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Fibroblast Growth Factor 6 成纤维细胞生长因子 6
IF 2.9 3区 生物学 Q4 CELL BIOLOGY Pub Date : 2024-04-10 DOI: 10.1016/j.diff.2024.100780
Jennelle Smith , Loydie A. Jerome-Majewska

Fibroblast Growth Factor 6 (FGF6), also referred to as HST2 or HBGF6, is a member of the Fibroblast Growth Factor (FGF), the Heparin Binding Growth Factor (HBGF) and the Heparin Binding Secretory Transforming Gene (HST) families. The genomic and protein structure of FGF6 is highly conserved among varied species, as is its expression in muscle and muscle progenitor cells. Like other members of the FGF family, FGF6 regulates cell proliferation, differentiation, and migration. Specifically, it plays key roles in myogenesis and muscular regeneration, angiogenesis, along with iron transport and lipid metabolism. Similar to others from the FGF family, FGF6 also possesses oncogenic transforming activity, and as such is implicated in a variety of cancers.

成纤维细胞生长因子 6(FGF6),又称 HST2 或 HBGF6,是成纤维细胞生长因子(FGF)、肝素结合生长因子(HBGF)和肝素结合分泌转化基因(HST)家族的成员。FGF6 的基因组和蛋白质结构在不同物种中高度保守,在肌肉和肌肉祖细胞中的表达也是如此。与 FGF 家族的其他成员一样,FGF6 也能调节细胞的增殖、分化和迁移。具体来说,它在肌肉生成和肌肉再生、血管生成以及铁运输和脂质代谢中发挥着关键作用。与其他 FGF 家族成员类似,FGF6 也具有致癌转化活性,因此与多种癌症有关。
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引用次数: 0
Cell cycle perturbation uncouples mitotic progression and invasive behavior in a post-mitotic cell 细胞周期扰动使有丝分裂进程与有丝分裂后细胞的侵袭行为脱钩
IF 2.9 3区 生物学 Q4 CELL BIOLOGY Pub Date : 2024-03-11 DOI: 10.1016/j.diff.2024.100765
Michael A.Q. Martinez , Chris Z. Zhao , Frances E.Q. Moore , Callista Yee , Wan Zhang , Kang Shen , Benjamin L. Martin , David Q. Matus

The acquisition of the post-mitotic state is crucial for the execution of many terminally differentiated cell behaviors during organismal development. However, the mechanisms that maintain the post-mitotic state in this context remain poorly understood. To gain insight into these mechanisms, we used the genetically and visually accessible model of C. elegans anchor cell (AC) invasion into the vulval epithelium. The AC is a terminally differentiated uterine cell that normally exits the cell cycle and enters a post-mitotic state before initiating contact between the uterus and vulva through a cell invasion event. Here, we set out to identify the set of negative cell cycle regulators that maintain the AC in this post-mitotic, invasive state. Our findings revealed a critical role for CKI-1 (p21CIP1/p27KIP1) in redundantly maintaining the post-mitotic state of the AC, as loss of CKI-1 in combination with other negative cell cycle regulators—including CKI-2 (p21CIP1/p27KIP1), LIN-35 (pRb/p107/p130), FZR-1 (Cdh1/Hct1), and LIN-23 (β-TrCP)—resulted in proliferating ACs. Remarkably, time-lapse imaging revealed that these ACs retain their ability to invade. Upon examination of a node in the gene regulatory network controlling AC invasion, we determined that proliferating, invasive ACs do so by maintaining aspects of pro-invasive gene expression. We therefore report that the requirement for a post-mitotic state for invasive cell behavior can be bypassed following direct cell cycle perturbation.

获得后有丝分裂状态对生物体发育过程中许多终末分化细胞行为的执行至关重要。然而,在这种情况下维持后有丝分裂状态的机制仍然鲜为人知。为了深入了解这些机制,我们使用了锚细胞(AC)侵入外阴上皮细胞的遗传和可视模型。锚细胞是一种终末分化的子宫细胞,通常会退出细胞周期并进入后有丝分裂状态,通过细胞入侵事件启动子宫和外阴之间的接触。在这里,我们试图找出维持 AC 处于这种后有丝分裂和入侵状态的一系列细胞周期负调控因子。我们的发现揭示了 CKI-1(p21/p27)在冗余维持 AC 的后有丝分裂状态中的关键作用,因为 CKI-1 与其他细胞周期负调控因子(包括 CKI-2(p21/p27)、LIN-35(pRb/p107/p130)、FZR-1(Cdh1/Hct1)和 LIN-23 (β-TrCP))结合缺失会导致 AC 增殖。值得注意的是,延时成像显示这些 AC 保持了入侵能力。在对控制 AC 侵袭的基因调控网络中的一个节点进行检查后,我们确定增殖的侵袭性 AC 是通过维持促侵袭基因表达的某些方面来实现侵袭的。因此,我们报告说,直接扰乱细胞周期可以绕过入侵细胞行为对后有丝分裂状态的要求。
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引用次数: 0
Type 1 collagen: Synthesis, structure and key functions in bone mineralization 1 型胶原蛋白:合成、结构和骨矿化的关键功能
IF 2.9 3区 生物学 Q4 CELL BIOLOGY Pub Date : 2024-03-01 DOI: 10.1016/j.diff.2024.100757
Vimalraj Selvaraj , Saravanan Sekaran , Anuradha Dhanasekaran , Sudha Warrier

Collagen is a highly abundant protein in the extracellular matrix of humans and mammals, and it plays a critical role in maintaining the body's structural integrity. Type I collagen is the most prevalent collagen type and is essential for the structural integrity of various tissues. It is present in nearly all connective tissues and is the main constituent of the interstitial matrix. Mutations that affect collagen fiber formation, structure, and function can result in various bone pathologies, underscoring the significance of collagen in sustaining healthy bone tissue. Studies on type 1 collagen have revealed that mutations in its encoding gene can lead to diverse bone diseases, such as osteogenesis imperfecta, a disorder characterized by fragile bones that are susceptible to fractures. Knowledge of collagen's molecular structure, synthesis, assembly, and breakdown is vital for comprehending embryonic and foetal development and several aspects of human physiology. In this review, we summarize the structure, molecular biology of type 1 collagen, its biomineralization and pathologies affecting bone.

胶原蛋白是人类和哺乳动物细胞外基质中含量极高的蛋白质,在维持人体结构完整性方面发挥着至关重要的作用。I 型胶原蛋白是最常见的胶原蛋白类型,对各种组织的结构完整性至关重要。它存在于几乎所有结缔组织中,是间质基质的主要成分。影响胶原纤维形成、结构和功能的突变可导致各种骨骼病变,这凸显了胶原蛋白在维持健康骨骼组织方面的重要性。对 1 型胶原蛋白的研究表明,其编码基因的突变可导致多种骨骼疾病,例如成骨不全症,这是一种以骨骼脆弱、易骨折为特征的疾病。了解胶原蛋白的分子结构、合成、组装和分解对于理解胚胎和胎儿发育以及人类生理学的多个方面至关重要。在这篇综述中,我们总结了 1 型胶原蛋白的结构、分子生物学、其生物矿化和影响骨骼的病理学。
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引用次数: 0
Oxidative-stress induced Bmp2-Smad1/5/8 signaling dependent differentiation of early cardiomyocytes from embryonic and adult epicardial cells 氧化应激诱导 Bmp2-Smad1/5/8 信号依赖胚胎和成体心外膜细胞分化早期心肌细胞
IF 2.9 3区 生物学 Q4 CELL BIOLOGY Pub Date : 2024-03-01 DOI: 10.1016/j.diff.2024.100756
Madhurima Ghosh , Riffat Khanam , Arunima Sengupta , Santanu Chakraborty

Heart failure has become a major life-threatening cause affecting millions globally, characterized by the permanent loss of adult functional cardiomyocytes leading to fibrosis which ultimately deprives the heart of its functional efficacy. Here we investigated the reparative property of embryonic and adult epicardial cells towards cardiomyocyte differentiation under oxidative stress-induced conditions along with the identification of a possible molecular signaling pathway. Isolated epicardial cells from embryonic chick hearts subjected to oxidative stress and hypoxia induction. Initial assessment of successful injury induction reveals hypertrophy of isolated epicardial cells. Detailed marker gene expression analyses and inhibitor studies reveal Bone morphogenic protein (Bmp)2-Smad1/5/8 signaling dependent cardiomyocyte lineage specification via epithelial to mesenchymal transition (EMT) post-injury. EMT is further confirmed by increased proliferation, migration, and differentiation towards cardiomyocyte lineage. We have also established an in-vivo model in adult male rats using Isoproterenol. Successful oxidative stress-mediated injury induction in adult heart was marked by increased activated fibroblasts followed by apoptosis of adult cardiomyocytes. The detailed characterization of adult epicardial cells reveals similar findings to our avian in-vitro data. Both in-vitro and in-vivo results show a significant increase in the expression of cardiomyocyte specific markers indicative of lineage specificity and activation of epicardial cells post oxidative stress mediated injury. Our findings suggest an EMT-induced reactivation of epicardial cells and early cardiomyocyte lineage specification following oxidative stress in a Bmp2- Smad1/5/8 dependent manner. Overall, this regulatory mechanism of cardiomyocyte differentiation induced by oxidative stress may contribute to the field of cardiac repair and regenerative therapeutics.

心力衰竭已成为危及全球数百万人生命的主要原因,其特点是成年功能性心肌细胞的永久性丧失导致纤维化,最终剥夺了心脏的功能效力。在此,我们研究了胚胎和成人心外膜细胞在氧化应激诱导条件下对心肌细胞分化的修复特性,并确定了一种可能的分子信号通路。从胚胎小鸡心脏分离出心外膜细胞,对其进行氧化应激和缺氧诱导。对成功诱导损伤的初步评估显示,分离的心外膜细胞肥大。详细的标记基因表达分析和抑制剂研究显示,骨形态发生蛋白(Bmp)2-Smad1/5/8 信号依赖于损伤后上皮向间充质转化(EMT)的心肌细胞系规格。上皮细胞向间充质转化可通过向心肌细胞系增殖、迁移和分化的增加得到进一步证实。我们还利用异丙肾上腺素在成年雄性大鼠中建立了一个模型。氧化应激介导的成体心脏损伤诱导成功的标志是活化的成纤维细胞增加,随后成体心肌细胞凋亡。成年心外膜细胞的详细特征显示了与我们的禽类数据类似的发现。结果表明,氧化应激介导的损伤后,心肌细胞特异性标志物的表达明显增加,表明心外膜衍生细胞的品系特异性和活化。我们的研究结果表明,氧化应激后,EMT 诱导的心外膜细胞再激活和早期心肌细胞系的分化是以 Bmp2- Smad1/5/8 依赖性方式进行的。总之,氧化应激诱导心肌细胞分化的这一调控机制可能有助于心脏修复和再生治疗领域。
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引用次数: 0
The road to gene manipulation in the mouse: Jean Brachet Memorial Lecture of the International Society of Differentiation (delivered June 21, 2023 at Cold Spring Harbor Laboratory) 2023 年 6 月 21 日在冷泉港实验室发表的国际分化学会让-布拉谢纪念演讲:小鼠基因操作之路
IF 2.9 3区 生物学 Q4 CELL BIOLOGY Pub Date : 2024-01-29 DOI: 10.1016/j.diff.2024.100753
Virginia Papaioannou PhD

Genetic manipulation in mammals has progressed rapidly in the past decade with the advent of CRISPR-Cas gene editing tools, promising profound impacts on the understanding of human development, health and disease. However, many years of research in divergent fields of experimental embryology, genetics, reproduction, molecular biology and transgenic technology laid the groundwork and have played critical roles for this progress. This article details various threads of research and the central role of the laboratory mouse that came together in reaching this point, all from the perspective of a scientist whose research was deeply immersed in the field.

随着 CRISPR-Cas 基因编辑工具的出现,哺乳动物的遗传操作在过去十年中取得了飞速发展,有望对人类的发育、健康和疾病产生深远影响。然而,多年来在实验胚胎学、遗传学、生殖学、分子生物学和转基因技术等不同领域的研究为这一进展奠定了基础并发挥了关键作用。这篇文章从一位深耕于这一领域的科学家的视角,详细介绍了达到这一目标的各种研究线索以及实验小鼠的核心作用。
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引用次数: 0
Regulation of adipogenesis by histone methyltransferases 组蛋白甲基转移酶对脂肪生成的调控
IF 2.9 3区 生物学 Q4 CELL BIOLOGY Pub Date : 2024-01-14 DOI: 10.1016/j.diff.2024.100746
Yuanxiang Zhao , Zachary Skovgaard , Qinyi Wang

Epigenetic regulation is a critical component of lineage determination. Adipogenesis is the process through which uncommitted stem cells or adipogenic precursor cells differentiate into adipocytes, the most abundant cell type of the adipose tissue. Studies examining chromatin modification during adipogenesis have provided further understanding of the molecular blueprint that controls the onset of adipogenic differentiation. Unlike histone acetylation, histone methylation has context dependent effects on the activity of a transcribed region of DNA, with individual or combined marks on different histone residues providing distinct signals for gene expression. Over half of the 42 histone methyltransferases identified in mammalian cells have been investigated in their role during adipogenesis, but across the large body of literature available, there is a lack of clarity over potential correlations or emerging patterns among the different players. In this review, we will summarize important findings from studies published in the past 15 years that have investigated the role of histone methyltransferases during adipogenesis, including both protein arginine methyltransferases (PRMTs) and lysine methyltransferases (KMTs). We further reveal that PRMT1/4/5, H3K4 KMTs (MLL1, MLL3, MLL4, SMYD2 and SET7/9) and H3K27 KMTs (EZH2) all play positive roles during adipogenesis, while PRMT6/7 and H3K9 KMTs (G9a, SUV39H1, SUV39H2, and SETDB1) play negative roles during adipogenesis.

表观遗传调控是血统决定的关键组成部分。脂肪生成是指未定型的干细胞或脂肪生成前体细胞分化成脂肪细胞的过程,脂肪细胞是脂肪组织中最丰富的细胞类型。对脂肪生成过程中染色质修饰的研究使人们进一步了解了控制脂肪生成分化开始的分子蓝图。与组蛋白乙酰化不同,组蛋白甲基化对 DNA 转录区域的活性具有上下文依赖性影响,不同组蛋白残基上的单个或组合标记为基因表达提供了不同的信号。在哺乳动物细胞中发现的 42 种组蛋白甲基转移酶中,有一半以上已被研究过它们在脂肪生成过程中的作用,但在现有的大量文献中,不同参与者之间的潜在关联或新出现的模式还不够清晰。在这篇综述中,我们将总结过去 15 年中发表的有关组蛋白甲基转移酶(包括蛋白质精氨酸甲基转移酶(PRMTs)和赖氨酸甲基转移酶(KMTs))在脂肪生成过程中作用的研究的重要发现。我们进一步发现,PRMT1/4/5、H3K4 KMTs(MLL1、MLL3、MLL4、SMYD2和SET7/9)和H3K27 KMTs(EZH2)在脂肪生成过程中都起着积极作用,而PRMT6/7和H3K9 KMTs(G9a、SUV39H1、SUV39H2和SETDB1)在脂肪生成过程中起着消极作用。
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引用次数: 0
BBS genes are involved in accelerated proliferation and early differentiation of BBS-related tissues BBS 基因参与 BBS 相关组织的加速增殖和早期分化
IF 2.9 3区 生物学 Q4 CELL BIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.diff.2024.100745
Avital Horwitz , Noa Levi-Carmel , Olga Shnaider , Ruth Birk

Bardet-Biedl syndrome (BBS) is an inherited disorder primarily ciliopathy with pleiotropic multi-systemic phenotypic involvement, including adipose, nerve, retinal, kidney, Etc. Consequently, it is characterized by obesity, cognitive impairment and retinal, kidney and cutaneous abnormalities. Initial studies, including ours have shown that BBS genes play a role in the early developmental stages of adipocytes and β-cells. However, this role in other BBS-related tissues is unknown.

We investigated BBS genes involvement in the proliferation and early differentiation of different BBS cell types.

The involvement of BBS genes in cellular proliferation were studied in seven in-vitro and transgenic cell models; keratinocytes (hHaCaT) and Ras-transfected keratinocytes (Ras-hHaCaT), neuronal cell lines (hSH-SY5Y and rPC-12), silenced BBS4 neural cell lines (siBbs4 hSH-SY5Y and siBbs4 rPC-12), adipocytes (m3T3L1), and ex-vivo transformed B-cells obtain from BBS4 patients, using molecular and biochemical methodologies.

RashHaCaT cells showed an accelerated proliferation rate in parallel to significant reduction in the transcript levels of BBS1, 2, and 4. BBS1, 2, and 4 transcripts linked with hHaCaT cell cycle arrest (G1 phase) using both chemical (CDK4 inhibitor) and serum deprivation methodologies. Adipocyte (m3T3-L1) Bbs1, 2 and 4 transcript levels corresponded to the cell cycle phase (CDK4 inhibitor and serum deprivation). SiBBS4 hSH-SY5Y cells exhibited early cell proliferation and differentiation (wound healing assay) rates. SiBbs4 rPC-12 models exhibited significant proliferation and differentiation rate corresponding to Nestin expression levels. BBS4 patients-transformed B-cells exhibited an accelerated proliferation rate (LPS-induced methodology).

In conclusions, the BBS4 gene plays a significant, similar and global role in the cellular proliferation of various BBS related tissues. These results highlight the universal role of the BBS gene in the cell cycle, and further deepen the knowledge of the mechanisms underlying the development of BBS.

巴尔德-比德尔综合征(Bardet-Biedl Syndrome,BBS)是一种以纤毛虫病为主的遗传性疾病,多系统表型受累,包括脂肪、神经、视网膜、肾脏等。因此,该病的特征是肥胖、认知障碍以及视网膜、肾脏和皮肤异常。包括我们在内的初步研究表明,BBS 基因在脂肪细胞和 β 细胞的早期发育阶段发挥作用。我们研究了 BBS 基因参与不同 BBS 细胞类型增殖和早期分化的情况。我们在七个体外和转基因细胞模型中研究了 BBS 基因参与细胞增殖的情况;使用分子和生化方法研究了七种体外和转基因细胞模型:角质形成细胞(hHaCaT)和 Ras 转染角质形成细胞(Ras-hHaCaT)、神经细胞系(hSH-SY5Y 和 rPC-12)、沉默 BBS4 神经细胞系(siBbs4 hSH-SY5Y 和 siBbs4 rPC-12)、脂肪细胞(m3T3L1)以及从 BBS4 患者体内获得的体外转化 B 细胞。RashHaCaT 细胞的增殖速度加快,同时 BBS1、2 和 4 的转录水平显著降低。利用化学方法(CDK4 抑制剂)和血清剥夺法,BBS1、2 和 4 转录本与 hHaCaT 细胞周期停滞(G1 期)有关。脂肪细胞(m3T3-L1)的 Bbs1、2 和 4 转录本水平与细胞周期阶段(CDK4 抑制剂和血清剥夺)相对应。SiBBS4 hSH-SY5Y 细胞表现出早期细胞增殖和分化(伤口愈合试验)率。SiBbs4 rPC-12 模型表现出与 Nestin 表达水平相对应的显著增殖和分化率。总之,BBS4 基因在各种 BBS 相关组织的细胞增殖中发挥着重要、相似和全球性的作用。这些结果凸显了 BBS 基因在细胞周期中的普遍作用,并进一步加深了人们对 BBS 发病机制的认识。
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引用次数: 0
Ovotesticular cords and ovotesticular follicles: New markers in a model of human mixed ovotestis 卵睾丸索和卵睾丸卵泡:人类混合卵睾丸模型中的新标记。
IF 2.9 3区 生物学 Q4 CELL BIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.diff.2023.11.002
Laurence Baskin, Mei Cao, Sena Askel, Yi Li, Gerald Cunha
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引用次数: 0
Expression patterns of CYP26A1, FGF8, CDKN1A, and NPVF in the developing rhesus monkey retina CYP26A1、FGF8、CDKN1A 和 NPVF 在发育中恒河猴视网膜中的表达模式
IF 2.9 3区 生物学 Q4 CELL BIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.diff.2023.100743
Miranda R. Krueger , Elizabeth Fishman-Williams , Sergi Simó , Alice F. Tarantal , Anna La Torre

The fovea centralis (fovea) is a specialized region of the primate retina that plays crucial roles in high-resolution visual acuity and color perception. The fovea is characterized by a high density of cone photoreceptors and no rods, and unique anatomical properties that contribute to its remarkable visual capabilities. Early histological analyses identified some of the key events that contribute to foveal development, but the mechanisms that direct the specification of this area are not understood. Recently, the expression of the retinoic acid-metabolizing enzyme CYP26A1 has become a hallmark of some of the retinal specializations found in vertebrates, including the primate fovea and the high-acuity area in avian species. In chickens, the retinoic acid pathway regulates the expression of FGF8 to then direct the development of a rod-free area. Similarly, high levels of CYP26A1, CDKN1A, and NPVF expression have been observed in the primate macula using transcriptomic approaches. However, which retinal cells express these genes and their expression dynamics in the developing primate eye remain unknown. Here, we systematically characterize the expression patterns of CYP26A1, FGF8, CDKN1A, and NPVF during the development of the rhesus monkey retina, from early stages of development in the first trimester until the third trimester (near term). Our data suggest that some of the markers previously proposed to be fovea-specific are not enriched in the progenitors of the rhesus monkey fovea. In contrast, CYP26A1 is expressed at high levels in the progenitors of the fovea, while it localizes in a subpopulation of macular Müller glia cells later in development. Together these data provide invaluable insights into the expression dynamics of several molecules in the nonhuman primate retina and highlight the developmental advancement of the foveal region.

中央凹(fovea centralis)是灵长类视网膜的一个特殊区域,在高分辨率视觉敏锐度和色彩感知方面起着至关重要的作用。眼窝的特点是锥体光感受器密度高,没有视杆细胞,其独特的解剖学特性造就了它非凡的视觉能力。早期的组织学分析确定了促进眼窝发育的一些关键事件,但指导该区域规格化的机制尚不清楚。最近,视黄酸代谢酶 CYP26A1 的表达已成为脊椎动物视网膜特化的标志,包括灵长类动物的眼窝和鸟类的高敏锐区。在鸡体内,视黄酸途径调节 FGF8 的表达,进而引导无杆区的发育。同样,利用转录组学方法在灵长类黄斑中也观察到高水平的 CYP26A1、CDKN1A 和 NPVF 表达。然而,在发育中的灵长类眼睛中,哪些视网膜细胞表达这些基因及其表达动态仍是未知数。在这里,我们系统地描述了 CYP26A1、FGF8、CDKN1A 和 NPVF 在猕猴视网膜发育过程中的表达模式,包括从妊娠头三个月的早期发育阶段到妊娠三个月(近妊娠期)。我们的数据表明,以前提出的一些具有眼窝特异性的标记物在恒河猴眼窝的祖细胞中并不富集。相反,CYP26A1在眼窝祖细胞中高水平表达,而在发育后期则定位于黄斑Müller胶质细胞亚群中。这些数据为了解非人灵长类视网膜中几种分子的表达动态提供了宝贵的信息,并突显了眼窝区域的发育进程。
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引用次数: 0
Network analysis of transcriptomic data uncovers molecular signatures and the interplay of mRNAs, lncRNAs, and miRNAs in human embryonic stem cells 转录组数据网络分析揭示了人类胚胎干细胞中的分子特征以及 mRNA、lncRNA 和 miRNA 的相互作用
IF 2.9 3区 生物学 Q4 CELL BIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.diff.2023.11.001
Arindam Ghosh , Anup Som

Growing evidence has shown that besides the protein coding genes, the non-coding elements of the genome are indispensable for maintaining the property of self-renewal in human embryonic stem cells and in cell fate determination. However, the regulatory mechanisms and the landscape of interactions between the coding and non-coding elements is poorly understood. In this work, we used weighted gene co-expression network analysis (WGCNA) on transcriptomic data retrieved from RNA-seq and small RNA-seq experiments and reconstructed the core human pluripotency network (called PluriMLMiNet) consisting of 375 mRNA, 57 lncRNA and 207 miRNAs. Furthermore, we derived networks specific to the naïve and primed states of human pluripotency (called NaiveMLMiNet and PrimedMLMiNet respectively) that revealed a set of molecular markers (RPS6KA1, ZYG11A, ZNF695, ZNF273, and NLRP2 for naive state, and RAB34, TMEM178B, PTPRZ1, USP44, KIF1A and LRRN1 for primed state) which can be used to distinguish the pluripotent state from the non-pluripotent state and also to identify the intra-pluripotency states (i.e., naïve and primed state). The lncRNA DANT1 was found to be a crucial as it formed a bridge between the naive and primed state-specific networks. Analysis of the genes neighbouring DANT1 suggested its possible role as a competing endogenous RNA (ceRNA) for the induction and maintenance of human pluripotency. This was computationally validated by predicting the missing DANT1-miRNA interactions to complete the ceRNA circuit. Here we first report that DANT1 might harbour binding sites for miRNAs hsa-miR-30c-2-3p, hsa-miR-210–3p and hsa-let-7b-5p which may influence pluripotency.

越来越多的证据表明,除了蛋白质编码基因外,基因组中的非编码元件对于维持人类胚胎干细胞的自我更新特性和细胞命运的决定也是不可或缺的。然而,人们对编码元件和非编码元件之间的调控机制和互动关系还知之甚少。在这项工作中,我们对从RNA-seq和小RNA-seq实验中获取的转录组数据进行了加权基因共表达网络分析(WGCNA),重建了由375个mRNA、57个lncRNA和207个miRNA组成的人类多能性核心网络(称为PluriMLMiNet)。此外,我们还推导出了人类多能性的幼稚态和启蒙态的特异性网络(分别称为 NaiveMLMiNet 和 PrimedMLMiNet),揭示了一组分子标记(幼稚态为 RPS6KA1、ZYG11A、ZNF695、ZNF273、和 NLRP2,以及 RAB34、TMEM178B、PTPRZ1、USP44、KIF1A 和 LRRN1),这些标记可用于区分多能状态和非多能状态,还可用于识别多能内部状态(即,在多能状态下,胚胎的生长和发育都是在多能状态下进行的)。e.,天真状态和引物状态)。研究发现,lncRNA DANT1是一个关键基因,因为它是连接幼稚态和启动态特异性网络的桥梁。对DANT1邻近基因的分析表明,DANT1可能是诱导和维持人类多能性的竞争性内源性RNA(ceRNA)。通过预测DANT1与miRNA之间缺失的相互作用以完成ceRNA回路,计算验证了这一点。在这里,我们首次报道了 DANT1 可能与可能影响多能性的 miRNA hsa-miR-30c-2-3p、hsa-miR-210-3p 和 hsa-let-7b-5p 存在结合位点。
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Differentiation
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