Pub Date : 2024-06-01DOI: 10.1016/j.csbj.2024.06.005
Ioannis Vardaxis, Boris Simovski, Irantzu Anzar, R. Stratford, Trevor Clancy
{"title":"Deep learning of antibody epitopes using positional permutation vectors","authors":"Ioannis Vardaxis, Boris Simovski, Irantzu Anzar, R. Stratford, Trevor Clancy","doi":"10.1016/j.csbj.2024.06.005","DOIUrl":"https://doi.org/10.1016/j.csbj.2024.06.005","url":null,"abstract":"","PeriodicalId":505673,"journal":{"name":"Computational and Structural Biotechnology Journal","volume":"4 7","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141391609","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-01DOI: 10.1016/j.csbj.2024.06.011
M. Chetta, M. Tarsitano, M. Rivieccio, M. Oro, A.L. Cammarota, M. De Marco, L. Marzullo, A. Rosati, N. Bukvic
{"title":"A Copernican Revolution of Multigenic Analysis: A Retrospective Study on Clinical Exome Sequencing in Unclear Genetic Disorders","authors":"M. Chetta, M. Tarsitano, M. Rivieccio, M. Oro, A.L. Cammarota, M. De Marco, L. Marzullo, A. Rosati, N. Bukvic","doi":"10.1016/j.csbj.2024.06.011","DOIUrl":"https://doi.org/10.1016/j.csbj.2024.06.011","url":null,"abstract":"","PeriodicalId":505673,"journal":{"name":"Computational and Structural Biotechnology Journal","volume":"11 5","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141403410","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-01DOI: 10.1016/j.csbj.2024.06.010
Ahmad Elbahnsi, B. Dudas, Salvatore Cisternino, Xavier Declèves, Maria A. Miteva
{"title":"Mechanistic insights into P-glycoprotein ligand transport and inhibition revealed by enhanced molecular dynamics simulations","authors":"Ahmad Elbahnsi, B. Dudas, Salvatore Cisternino, Xavier Declèves, Maria A. Miteva","doi":"10.1016/j.csbj.2024.06.010","DOIUrl":"https://doi.org/10.1016/j.csbj.2024.06.010","url":null,"abstract":"","PeriodicalId":505673,"journal":{"name":"Computational and Structural Biotechnology Journal","volume":"10 17","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141394784","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-01DOI: 10.1016/j.csbj.2024.05.030
N. Hauptman, Jože Pižem, D. J. Skok
{"title":"AmiCa: atlas of miRNA-gene correlations in cancer","authors":"N. Hauptman, Jože Pižem, D. J. Skok","doi":"10.1016/j.csbj.2024.05.030","DOIUrl":"https://doi.org/10.1016/j.csbj.2024.05.030","url":null,"abstract":"","PeriodicalId":505673,"journal":{"name":"Computational and Structural Biotechnology Journal","volume":" 74","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141131977","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-01DOI: 10.1016/j.csbj.2024.05.027
Wannarat Chanket, Methinee Pipatthana, Apiwat Sangphukieo, P. Harnvoravongchai, S. Chankhamhaengdecha, T. Janvilisri, M. Phanchana
{"title":"The complete catalog of antimicrobial resistance secondary active transporters in C. difficile: evolution and drug resistance perspective","authors":"Wannarat Chanket, Methinee Pipatthana, Apiwat Sangphukieo, P. Harnvoravongchai, S. Chankhamhaengdecha, T. Janvilisri, M. Phanchana","doi":"10.1016/j.csbj.2024.05.027","DOIUrl":"https://doi.org/10.1016/j.csbj.2024.05.027","url":null,"abstract":"","PeriodicalId":505673,"journal":{"name":"Computational and Structural Biotechnology Journal","volume":"151 S622","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141133685","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-01DOI: 10.1016/j.csbj.2024.05.001
L. van den Driest, Patricia Kelly, Alan Marshall, Caroline H Johnson, Jessica Lasky-Su, Alison Lannigan, Z. Rattray, Nicholas J W Rattray
{"title":"A Gap Analysis of UK Biobank Publications Reveals SNPs Associated with Intrinsic Subtypes of Breast Cancer.","authors":"L. van den Driest, Patricia Kelly, Alan Marshall, Caroline H Johnson, Jessica Lasky-Su, Alison Lannigan, Z. Rattray, Nicholas J W Rattray","doi":"10.1016/j.csbj.2024.05.001","DOIUrl":"https://doi.org/10.1016/j.csbj.2024.05.001","url":null,"abstract":"","PeriodicalId":505673,"journal":{"name":"Computational and Structural Biotechnology Journal","volume":"12 8","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141049763","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-01DOI: 10.1016/j.csbj.2024.05.035
Moritz Weckbecker, Aleksandar Anžel, Zewen Yang, Georges Hattab
{"title":"Interpretable Molecular Encodings and Representations for Machine Learning Tasks","authors":"Moritz Weckbecker, Aleksandar Anžel, Zewen Yang, Georges Hattab","doi":"10.1016/j.csbj.2024.05.035","DOIUrl":"https://doi.org/10.1016/j.csbj.2024.05.035","url":null,"abstract":"","PeriodicalId":505673,"journal":{"name":"Computational and Structural Biotechnology Journal","volume":"7 11","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141136392","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-01DOI: 10.1016/j.csbj.2024.05.021
Jing Li, Ying Tang, Fei Long, Luyao Tian, Ao Tang, LiHui Ding, Juan Chen, Mingwei Liu
{"title":"Integrating bulk RNA-seq and scRNA-seq analyses revealed the function and clinical value of thrombospondins in colon cancer","authors":"Jing Li, Ying Tang, Fei Long, Luyao Tian, Ao Tang, LiHui Ding, Juan Chen, Mingwei Liu","doi":"10.1016/j.csbj.2024.05.021","DOIUrl":"https://doi.org/10.1016/j.csbj.2024.05.021","url":null,"abstract":"","PeriodicalId":505673,"journal":{"name":"Computational and Structural Biotechnology Journal","volume":"20 11","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141024144","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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