Pub Date : 2024-04-10DOI: 10.1016/j.diff.2024.100780
Jennelle Smith , Loydie A. Jerome-Majewska
Fibroblast Growth Factor 6 (FGF6), also referred to as HST2 or HBGF6, is a member of the Fibroblast Growth Factor (FGF), the Heparin Binding Growth Factor (HBGF) and the Heparin Binding Secretory Transforming Gene (HST) families. The genomic and protein structure of FGF6 is highly conserved among varied species, as is its expression in muscle and muscle progenitor cells. Like other members of the FGF family, FGF6 regulates cell proliferation, differentiation, and migration. Specifically, it plays key roles in myogenesis and muscular regeneration, angiogenesis, along with iron transport and lipid metabolism. Similar to others from the FGF family, FGF6 also possesses oncogenic transforming activity, and as such is implicated in a variety of cancers.
{"title":"Fibroblast Growth Factor 6","authors":"Jennelle Smith , Loydie A. Jerome-Majewska","doi":"10.1016/j.diff.2024.100780","DOIUrl":"https://doi.org/10.1016/j.diff.2024.100780","url":null,"abstract":"<div><p>Fibroblast Growth Factor 6 (<em>FGF6</em>), also referred to as <em>HST2</em> or <em>HBGF6</em>, is a member of the Fibroblast Growth Factor (FGF), the Heparin Binding Growth Factor (HBGF) and the Heparin Binding Secretory Transforming Gene (HST) families. The genomic and protein structure of FGF6 is highly conserved among varied species, as is its expression in muscle and muscle progenitor cells. Like other members of the FGF family, <em>FGF6</em> regulates cell proliferation, differentiation, and migration. Specifically, it plays key roles in myogenesis and muscular regeneration, angiogenesis, along with iron transport and lipid metabolism. Similar to others from the FGF family, <em>FGF6</em> also possesses oncogenic transforming activity, and as such is implicated in a variety of cancers.</p></div>","PeriodicalId":50579,"journal":{"name":"Differentiation","volume":"137 ","pages":"Article 100780"},"PeriodicalIF":2.9,"publicationDate":"2024-04-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0301468124000367/pdfft?md5=cfbe55726f20d1e1270ee44f3c9772ab&pid=1-s2.0-S0301468124000367-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140552481","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-03-11DOI: 10.1016/j.diff.2024.100765
Michael A.Q. Martinez , Chris Z. Zhao , Frances E.Q. Moore , Callista Yee , Wan Zhang , Kang Shen , Benjamin L. Martin , David Q. Matus
The acquisition of the post-mitotic state is crucial for the execution of many terminally differentiated cell behaviors during organismal development. However, the mechanisms that maintain the post-mitotic state in this context remain poorly understood. To gain insight into these mechanisms, we used the genetically and visually accessible model of C. elegans anchor cell (AC) invasion into the vulval epithelium. The AC is a terminally differentiated uterine cell that normally exits the cell cycle and enters a post-mitotic state before initiating contact between the uterus and vulva through a cell invasion event. Here, we set out to identify the set of negative cell cycle regulators that maintain the AC in this post-mitotic, invasive state. Our findings revealed a critical role for CKI-1 (p21CIP1/p27KIP1) in redundantly maintaining the post-mitotic state of the AC, as loss of CKI-1 in combination with other negative cell cycle regulators—including CKI-2 (p21CIP1/p27KIP1), LIN-35 (pRb/p107/p130), FZR-1 (Cdh1/Hct1), and LIN-23 (β-TrCP)—resulted in proliferating ACs. Remarkably, time-lapse imaging revealed that these ACs retain their ability to invade. Upon examination of a node in the gene regulatory network controlling AC invasion, we determined that proliferating, invasive ACs do so by maintaining aspects of pro-invasive gene expression. We therefore report that the requirement for a post-mitotic state for invasive cell behavior can be bypassed following direct cell cycle perturbation.
获得后有丝分裂状态对生物体发育过程中许多终末分化细胞行为的执行至关重要。然而,在这种情况下维持后有丝分裂状态的机制仍然鲜为人知。为了深入了解这些机制,我们使用了锚细胞(AC)侵入外阴上皮细胞的遗传和可视模型。锚细胞是一种终末分化的子宫细胞,通常会退出细胞周期并进入后有丝分裂状态,通过细胞入侵事件启动子宫和外阴之间的接触。在这里,我们试图找出维持 AC 处于这种后有丝分裂和入侵状态的一系列细胞周期负调控因子。我们的发现揭示了 CKI-1(p21/p27)在冗余维持 AC 的后有丝分裂状态中的关键作用,因为 CKI-1 与其他细胞周期负调控因子(包括 CKI-2(p21/p27)、LIN-35(pRb/p107/p130)、FZR-1(Cdh1/Hct1)和 LIN-23 (β-TrCP))结合缺失会导致 AC 增殖。值得注意的是,延时成像显示这些 AC 保持了入侵能力。在对控制 AC 侵袭的基因调控网络中的一个节点进行检查后,我们确定增殖的侵袭性 AC 是通过维持促侵袭基因表达的某些方面来实现侵袭的。因此,我们报告说,直接扰乱细胞周期可以绕过入侵细胞行为对后有丝分裂状态的要求。
{"title":"Cell cycle perturbation uncouples mitotic progression and invasive behavior in a post-mitotic cell","authors":"Michael A.Q. Martinez , Chris Z. Zhao , Frances E.Q. Moore , Callista Yee , Wan Zhang , Kang Shen , Benjamin L. Martin , David Q. Matus","doi":"10.1016/j.diff.2024.100765","DOIUrl":"10.1016/j.diff.2024.100765","url":null,"abstract":"<div><p>The acquisition of the post-mitotic state is crucial for the execution of many terminally differentiated cell behaviors during organismal development. However, the mechanisms that maintain the post-mitotic state in this context remain poorly understood. To gain insight into these mechanisms, we used the genetically and visually accessible model of <em>C. elegans</em> anchor cell (AC) invasion into the vulval epithelium. The AC is a terminally differentiated uterine cell that normally exits the cell cycle and enters a post-mitotic state before initiating contact between the uterus and vulva through a cell invasion event. Here, we set out to identify the set of negative cell cycle regulators that maintain the AC in this post-mitotic, invasive state. Our findings revealed a critical role for CKI-1 (p21<sup>CIP1</sup>/p27<sup>KIP1</sup>) in redundantly maintaining the post-mitotic state of the AC, as loss of CKI-1 in combination with other negative cell cycle regulators—including CKI-2 (p21<sup>CIP1</sup>/p27<sup>KIP1</sup>), LIN-35 (pRb/p107/p130), FZR-1 (Cdh1/Hct1), and LIN-23 (β-TrCP)—resulted in proliferating ACs. Remarkably, time-lapse imaging revealed that these ACs retain their ability to invade. Upon examination of a node in the gene regulatory network controlling AC invasion, we determined that proliferating, invasive ACs do so by maintaining aspects of pro-invasive gene expression. We therefore report that the requirement for a post-mitotic state for invasive cell behavior can be bypassed following direct cell cycle perturbation.</p></div>","PeriodicalId":50579,"journal":{"name":"Differentiation","volume":"137 ","pages":"Article 100765"},"PeriodicalIF":2.9,"publicationDate":"2024-03-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140148321","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Collagen is a highly abundant protein in the extracellular matrix of humans and mammals, and it plays a critical role in maintaining the body's structural integrity. Type I collagen is the most prevalent collagen type and is essential for the structural integrity of various tissues. It is present in nearly all connective tissues and is the main constituent of the interstitial matrix. Mutations that affect collagen fiber formation, structure, and function can result in various bone pathologies, underscoring the significance of collagen in sustaining healthy bone tissue. Studies on type 1 collagen have revealed that mutations in its encoding gene can lead to diverse bone diseases, such as osteogenesis imperfecta, a disorder characterized by fragile bones that are susceptible to fractures. Knowledge of collagen's molecular structure, synthesis, assembly, and breakdown is vital for comprehending embryonic and foetal development and several aspects of human physiology. In this review, we summarize the structure, molecular biology of type 1 collagen, its biomineralization and pathologies affecting bone.
{"title":"Type 1 collagen: Synthesis, structure and key functions in bone mineralization","authors":"Vimalraj Selvaraj , Saravanan Sekaran , Anuradha Dhanasekaran , Sudha Warrier","doi":"10.1016/j.diff.2024.100757","DOIUrl":"10.1016/j.diff.2024.100757","url":null,"abstract":"<div><p>Collagen is a highly abundant protein in the extracellular matrix of humans and mammals, and it plays a critical role in maintaining the body's structural integrity. Type I collagen is the most prevalent collagen type and is essential for the structural integrity of various tissues. It is present in nearly all connective tissues and is the main constituent of the interstitial matrix. Mutations that affect collagen fiber formation, structure, and function can result in various bone pathologies, underscoring the significance of collagen in sustaining healthy bone tissue. Studies on type 1 collagen have revealed that mutations in its encoding gene can lead to diverse bone diseases, such as osteogenesis imperfecta, a disorder characterized by fragile bones that are susceptible to fractures. Knowledge of collagen's molecular structure, synthesis, assembly, and breakdown is vital for comprehending embryonic and foetal development and several aspects of human physiology. In this review, we summarize the structure, molecular biology of type 1 collagen, its biomineralization and pathologies affecting bone.</p></div>","PeriodicalId":50579,"journal":{"name":"Differentiation","volume":"136 ","pages":"Article 100757"},"PeriodicalIF":2.9,"publicationDate":"2024-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140009594","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Heart failure has become a major life-threatening cause affecting millions globally, characterized by the permanent loss of adult functional cardiomyocytes leading to fibrosis which ultimately deprives the heart of its functional efficacy. Here we investigated the reparative property of embryonic and adult epicardial cells towards cardiomyocyte differentiation under oxidative stress-induced conditions along with the identification of a possible molecular signaling pathway. Isolated epicardial cells from embryonic chick hearts subjected to oxidative stress and hypoxia induction. Initial assessment of successful injury induction reveals hypertrophy of isolated epicardial cells. Detailed marker gene expression analyses and inhibitor studies reveal Bone morphogenic protein (Bmp)2-Smad1/5/8 signaling dependent cardiomyocyte lineage specification via epithelial to mesenchymal transition (EMT) post-injury. EMT is further confirmed by increased proliferation, migration, and differentiation towards cardiomyocyte lineage. We have also established an in-vivo model in adult male rats using Isoproterenol. Successful oxidative stress-mediated injury induction in adult heart was marked by increased activated fibroblasts followed by apoptosis of adult cardiomyocytes. The detailed characterization of adult epicardial cells reveals similar findings to our avian in-vitro data. Both in-vitro and in-vivo results show a significant increase in the expression of cardiomyocyte specific markers indicative of lineage specificity and activation of epicardial cells post oxidative stress mediated injury. Our findings suggest an EMT-induced reactivation of epicardial cells and early cardiomyocyte lineage specification following oxidative stress in a Bmp2- Smad1/5/8 dependent manner. Overall, this regulatory mechanism of cardiomyocyte differentiation induced by oxidative stress may contribute to the field of cardiac repair and regenerative therapeutics.
{"title":"Oxidative-stress induced Bmp2-Smad1/5/8 signaling dependent differentiation of early cardiomyocytes from embryonic and adult epicardial cells","authors":"Madhurima Ghosh , Riffat Khanam , Arunima Sengupta , Santanu Chakraborty","doi":"10.1016/j.diff.2024.100756","DOIUrl":"10.1016/j.diff.2024.100756","url":null,"abstract":"<div><p>Heart failure has become a major life-threatening cause affecting millions globally, characterized by the permanent loss of adult functional cardiomyocytes leading to fibrosis which ultimately deprives the heart of its functional efficacy. Here we investigated the reparative property of embryonic and adult epicardial cells towards cardiomyocyte differentiation under oxidative stress-induced conditions along with the identification of a possible molecular signaling pathway. Isolated epicardial cells from embryonic chick hearts subjected to oxidative stress and hypoxia induction. Initial assessment of successful injury induction reveals hypertrophy of isolated epicardial cells. Detailed marker gene expression analyses and inhibitor studies reveal Bone morphogenic protein (Bmp)2-Smad1/5/8 signaling dependent cardiomyocyte lineage specification via epithelial to mesenchymal transition (EMT) post-injury. EMT is further confirmed by increased proliferation, migration, and differentiation towards cardiomyocyte lineage. We have also established an <em>in-vivo</em> model in adult male rats using Isoproterenol. Successful oxidative stress-mediated injury induction in adult heart was marked by increased activated fibroblasts followed by apoptosis of adult cardiomyocytes. The detailed characterization of adult epicardial cells reveals similar findings to our avian <em>in-vitro</em> data. Both <em>in-vitro</em> and <em>in-vivo</em> results show a significant increase in the expression of cardiomyocyte specific markers indicative of lineage specificity and activation of epicardial cells post oxidative stress mediated injury. Our findings suggest an EMT-induced reactivation of epicardial cells and early cardiomyocyte lineage specification following oxidative stress in a Bmp2- Smad1/5/8 dependent manner. Overall, this regulatory mechanism of cardiomyocyte differentiation induced by oxidative stress may contribute to the field of cardiac repair and regenerative therapeutics.</p></div>","PeriodicalId":50579,"journal":{"name":"Differentiation","volume":"136 ","pages":"Article 100756"},"PeriodicalIF":2.9,"publicationDate":"2024-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140054043","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-29DOI: 10.1016/j.diff.2024.100753
Virginia Papaioannou PhD
Genetic manipulation in mammals has progressed rapidly in the past decade with the advent of CRISPR-Cas gene editing tools, promising profound impacts on the understanding of human development, health and disease. However, many years of research in divergent fields of experimental embryology, genetics, reproduction, molecular biology and transgenic technology laid the groundwork and have played critical roles for this progress. This article details various threads of research and the central role of the laboratory mouse that came together in reaching this point, all from the perspective of a scientist whose research was deeply immersed in the field.
{"title":"The road to gene manipulation in the mouse: Jean Brachet Memorial Lecture of the International Society of Differentiation (delivered June 21, 2023 at Cold Spring Harbor Laboratory)","authors":"Virginia Papaioannou PhD","doi":"10.1016/j.diff.2024.100753","DOIUrl":"10.1016/j.diff.2024.100753","url":null,"abstract":"<div><p>Genetic manipulation in mammals has progressed rapidly in the past decade with the advent of CRISPR-Cas gene editing tools, promising profound impacts on the understanding of human development, health and disease. However, many years of research in divergent fields of experimental embryology, genetics, reproduction, molecular biology and transgenic technology laid the groundwork and have played critical roles for this progress. This article details various threads of research and the central role of the laboratory mouse that came together in reaching this point, all from the perspective of a scientist whose research was deeply immersed in the field.</p></div>","PeriodicalId":50579,"journal":{"name":"Differentiation","volume":"136 ","pages":"Article 100753"},"PeriodicalIF":2.9,"publicationDate":"2024-01-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139589058","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-14DOI: 10.1016/j.diff.2024.100746
Yuanxiang Zhao , Zachary Skovgaard , Qinyi Wang
Epigenetic regulation is a critical component of lineage determination. Adipogenesis is the process through which uncommitted stem cells or adipogenic precursor cells differentiate into adipocytes, the most abundant cell type of the adipose tissue. Studies examining chromatin modification during adipogenesis have provided further understanding of the molecular blueprint that controls the onset of adipogenic differentiation. Unlike histone acetylation, histone methylation has context dependent effects on the activity of a transcribed region of DNA, with individual or combined marks on different histone residues providing distinct signals for gene expression. Over half of the 42 histone methyltransferases identified in mammalian cells have been investigated in their role during adipogenesis, but across the large body of literature available, there is a lack of clarity over potential correlations or emerging patterns among the different players. In this review, we will summarize important findings from studies published in the past 15 years that have investigated the role of histone methyltransferases during adipogenesis, including both protein arginine methyltransferases (PRMTs) and lysine methyltransferases (KMTs). We further reveal that PRMT1/4/5, H3K4 KMTs (MLL1, MLL3, MLL4, SMYD2 and SET7/9) and H3K27 KMTs (EZH2) all play positive roles during adipogenesis, while PRMT6/7 and H3K9 KMTs (G9a, SUV39H1, SUV39H2, and SETDB1) play negative roles during adipogenesis.
表观遗传调控是血统决定的关键组成部分。脂肪生成是指未定型的干细胞或脂肪生成前体细胞分化成脂肪细胞的过程,脂肪细胞是脂肪组织中最丰富的细胞类型。对脂肪生成过程中染色质修饰的研究使人们进一步了解了控制脂肪生成分化开始的分子蓝图。与组蛋白乙酰化不同,组蛋白甲基化对 DNA 转录区域的活性具有上下文依赖性影响,不同组蛋白残基上的单个或组合标记为基因表达提供了不同的信号。在哺乳动物细胞中发现的 42 种组蛋白甲基转移酶中,有一半以上已被研究过它们在脂肪生成过程中的作用,但在现有的大量文献中,不同参与者之间的潜在关联或新出现的模式还不够清晰。在这篇综述中,我们将总结过去 15 年中发表的有关组蛋白甲基转移酶(包括蛋白质精氨酸甲基转移酶(PRMTs)和赖氨酸甲基转移酶(KMTs))在脂肪生成过程中作用的研究的重要发现。我们进一步发现,PRMT1/4/5、H3K4 KMTs(MLL1、MLL3、MLL4、SMYD2和SET7/9)和H3K27 KMTs(EZH2)在脂肪生成过程中都起着积极作用,而PRMT6/7和H3K9 KMTs(G9a、SUV39H1、SUV39H2和SETDB1)在脂肪生成过程中起着消极作用。
{"title":"Regulation of adipogenesis by histone methyltransferases","authors":"Yuanxiang Zhao , Zachary Skovgaard , Qinyi Wang","doi":"10.1016/j.diff.2024.100746","DOIUrl":"10.1016/j.diff.2024.100746","url":null,"abstract":"<div><p>Epigenetic regulation is a critical component of lineage determination. Adipogenesis is the process through which uncommitted stem cells or adipogenic precursor cells differentiate into adipocytes, the most abundant cell type of the adipose tissue. Studies examining chromatin modification during adipogenesis have provided further understanding of the molecular blueprint that controls the onset of adipogenic differentiation. Unlike histone acetylation, histone methylation has context dependent effects on the activity of a transcribed region of DNA, with individual or combined marks on different histone residues providing distinct signals for gene expression. Over half of the 42 histone methyltransferases identified in mammalian cells have been investigated in their role during adipogenesis, but across the large body of literature available, there is a lack of clarity over potential correlations or emerging patterns among the different players. In this review, we will summarize important findings from studies published in the past 15 years that have investigated the role of histone methyltransferases during adipogenesis, including both protein arginine methyltransferases (PRMTs) and lysine methyltransferases (KMTs). We further reveal that PRMT1/4/5, H3K4 KMTs (MLL1, MLL3, MLL4, SMYD2 and SET7/9) and H3K27 KMTs (EZH2) all play positive roles during adipogenesis, while PRMT6/7 and H3K9 KMTs (G9a, SUV39H1, SUV39H2, and SETDB1) play negative roles during adipogenesis.</p></div>","PeriodicalId":50579,"journal":{"name":"Differentiation","volume":"136 ","pages":"Article 100746"},"PeriodicalIF":2.9,"publicationDate":"2024-01-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0301468124000021/pdfft?md5=4d52ee29c3658350512006682d1fb712&pid=1-s2.0-S0301468124000021-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139469352","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Bardet-Biedl syndrome (BBS) is an inherited disorder primarily ciliopathy with pleiotropic multi-systemic phenotypic involvement, including adipose, nerve, retinal, kidney, Etc. Consequently, it is characterized by obesity, cognitive impairment and retinal, kidney and cutaneous abnormalities. Initial studies, including ours have shown that BBS genes play a role in the early developmental stages of adipocytes and β-cells. However, this role in other BBS-related tissues is unknown.
We investigated BBS genes involvement in the proliferation and early differentiation of different BBS cell types.
The involvement of BBS genes in cellular proliferation were studied in seven in-vitro and transgenic cell models; keratinocytes (hHaCaT) and Ras-transfected keratinocytes (Ras-hHaCaT), neuronal cell lines (hSH-SY5Y and rPC-12), silenced BBS4 neural cell lines (siBbs4 hSH-SY5Y and siBbs4 rPC-12), adipocytes (m3T3L1), and ex-vivo transformed B-cells obtain from BBS4 patients, using molecular and biochemical methodologies.
RashHaCaT cells showed an accelerated proliferation rate in parallel to significant reduction in the transcript levels of BBS1, 2, and 4. BBS1, 2, and 4 transcripts linked with hHaCaT cell cycle arrest (G1 phase) using both chemical (CDK4 inhibitor) and serum deprivation methodologies. Adipocyte (m3T3-L1) Bbs1, 2 and 4 transcript levels corresponded to the cell cycle phase (CDK4 inhibitor and serum deprivation). SiBBS4 hSH-SY5Y cells exhibited early cell proliferation and differentiation (wound healing assay) rates. SiBbs4 rPC-12 models exhibited significant proliferation and differentiation rate corresponding to Nestin expression levels. BBS4 patients-transformed B-cells exhibited an accelerated proliferation rate (LPS-induced methodology).
In conclusions, the BBS4 gene plays a significant, similar and global role in the cellular proliferation of various BBS related tissues. These results highlight the universal role of the BBS gene in the cell cycle, and further deepen the knowledge of the mechanisms underlying the development of BBS.
{"title":"BBS genes are involved in accelerated proliferation and early differentiation of BBS-related tissues","authors":"Avital Horwitz , Noa Levi-Carmel , Olga Shnaider , Ruth Birk","doi":"10.1016/j.diff.2024.100745","DOIUrl":"10.1016/j.diff.2024.100745","url":null,"abstract":"<div><p>Bardet-Biedl syndrome (BBS) is an inherited disorder primarily ciliopathy with pleiotropic multi-systemic phenotypic involvement, including adipose, nerve, retinal, kidney, Etc. Consequently, it is characterized by obesity, cognitive impairment and retinal, kidney and cutaneous abnormalities. Initial studies, including ours have shown that <em>BBS</em> genes play a role in the early developmental stages of adipocytes and β-cells. However, this role in other BBS-related tissues is unknown.</p><p>We investigated <em>BBS</em> genes involvement in the proliferation and early differentiation of different BBS cell types.</p><p>The involvement of <em>BBS</em><span> genes in cellular proliferation were studied in seven </span><em>in-vitro</em><span><span> and transgenic cell models; </span>keratinocytes (</span><em>hHaCaT</em>) and Ras-transfected keratinocytes (<em>Ras-hHaCaT</em>), neuronal cell lines (<em>hSH-SY5Y</em> and <em>rPC-12</em>), silenced <span><em>BBS4</em></span> neural cell lines (s<em>iBbs4 hSH-SY5Y</em> and <em>siBbs4 rPC-12</em>), adipocytes (<em>m3T3L1</em>), and <em>ex-vivo</em> transformed B-cells obtain from <em>BBS4</em> patients, using molecular and biochemical methodologies.</p><p><em>RashHaCaT</em> cells showed an accelerated proliferation rate in parallel to significant reduction in the transcript levels of <span><em>BBS1</em><em>, 2</em></span>, and <em>4</em>. <em>BBS1, 2, and 4</em> transcripts linked with <em>hHaCaT</em><span> cell cycle arrest (G1 phase) using both chemical (CDK4 inhibitor) and serum deprivation methodologies. Adipocyte (</span><em>m3T3-L1</em>) <em>Bbs1, 2</em> and <em>4</em><span> transcript levels corresponded to the cell cycle phase (CDK4 inhibitor and serum deprivation). </span><em>SiBBS4 hSH-SY5Y</em> cells exhibited early cell proliferation and differentiation (wound healing assay) rates. <em>SiBbs4 rPC-12</em> models exhibited significant proliferation and differentiation rate corresponding to Nestin expression levels. <em>BBS4</em> patients-transformed B-cells exhibited an accelerated proliferation rate (LPS-induced methodology).</p><p>In conclusions, the <em>BBS4</em> gene plays a significant, similar and global role in the cellular proliferation of various BBS related tissues. These results highlight the universal role of the BBS gene in the cell cycle, and further deepen the knowledge of the mechanisms underlying the development of BBS.</p></div>","PeriodicalId":50579,"journal":{"name":"Differentiation","volume":"135 ","pages":"Article 100745"},"PeriodicalIF":2.9,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139375767","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-01DOI: 10.1016/j.diff.2023.11.002
Laurence Baskin, Mei Cao, Sena Askel, Yi Li, Gerald Cunha
{"title":"Ovotesticular cords and ovotesticular follicles: New markers in a model of human mixed ovotestis","authors":"Laurence Baskin, Mei Cao, Sena Askel, Yi Li, Gerald Cunha","doi":"10.1016/j.diff.2023.11.002","DOIUrl":"10.1016/j.diff.2023.11.002","url":null,"abstract":"","PeriodicalId":50579,"journal":{"name":"Differentiation","volume":"135 ","pages":"Article 100739"},"PeriodicalIF":2.9,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0301468123000786/pdfft?md5=b1eae3a9d5f4d791ad58e0a4d047f69f&pid=1-s2.0-S0301468123000786-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138435410","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-01DOI: 10.1016/j.diff.2023.100743
Miranda R. Krueger , Elizabeth Fishman-Williams , Sergi Simó , Alice F. Tarantal , Anna La Torre
The fovea centralis (fovea) is a specialized region of the primate retina that plays crucial roles in high-resolution visual acuity and color perception. The fovea is characterized by a high density of cone photoreceptors and no rods, and unique anatomical properties that contribute to its remarkable visual capabilities. Early histological analyses identified some of the key events that contribute to foveal development, but the mechanisms that direct the specification of this area are not understood. Recently, the expression of the retinoic acid-metabolizing enzyme CYP26A1 has become a hallmark of some of the retinal specializations found in vertebrates, including the primate fovea and the high-acuity area in avian species. In chickens, the retinoic acid pathway regulates the expression of FGF8 to then direct the development of a rod-free area. Similarly, high levels of CYP26A1, CDKN1A, and NPVF expression have been observed in the primate macula using transcriptomic approaches. However, which retinal cells express these genes and their expression dynamics in the developing primate eye remain unknown. Here, we systematically characterize the expression patterns of CYP26A1, FGF8, CDKN1A, and NPVF during the development of the rhesus monkey retina, from early stages of development in the first trimester until the third trimester (near term). Our data suggest that some of the markers previously proposed to be fovea-specific are not enriched in the progenitors of the rhesus monkey fovea. In contrast, CYP26A1 is expressed at high levels in the progenitors of the fovea, while it localizes in a subpopulation of macular Müller glia cells later in development. Together these data provide invaluable insights into the expression dynamics of several molecules in the nonhuman primate retina and highlight the developmental advancement of the foveal region.
{"title":"Expression patterns of CYP26A1, FGF8, CDKN1A, and NPVF in the developing rhesus monkey retina","authors":"Miranda R. Krueger , Elizabeth Fishman-Williams , Sergi Simó , Alice F. Tarantal , Anna La Torre","doi":"10.1016/j.diff.2023.100743","DOIUrl":"10.1016/j.diff.2023.100743","url":null,"abstract":"<div><p>The <em>fovea centralis</em> (fovea) is a specialized region of the primate retina that plays crucial roles in high-resolution visual acuity and color perception. The fovea is characterized by a high density of cone photoreceptors and no rods, and unique anatomical properties that contribute to its remarkable visual capabilities. Early histological analyses identified some of the key events that contribute to foveal development, but the mechanisms that direct the specification of this area are not understood. Recently, the expression of the retinoic acid-metabolizing enzyme <em>CYP26A1</em> has become a hallmark of some of the retinal specializations found in vertebrates, including the primate fovea and the high-acuity area in avian species. In chickens, the retinoic acid pathway regulates the expression of <em>FGF8</em> to then direct the development of a rod-free area. Similarly, high levels of <em>CYP26A1, CDKN1A,</em> and <em>NPVF</em> expression have been observed in the primate macula using transcriptomic approaches. However, which retinal cells express these genes and their expression dynamics in the developing primate eye remain unknown. Here, we systematically characterize the expression patterns of <em>CYP26A1, FGF8, CDKN1A</em>, and <em>NPVF</em> during the development of the rhesus monkey retina, from early stages of development in the first trimester until the third trimester (near term). Our data suggest that some of the markers previously proposed to be fovea-specific are not enriched in the progenitors of the rhesus monkey fovea. In contrast, <em>CYP26A1</em> is expressed at high levels in the progenitors of the fovea, while it localizes in a subpopulation of macular Müller glia cells later in development. Together these data provide invaluable insights into the expression dynamics of several molecules in the nonhuman primate retina and highlight the developmental advancement of the foveal region.</p></div>","PeriodicalId":50579,"journal":{"name":"Differentiation","volume":"135 ","pages":"Article 100743"},"PeriodicalIF":2.9,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0301468123000919/pdfft?md5=016854dcce39621407be1f001cee6238&pid=1-s2.0-S0301468123000919-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138692940","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-01DOI: 10.1016/j.diff.2023.11.001
Arindam Ghosh , Anup Som
Growing evidence has shown that besides the protein coding genes, the non-coding elements of the genome are indispensable for maintaining the property of self-renewal in human embryonic stem cells and in cell fate determination. However, the regulatory mechanisms and the landscape of interactions between the coding and non-coding elements is poorly understood. In this work, we used weighted gene co-expression network analysis (WGCNA) on transcriptomic data retrieved from RNA-seq and small RNA-seq experiments and reconstructed the core human pluripotency network (called PluriMLMiNet) consisting of 375 mRNA, 57 lncRNA and 207 miRNAs. Furthermore, we derived networks specific to the naïve and primed states of human pluripotency (called NaiveMLMiNet and PrimedMLMiNet respectively) that revealed a set of molecular markers (RPS6KA1, ZYG11A, ZNF695, ZNF273, and NLRP2 for naive state, and RAB34, TMEM178B, PTPRZ1, USP44, KIF1A and LRRN1 for primed state) which can be used to distinguish the pluripotent state from the non-pluripotent state and also to identify the intra-pluripotency states (i.e., naïve and primed state). The lncRNA DANT1 was found to be a crucial as it formed a bridge between the naive and primed state-specific networks. Analysis of the genes neighbouring DANT1 suggested its possible role as a competing endogenous RNA (ceRNA) for the induction and maintenance of human pluripotency. This was computationally validated by predicting the missing DANT1-miRNA interactions to complete the ceRNA circuit. Here we first report that DANT1 might harbour binding sites for miRNAs hsa-miR-30c-2-3p, hsa-miR-210–3p and hsa-let-7b-5p which may influence pluripotency.
{"title":"Network analysis of transcriptomic data uncovers molecular signatures and the interplay of mRNAs, lncRNAs, and miRNAs in human embryonic stem cells","authors":"Arindam Ghosh , Anup Som","doi":"10.1016/j.diff.2023.11.001","DOIUrl":"10.1016/j.diff.2023.11.001","url":null,"abstract":"<div><p>Growing evidence has shown that besides the protein coding genes, the non-coding elements of the genome are indispensable for maintaining the property of self-renewal in human embryonic stem cells and in cell fate determination. However, the regulatory mechanisms and the landscape of interactions between the coding and non-coding elements is poorly understood. In this work, we used weighted gene co-expression network analysis (WGCNA) on transcriptomic data retrieved from RNA-seq and small RNA-seq experiments and reconstructed the core human pluripotency network (called PluriMLMiNet) consisting of 375 mRNA, 57 lncRNA and 207 miRNAs. Furthermore, we derived networks specific to the naïve and primed states of human pluripotency (called NaiveMLMiNet and PrimedMLMiNet respectively) that revealed a set of molecular markers (RPS6KA1, ZYG11A, ZNF695, ZNF273, and NLRP2 for naive state, and RAB34, TMEM178B, PTPRZ1, USP44, KIF1A and LRRN1 for primed state) which can be used to distinguish the pluripotent state from the non-pluripotent state and also to identify the intra-pluripotency states (i.e., naïve and primed state). The lncRNA DANT1 was found to be a crucial as it formed a bridge between the naive and primed state-specific networks. Analysis of the genes neighbouring DANT1 suggested its possible role as a competing endogenous RNA (ceRNA) for the induction and maintenance of human pluripotency. This was computationally validated by predicting the missing DANT1-miRNA interactions to complete the ceRNA circuit. Here we first report that DANT1 might harbour binding sites for miRNAs hsa-miR-30c-2-3p, hsa-miR-210–3p and hsa-let-7b-5p which may influence pluripotency.</p></div>","PeriodicalId":50579,"journal":{"name":"Differentiation","volume":"135 ","pages":"Article 100738"},"PeriodicalIF":2.9,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135764322","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}