detailed kinship estimation for detecting bias among breeding families in a reintroduced population of the endangered bagrid catfish Tachysurus ichikawai 用于检测濒危袋鲇 Tachysurus ichikawai 重引入种群中繁殖家族间偏差的详细亲缘关系估计值
Pub Date : 2024-03-06 DOI: 10.1002/1438-390x.12183
Hinano Mizuno, Kouji Nakayama, Tetsuya Akita, Yasuyuki Hashiguchi, Tomonori Osugi, Hirohiko Takeshima
In the context of initiatives focused on captive breeding and reintroduction of endangered animal species, it is crucial to minimize any bias in reproductive success during the reintroduction phase in order to preserve genetic diversity. One population of Tachysurus ichikawai, a critically endangered bagrid catfish endemic to Japan, faces a threat from the construction of a dam. To address this, a captive breeding program followed by translocation is being implemented. Multiple breeding families are involved in this process; however, if there is a bias in reproductive success among them after release, it will result in a decline in genetic diversity. To ascertain potential biases of reproductive success among released individuals, we attempted to identify the familial lineage of individuals born at the release site. Due to the unavailability of samples from the released individuals themselves, we reconstructed the pedigree of three generations using distant kinship relationships, such as grandparent–grandchild and uncle–aunt–nephew–niece relationships, with data of 2230–5674 single‐nucleotide polymorphisms obtained from whole genome re‐sequence, and three different software. Our findings indicate no bias between lineages in the first year after reintroduction, but a significant bias in the second year, emphasizing the need for continuous management and monitoring of reintroduced populations. This study demonstrates that monitoring kinship after reintroduction can correct lineage bias, which is critical for the prompt restoration of genetic diversity.
在对濒危动物物种进行人工繁殖和重新引入的过程中,最大限度地减少重新引入阶段的繁殖成功率偏差以保护遗传多样性至关重要。日本特有的极度濒危袋鲇 Tachysurus ichikawai 的一个种群面临着修建水坝的威胁。为解决这一问题,正在实施一项人工繁殖计划,然后进行迁移。在此过程中会涉及多个繁殖家庭;但是,如果在释放后它们之间的繁殖成功率存在偏差,就会导致遗传多样性下降。为了确定放归个体的繁殖成功率可能存在的偏差,我们试图确定在放归地点出生的个体的家系。由于无法获得放归个体本身的样本,我们利用远亲关系,如祖父母-孙子女、叔-舅-姨-侄-外甥-侄女关系,通过全基因组重测序获得的 2230-5674 个单核苷酸多态性数据,并使用三种不同的软件,重建了三代人的血统。我们的研究结果表明,在重新引入后的第一年,各系之间没有偏差,但在第二年出现了明显的偏差,这强调了对重新引入的种群进行持续管理和监测的必要性。这项研究表明,在重新引入后监测亲缘关系可以纠正世系偏差,这对迅速恢复遗传多样性至关重要。
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引用次数: 0
Anthropogenic and climatic drivers of population densities in an African savanna ungulate community 非洲热带草原有蹄类动物群落种群密度的人为和气候驱动因素
Pub Date : 2024-03-01 DOI: 10.1002/1438-390x.12182
Lukas Bierhoff, M. Bond, A. Ozgul, Derek E. Lee
Many ungulate species in Africa range in habitats that vary in type and quality over space and time, but ongoing environmental change is substantially altering their habitats. Identifying key environmental variables that regulate ungulate population densities can guide management actions for effective conservation. We studied the local population density responses of a community of sympatric ungulate species in the Tarangire Ecosystem of northern Tanzania, to a suite of environmental factors that vary over space and time, to quantify population trends, determine the primary environmental correlates of densities, and identify covariation in densities among species. We estimated seasonal densities of five commonly detected species (impala, dik–dik, Grant's gazelle, eland, and waterbuck) based on 7 years of distance‐sampling data from 41 replicate surveys of 237 line transects. We systematically analyzed the effects of spatial, seasonal, and annual environmental covariates on variation in transect species‐specific densities across space and time. Large fluctuations in climatic factors mediated highly synchronous temporal density variation among all species. We documented more spatial than temporal variation in four of the five species, suggesting that spatial heterogeneity may provide some buffer against temporal variation in the environment. Protection of sufficient habitats and water sources should allow ungulates to respond to a temporally changing world by moving across space. Further, among‐species covariation patterns identified two potential ungulate guilds (impala—dik–dik—waterbuck; eland—Grant's gazelle) that should aid in developing efficient and coordinated management actions.
非洲许多有蹄类动物的栖息地类型和质量随时间和空间而变化,但持续的环境变化正在极大地改变它们的栖息地。确定调节蹄类动物种群密度的关键环境变量可以指导管理行动,从而有效地保护蹄类动物。我们研究了坦桑尼亚北部塔兰吉雷生态系统中一个同域蹄类动物群落的当地种群密度对一系列随时间和空间变化的环境因素的响应,以量化种群趋势,确定密度的主要环境相关因素,并识别物种间密度的共变。我们根据 7 年来 41 次重复调查 237 条线路横断面的距离采样数据,估算了 5 种常见物种(黑斑羚、羚牛、格兰特瞪羚、伊兰特和水鹿)的季节性密度。我们系统分析了空间、季节和年度环境协变量对横断面物种特异性密度跨时空变化的影响。气候因素的大幅波动介导了所有物种之间高度同步的时间密度变化。在五个物种中,我们发现四个物种的空间变化大于时间变化,这表明空间异质性可能对环境的时间变化提供了一定的缓冲作用。保护足够的栖息地和水源应使有蹄类动物能够通过跨空间移动来应对时间上不断变化的世界。此外,物种间的共变模式确定了两个潜在的有蹄类动物行会(黑斑羚-羚牛-水鸭;羚牛-格兰瞪羚),这些行会应有助于制定高效、协调的管理行动。
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引用次数: 0
A model of coffee berry borer population growth and susceptibility to control by birds 咖啡浆果螟种群增长和易受鸟类控制的模型
Pub Date : 2024-02-14 DOI: 10.1002/1438-390x.12180
Kaitlin R. Muccio, Elizabeth E. Crone, J. M. Reed
Insectivorous birds can provide ecological and economic services by decreasing pest populations in agricultural systems, but the magnitude of effect is often debated. We modeled the capacity for birds to suppress pest population growth using a common tropical coffee pest, the coffee berry borer (CBB) (Hypothenemus hampei) as a study system. Previous field experiments show that birds play a role in suppressing CBB infestations through predation, but the degree to which birds can suppress population growth enough to control infestations is unknown since CBB are only vulnerable to predators when gravid females disperse. Using previously published data on CBB life‐stage survivability, we constructed a female‐only, daily time‐step, deterministic Leslie matrix and projected CBB population growth for a single breeding season. Our goal was to assess the plausibility of CBB suppression by birds as a function of avian energy requirements, reported avian densities on coffee farms, prey composition of avian diets, estimated a caloric value of CBB, and the initial starting population size. Our model showed CBB population growth became exponential (λdaily = 1.042) and that at low, but not medium or high population sizes, were birds able to reduce population growth by 50%. In general, birds exert predation pressure on insect populations, but the ability to control infestations is complex, and is likely dependent on the initial CBB population size.
食虫鸟类可以通过减少农业系统中的害虫数量来提供生态和经济服务,但其效果的大小往往存在争议。我们以常见的热带咖啡害虫--咖啡浆果螟(CBB)(Hypothenemus hampei)为研究对象,模拟了鸟类抑制害虫种群增长的能力。以前的田间试验表明,鸟类通过捕食在抑制咖啡蓟马虫害方面发挥了作用,但鸟类能在多大程度上抑制虫害种群增长以控制虫害还不得而知,因为咖啡蓟马只有在怀孕雌虫分散时才容易受到捕食者的攻击。利用之前公布的 CBB 生命阶段存活率数据,我们构建了一个仅有雌性、日时间步长、确定性的莱斯利矩阵,并预测了单个繁殖季节的 CBB 种群增长。我们的目标是根据鸟类的能量需求、咖啡农场的鸟类密度、鸟类食物中的猎物成分、CBB 的热量估计值以及初始种群数量,评估鸟类抑制 CBB 的合理性。我们的模型显示,CBB的种群数量呈指数增长(λdaily = 1.042),在种群数量较低时,鸟类能将种群数量的增长降低50%,而在种群数量中等或较高时则不能。一般来说,鸟类会对昆虫种群施加捕食压力,但控制虫害的能力是复杂的,很可能取决于最初的 CBB 种群数量。
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引用次数: 0
A model of coffee berry borer population growth and susceptibility to control by birds 咖啡浆果螟种群增长和易受鸟类控制的模型
Pub Date : 2024-02-14 DOI: 10.1002/1438-390x.12180
Kaitlin R. Muccio, Elizabeth E. Crone, J. M. Reed
Insectivorous birds can provide ecological and economic services by decreasing pest populations in agricultural systems, but the magnitude of effect is often debated. We modeled the capacity for birds to suppress pest population growth using a common tropical coffee pest, the coffee berry borer (CBB) (Hypothenemus hampei) as a study system. Previous field experiments show that birds play a role in suppressing CBB infestations through predation, but the degree to which birds can suppress population growth enough to control infestations is unknown since CBB are only vulnerable to predators when gravid females disperse. Using previously published data on CBB life‐stage survivability, we constructed a female‐only, daily time‐step, deterministic Leslie matrix and projected CBB population growth for a single breeding season. Our goal was to assess the plausibility of CBB suppression by birds as a function of avian energy requirements, reported avian densities on coffee farms, prey composition of avian diets, estimated a caloric value of CBB, and the initial starting population size. Our model showed CBB population growth became exponential (λdaily = 1.042) and that at low, but not medium or high population sizes, were birds able to reduce population growth by 50%. In general, birds exert predation pressure on insect populations, but the ability to control infestations is complex, and is likely dependent on the initial CBB population size.
食虫鸟类可以通过减少农业系统中的害虫数量来提供生态和经济服务,但其效果的大小往往存在争议。我们以常见的热带咖啡害虫--咖啡浆果螟(CBB)(Hypothenemus hampei)为研究对象,模拟了鸟类抑制害虫种群增长的能力。以前的田间试验表明,鸟类通过捕食在抑制咖啡蓟马虫害方面发挥了作用,但鸟类能在多大程度上抑制虫害种群增长以控制虫害还不得而知,因为咖啡蓟马只有在怀孕雌虫分散时才容易受到捕食者的攻击。利用之前公布的 CBB 生命阶段存活率数据,我们构建了一个仅有雌性、日时间步长、确定性的莱斯利矩阵,并预测了单个繁殖季节的 CBB 种群增长。我们的目标是根据鸟类的能量需求、咖啡农场的鸟类密度、鸟类食物中的猎物成分、CBB 的热量估计值以及初始种群数量,评估鸟类抑制 CBB 的合理性。我们的模型显示,CBB的种群数量呈指数增长(λdaily = 1.042),在种群数量较低时,鸟类能将种群数量的增长降低50%,而在种群数量中等或较高时则不能。一般来说,鸟类会对昆虫种群施加捕食压力,但控制虫害的能力是复杂的,很可能取决于最初的 CBB 种群数量。
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引用次数: 0
Reconstructing mountain goat history in the Olympic Mountains, USA 重建美国奥林匹克山脉的山羊历史
Pub Date : 2024-02-13 DOI: 10.1002/1438-390x.12179
Melissa M. Oscarson, E. Landguth, David O. Wallin
Between 1925 and 1930, 11 or 12 non‐native mountain goats (Oreamnos americanus) were translocated from Alaska and British Columbia to the foothills of the Olympic Range. By 1970, descendants of these goats had colonized the entire range and concerns about the management of this introduced species developed as damage to alpine soil and vegetation occurred. A series of removals reduced the population from 1175 in 1983 to 389 by 1990, eventually growing to 584 in 2016. We used demographic and genetic data to parameterize a population genetics individual‐based simulation model of the Olympic Range mountain goats. We calibrated the model to replicate the population trajectory for Olympic mountain goats from establishment in the 1920s through the 1983 first census. As expected, modeled population dynamics from 1928 to 1983 mimicked parameter initialization from expanding populations. However, simulated heterozygosity did not align with observations, suggesting a process not accounted for within the simulation model, such as a bottleneck or founder effect. Sensitivity analyses showed changes in annual reproductive rate, juvenile mortality, and adult female mortality influencing population trajectories, but variation in male mortality revealed no changes. Evaluating the population dynamics of the model after removals showed that approximately 80% of the total animals removed during the 1980s needed to be female in order for the observed population estimates to occur. This model has the potential to be used more widely with established or introduced mountain goat populations, as well as to provide an approach for studying other introduced species and their population dynamics.
1925 年至 1930 年间,11 或 12 只非本族山羊(Oreamnos americanus)从阿拉斯加和不列颠哥伦比亚省迁移到奥林匹克山脉的山麓。到 1970 年,这些山羊的后代已经在整个山脉定居,由于高山土壤和植被遭到破坏,人们开始关注如何管理这种外来物种。一系列的移除行动使种群数量从 1983 年的 1175 只减少到 1990 年的 389 只,最终在 2016 年增加到 584 只。我们利用人口和遗传数据对奥林匹克山脉山羊的种群遗传学个体模拟模型进行了参数化。我们对模型进行了校准,以复制奥林匹克山羊从 20 世纪 20 年代建立到 1983 年第一次人口普查期间的种群轨迹。不出所料,从 1928 年到 1983 年的模型种群动态模拟了不断扩大的种群的参数初始化。然而,模拟的杂合度与观测结果并不一致,这表明模拟模型中没有考虑瓶颈或创始者效应等过程。敏感性分析表明,年繁殖率、幼鱼死亡率和成年雌鱼死亡率的变化会影响种群轨迹,但雄鱼死亡率的变化没有影响种群轨迹。对移除后模型的种群动态进行评估后发现,20 世纪 80 年代移除的动物总数中约有 80% 为雌性,这样才能达到观测到的种群估计值。该模型有可能被更广泛地用于已建立或引进的山羊种群,并为研究其他引进物种及其种群动态提供一种方法。
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引用次数: 0
Reconstructing mountain goat history in the Olympic Mountains, USA 重建美国奥林匹克山脉的山羊历史
Pub Date : 2024-02-13 DOI: 10.1002/1438-390x.12179
Melissa M. Oscarson, E. Landguth, David O. Wallin
Between 1925 and 1930, 11 or 12 non‐native mountain goats (Oreamnos americanus) were translocated from Alaska and British Columbia to the foothills of the Olympic Range. By 1970, descendants of these goats had colonized the entire range and concerns about the management of this introduced species developed as damage to alpine soil and vegetation occurred. A series of removals reduced the population from 1175 in 1983 to 389 by 1990, eventually growing to 584 in 2016. We used demographic and genetic data to parameterize a population genetics individual‐based simulation model of the Olympic Range mountain goats. We calibrated the model to replicate the population trajectory for Olympic mountain goats from establishment in the 1920s through the 1983 first census. As expected, modeled population dynamics from 1928 to 1983 mimicked parameter initialization from expanding populations. However, simulated heterozygosity did not align with observations, suggesting a process not accounted for within the simulation model, such as a bottleneck or founder effect. Sensitivity analyses showed changes in annual reproductive rate, juvenile mortality, and adult female mortality influencing population trajectories, but variation in male mortality revealed no changes. Evaluating the population dynamics of the model after removals showed that approximately 80% of the total animals removed during the 1980s needed to be female in order for the observed population estimates to occur. This model has the potential to be used more widely with established or introduced mountain goat populations, as well as to provide an approach for studying other introduced species and their population dynamics.
1925 年至 1930 年间,11 或 12 只非本族山羊(Oreamnos americanus)从阿拉斯加和不列颠哥伦比亚省迁移到奥林匹克山脉的山麓。到 1970 年,这些山羊的后代已经在整个山脉定居,由于高山土壤和植被遭到破坏,人们开始关注如何管理这种外来物种。一系列的移除行动使种群数量从 1983 年的 1175 只减少到 1990 年的 389 只,最终在 2016 年增加到 584 只。我们利用人口和遗传数据对奥林匹克山脉山羊的种群遗传学个体模拟模型进行了参数化。我们对模型进行了校准,以复制奥林匹克山羊从 20 世纪 20 年代建立到 1983 年第一次人口普查期间的种群轨迹。不出所料,从 1928 年到 1983 年的模型种群动态模拟了不断扩大的种群的参数初始化。然而,模拟的杂合度与观测结果并不一致,这表明模拟模型中没有考虑瓶颈或创始者效应等过程。敏感性分析表明,年繁殖率、幼鱼死亡率和成年雌鱼死亡率的变化会影响种群轨迹,但雄鱼死亡率的变化没有影响种群轨迹。对移除后模型的种群动态进行评估后发现,20 世纪 80 年代移除的动物总数中约有 80% 为雌性,这样才能达到观测到的种群估计值。该模型有可能被更广泛地用于已建立或引进的山羊种群,并为研究其他引进物种及其种群动态提供一种方法。
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引用次数: 0
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Population Ecology
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