Pub Date : 2024-05-01DOI: 10.1016/j.csbj.2024.05.040
Edoardo Bizzotto, Guido Zampieri, Laura Treu, Pasquale Filannino, Raffaella Di Cagno, Stefano Campanaro
{"title":"Classification of bioactive peptides: a systematic benchmark of models and encodings","authors":"Edoardo Bizzotto, Guido Zampieri, Laura Treu, Pasquale Filannino, Raffaella Di Cagno, Stefano Campanaro","doi":"10.1016/j.csbj.2024.05.040","DOIUrl":"https://doi.org/10.1016/j.csbj.2024.05.040","url":null,"abstract":"","PeriodicalId":505673,"journal":{"name":"Computational and Structural Biotechnology Journal","volume":"167 3","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141133654","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-01DOI: 10.1016/j.csbj.2024.05.041
Georgina B Armstrong, Vidhi Shah, Paula Sanches, Mitul Patel, Ricky Casey, Craig J Jamieson, Glenn A Burley, William J Lewis, Zahra Rattray
{"title":"A framework for the biophysical screening of antibody mutations targeting solvent-accessible hydrophobic and electrostatic patches for enhanced viscosity profiles","authors":"Georgina B Armstrong, Vidhi Shah, Paula Sanches, Mitul Patel, Ricky Casey, Craig J Jamieson, Glenn A Burley, William J Lewis, Zahra Rattray","doi":"10.1016/j.csbj.2024.05.041","DOIUrl":"https://doi.org/10.1016/j.csbj.2024.05.041","url":null,"abstract":"","PeriodicalId":505673,"journal":{"name":"Computational and Structural Biotechnology Journal","volume":" 98","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141132503","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-01DOI: 10.1016/j.csbj.2024.05.034
Guihua Chen, Yi Wang, Xiang Wang
{"title":"Insulin-related traits and prostate cancer: a Mendelian randomization study","authors":"Guihua Chen, Yi Wang, Xiang Wang","doi":"10.1016/j.csbj.2024.05.034","DOIUrl":"https://doi.org/10.1016/j.csbj.2024.05.034","url":null,"abstract":"","PeriodicalId":505673,"journal":{"name":"Computational and Structural Biotechnology Journal","volume":"12 2","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141137706","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-01DOI: 10.1016/j.csbj.2024.05.012
Jingwei Zhang, Jie Wen, Ziyu Dai, Hao Zhang, Nan Zhang, Ruoyan Lei, Zhixiong Liu, Luo Peng, Quan Cheng
{"title":"Causal association and shared genetics between telomere length and COVID-19 outcomes: new evidence from the latest large-scale summary statistics","authors":"Jingwei Zhang, Jie Wen, Ziyu Dai, Hao Zhang, Nan Zhang, Ruoyan Lei, Zhixiong Liu, Luo Peng, Quan Cheng","doi":"10.1016/j.csbj.2024.05.012","DOIUrl":"https://doi.org/10.1016/j.csbj.2024.05.012","url":null,"abstract":"","PeriodicalId":505673,"journal":{"name":"Computational and Structural Biotechnology Journal","volume":"41 10","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141030003","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-01DOI: 10.1016/j.csbj.2024.05.032
Ana Julia Ferreira Lima, K. Hajdu, Luiza Abdo, L. R. Batista-Silva, Clara de Oliveira Andrade, E. Correia, E. Aragão, Martín Bonamino, M. Lourenzoni
{"title":"In silico and in vivo analysis reveal impact of c-Myc tag in FMC63 scFv-CD19 protein interface and CAR-T cell efficacy","authors":"Ana Julia Ferreira Lima, K. Hajdu, Luiza Abdo, L. R. Batista-Silva, Clara de Oliveira Andrade, E. Correia, E. Aragão, Martín Bonamino, M. Lourenzoni","doi":"10.1016/j.csbj.2024.05.032","DOIUrl":"https://doi.org/10.1016/j.csbj.2024.05.032","url":null,"abstract":"","PeriodicalId":505673,"journal":{"name":"Computational and Structural Biotechnology Journal","volume":"22 3‐4","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141141375","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-02-01DOI: 10.1016/j.csbj.2024.02.002
Jie Li, Tian Yu, Juan Sun, M. Ma, Zicheng Zheng, Weiming Kang, Xin Ye
{"title":"Comprehensive integration of single-cell RNA and transcriptome RNA sequencing to establish a pyroptosis-related signature for improving prognostic prediction of gastric cancer","authors":"Jie Li, Tian Yu, Juan Sun, M. Ma, Zicheng Zheng, Weiming Kang, Xin Ye","doi":"10.1016/j.csbj.2024.02.002","DOIUrl":"https://doi.org/10.1016/j.csbj.2024.02.002","url":null,"abstract":"","PeriodicalId":505673,"journal":{"name":"Computational and Structural Biotechnology Journal","volume":"92 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139819496","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-02-01DOI: 10.1016/j.csbj.2024.02.005
S. Fan, Xudong Lü, Xiyu Wei, Ruijie Lü, Cuiyue Feng, Yuanyuan Jin, Maocai Yan, Zhaoyong Yang
{"title":"Computational Design of α-amylase from Bacillus licheniformis to Increase Its Activity and Stability at High Temperatures","authors":"S. Fan, Xudong Lü, Xiyu Wei, Ruijie Lü, Cuiyue Feng, Yuanyuan Jin, Maocai Yan, Zhaoyong Yang","doi":"10.1016/j.csbj.2024.02.005","DOIUrl":"https://doi.org/10.1016/j.csbj.2024.02.005","url":null,"abstract":"","PeriodicalId":505673,"journal":{"name":"Computational and Structural Biotechnology Journal","volume":"21 22","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139822455","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-02-01DOI: 10.1016/j.csbj.2024.02.008
Roberto Bello-Madruga, Marc Torrent Burgas
{"title":"The Limits of Prediction: Why Intrinsically Disordered Regions Challenge Our Understanding of Antimicrobial Peptides","authors":"Roberto Bello-Madruga, Marc Torrent Burgas","doi":"10.1016/j.csbj.2024.02.008","DOIUrl":"https://doi.org/10.1016/j.csbj.2024.02.008","url":null,"abstract":"","PeriodicalId":505673,"journal":{"name":"Computational and Structural Biotechnology Journal","volume":"74 11","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139873819","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-02-01DOI: 10.1016/j.csbj.2024.02.003
Xiao Xiao, T. X. Trinh, Zayakhuu Gerelkhuu, Eunyong Ha, Tae Hyun Yoon
{"title":"Automated Machine Learning in Nanotoxicity Assessment: A Comparative Study of Predictive Model Performance","authors":"Xiao Xiao, T. X. Trinh, Zayakhuu Gerelkhuu, Eunyong Ha, Tae Hyun Yoon","doi":"10.1016/j.csbj.2024.02.003","DOIUrl":"https://doi.org/10.1016/j.csbj.2024.02.003","url":null,"abstract":"","PeriodicalId":505673,"journal":{"name":"Computational and Structural Biotechnology Journal","volume":"41 5","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139818039","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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